cluster # 7120

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Schistosoma mansoni
cluster # 7120 cluster # 7120 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7120#0 length = 543 sequences # 3

consensus_7120#1 length = 397 sequences # 1

consensusID : consensus_7120#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 543
fasta sequence

                              [ACTGCGGATAATTCGTGTAGGACAATGCCACACAGTATAGTCTATATTCTTGACGACAACAGACCTAGGTCTAGGGCTGTGGTACTTCCGACCCTTGTAAAACGTTTACCATAACCTTTAAGGAGTGGTGTAATTGGCCCAGATGAACCGTTCCAAGATATGGAAAGTACATTATCTGTTCAGCAGTATATACAACAAACAATAAGACGTGATTTTAACAATGTAGATGAGATTTTAACTGCTCCAGAGGGTCAAGATGAAGTAGTCTGGAAATACGAACATTTGAGACAATTCTGTATGGAACTAAATGGATTAGCTGTTTGTTTGCAAGAGCAATGTACCCCCAAAACATGTCCTCAGATGACTGCTACTGAACAATGGATATTTTTGTGTGCAGCTCACGAGACTCCCAAAGAGTGTCCAGCTGTTGATTATACACGACATACGCTTGATGGAGCTGCTTGCCTATTGAATAGCAGTAAATACTTCCCCAGTCGAGTAAGCATCAAAGTTACATCAGTTAATCGTCTTGATTCCGTCGGT]

[+] EMBL CD188617             [ACTGCGGATAATTCGTGTAGGACAATGCCACACAGTATAGTCTATATTCTTGACGACAACAGACCTAGGTCTAGGGCTGTGGTACTTCCGACCCTTGTAAAACGTTTACCATAACCTTTAAGGAGTGGTGTAATTGGCCCAGATGAACCGTTCCAAGATATGGAAAGTACATTATCTGTTCAGCAGTATATACAACAAACAATAAGACGTGATTTTAACAATGTAGATGAGATTTTAACTGCTCCAGAGGGTCAAGATGAAGTAGTCTGGAAATACGAACATTTGAGACAATTCTGTATGGAACTAAATGGATTAGCTGTTTGTTTGCAAGAGCAATGTACCCCCAAAACATGTCCTCAGATGACTGCTACTGAACAATGGATATTTTTGTGTGCAGCTCACAAGACTCCCAAAGAGTGTCCAGCTGTTGATTATACACGACATACGCTTGATGGAGCTGCTTGCCTATTGAATAGCAGT                                                               ]
[-] EMBL CD134887             [                                                                                                                                                                                                                                                                                                                                                              ATGTCCTCAGATGACTGCTACTGAACAATGGATATTTTTGTGTGCAGCTCACGAGACTCCCAAAGAGTGTCCAGCTGTTGATTATACACGACATACGCTTGATGGAGCTGCTTGCCTATTGAATAGCAGTAAATACTTCCCCAGTCGAGTAAGCATCAAAGTTACATCAGTTAATCGTCTTGATTCCGTCGGT]
[-] EMBL CD134891             [                                                                                                                                                                                                                                                                                                                                                              ATGTCCTCAGATGACTGCTACTGAACAATGGATATTTTTGTGTGCAGCTCACGAGACTCCCAAAGAGTGTCCAGCTGTTGATTATACACGACATACGCTTGATGGAGCTGCTTGCCTATTGAATAGCAGTAAATACTTCCCCAGTCGAGTAAGCATCAAAGTTACATCAGTTAATCGTCTTGATTCCGTCGGT]




>consensus_7120#0
ACTGCGGATAATTCGTGTAGGACAATGCCACACAGTATAGTCTATATTCTTGACGACAAC
AGACCTAGGTCTAGGGCTGTGGTACTTCCGACCCTTGTAAAACGTTTACCATAACCTTTA
AGGAGTGGTGTAATTGGCCCAGATGAACCGTTCCAAGATATGGAAAGTACATTATCTGTT
CAGCAGTATATACAACAAACAATAAGACGTGATTTTAACAATGTAGATGAGATTTTAACT
GCTCCAGAGGGTCAAGATGAAGTAGTCTGGAAATACGAACATTTGAGACAATTCTGTATG
GAACTAAATGGATTAGCTGTTTGTTTGCAAGAGCAATGTACCCCCAAAACATGTCCTCAG
ATGACTGCTACTGAACAATGGATATTTTTGTGTGCAGCTCACGAGACTCCCAAAGAGTGT
CCAGCTGTTGATTATACACGACATACGCTTGATGGAGCTGCTTGCCTATTGAATAGCAGT
AAATACTTCCCCAGTCGAGTAAGCATCAAAGTTACATCAGTTAATCGTCTTGATTCCGTC
GGT

consensusID : consensus_7120#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 397
fasta sequence

                              [GGGTTTATTCAAATAGGACAATGGCACAAGTAAAGTCTATTTTCGACGAAACAGACCTGGTACTAAGGCTGAGGAGTGGTGTAATTGGCCCGATGAACCGTTCGAAGATATGGAAAGTACATTAGCTGTTCAGCAGTATATACAACAAACAATAAGACGTGATTTTAACAATGTAGATGAGATTTTAACTGCTCCAGAGGGTCAAGATGAAGTAGTCTGGAAATACGAACATTTGAGACAATTCTGTATGGAACTAAATGGATTAGCTGTTTGTTTGCAAGAGCAATGTACCCCCAAAACATGTCCTCAGATGACTGCTACTGAACAATGGATATTTTTGTGTGCAGCTCACAAGACTCCCAAAGAGTGTCCAGCTGTTGATTATACACGACATACG]

[+] EMBL CD083861             [GGGTTTATTCAAATAGGACAATGGCACAAGTAAAGTCTATTTTCGACGAAACAGACCTGGTACTAAGGCTGAGGAGTGGTGTAATTGGCCCGATGAACCGTTCGAAGATATGGAAAGTACATTAGCTGTTCAGCAGTATATACAACAAACAATAAGACGTGATTTTAACAATGTAGATGAGATTTTAACTGCTCCAGAGGGTCAAGATGAAGTAGTCTGGAAATACGAACATTTGAGACAATTCTGTATGGAACTAAATGGATTAGCTGTTTGTTTGCAAGAGCAATGTACCCCCAAAACATGTCCTCAGATGACTGCTACTGAACAATGGATATTTTTGTGTGCAGCTCACAAGACTCCCAAAGAGTGTCCAGCTGTTGATTATACACGACATACG]




>consensus_7120#1
GGGTTTATTCAAATAGGACAATGGCACAAGTAAAGTCTATTTTCGACGAAACAGACCTGG
TACTAAGGCTGAGGAGTGGTGTAATTGGCCCGATGAACCGTTCGAAGATATGGAAAGTAC
ATTAGCTGTTCAGCAGTATATACAACAAACAATAAGACGTGATTTTAACAATGTAGATGA
GATTTTAACTGCTCCAGAGGGTCAAGATGAAGTAGTCTGGAAATACGAACATTTGAGACA
ATTCTGTATGGAACTAAATGGATTAGCTGTTTGTTTGCAAGAGCAATGTACCCCCAAAAC
ATGTCCTCAGATGACTGCTACTGAACAATGGATATTTTTGTGTGCAGCTCACAAGACTCC
CAAAGAGTGTCCAGCTGTTGATTATACACGACATACG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7120#0      ACTGCGGATAATTCGTGTAGGACAATGCCACACAGTATAGTCTATATTCTTGACGACAAC 60
consensus_7120#1      ----GGGTTTATTCAAATAGGACAATGGCACA-AGTAAAGTCTAT--TTTCGACGA-AAC 52
                           ** * ****   ********** **** **** *******  * * ***** ***

consensus_7120#0      AGACCTAGGTCTAGGGCTGTGGTACTTCCGACCCTTGTAAAACGTTTACCATAACCTTTA 120
consensus_7120#1      AGACCTGGTACTAAGGCTG----------------------------------------- 71
                      ****** *  *** *****                                         

consensus_7120#0      AGGAGTGGTGTAATTGGCCCAGATGAACCGTTCCAAGATATGGAAAGTACATTATCTGTT 180
consensus_7120#1      AGGAGTGGTGTAATTGGCCC-GATGAACCGTTCGAAGATATGGAAAGTACATTAGCTGTT 130
                      ******************** ************ ******************** *****

consensus_7120#0      CAGCAGTATATACAACAAACAATAAGACGTGATTTTAACAATGTAGATGAGATTTTAACT 240
consensus_7120#1      CAGCAGTATATACAACAAACAATAAGACGTGATTTTAACAATGTAGATGAGATTTTAACT 190
                      ************************************************************

consensus_7120#0      GCTCCAGAGGGTCAAGATGAAGTAGTCTGGAAATACGAACATTTGAGACAATTCTGTATG 300
consensus_7120#1      GCTCCAGAGGGTCAAGATGAAGTAGTCTGGAAATACGAACATTTGAGACAATTCTGTATG 250
                      ************************************************************

consensus_7120#0      GAACTAAATGGATTAGCTGTTTGTTTGCAAGAGCAATGTACCCCCAAAACATGTCCTCAG 360
consensus_7120#1      GAACTAAATGGATTAGCTGTTTGTTTGCAAGAGCAATGTACCCCCAAAACATGTCCTCAG 310
                      ************************************************************

consensus_7120#0      ATGACTGCTACTGAACAATGGATATTTTTGTGTGCAGCTCACGAGACTCCCAAAGAGTGT 420
consensus_7120#1      ATGACTGCTACTGAACAATGGATATTTTTGTGTGCAGCTCACAAGACTCCCAAAGAGTGT 370
                      ****************************************** *****************

consensus_7120#0      CCAGCTGTTGATTATACACGACATACGCTTGATGGAGCTGCTTGCCTATTGAATAGCAGT 480
consensus_7120#1      CCAGCTGTTGATTATACACGACATACG--------------------------------- 397
                      ***************************                                 

consensus_7120#0      AAATACTTCCCCAGTCGAGTAAGCATCAAAGTTACATCAGTTAATCGTCTTGATTCCGTC 540
consensus_7120#1      ------------------------------------------------------------
                                                                                  

consensus_7120#0      GGT 543
consensus_7120#1      ---