cluster # 7122

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Schistosoma mansoni
cluster # 7122 cluster # 7122 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7122#0 length = 436 sequences # 3

consensus_7122#1 length = 244 sequences # 1

consensusID : consensus_7122#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 436
fasta sequence

                              [AATAACAAAATAACCCAAAAAACAACAAAATTCTAAAAAACAGAAAGGATGCCAATTGAACAAAGACCATATAGTAATGTTATACATCAAAGTGGTGAAAGAAAAGCTGTTATTAAATATGTTGAAATGAGTAAAGAAATGCAACAAGATG-CTGTACAAACTGCTGCAATGGCTATGGATAAATATAA-TGA-TGATAAAGAT-ATTGCATTATTTTTAAAAAAAGAATTTGATCGTAAATATGAACCAACATGGCATTGTATTATTGGAAGTAAATTTTCAAGTTATGTAACGCATATAAAACAATTCTGTATTTATTTTTCATTGGAAGATCGTGGAGTTCTTCTATTCAAAACTGTATGAAATATCCAACTAAAAATTGTTTCTTCATCATTACTTCTATTAGTTACGATTATAATAATATAGATATCAAGTAAAT]

[+] EMBL CD137035             [AATAACAAAATAACCCAAAAAACAACAAAATTCTAAAAAACAGAAAGGATGCCAATTGAACAAAGACCATATAGTAATGTTATACATCAAAGTGGTGAAAGAAAAGCTGTTATTAAATATGTTGAAATGAGTAAAGAAATGCAACAAGATG CTGTACAAACTGCTGCAATGGCTATGGATAAATATAA TGA TGATAAAGAT ATTGCATTATTTTTAAAAAAAGAATTTGATCGTAAATATGAACCAACATGGCATTGTATTATTGGAAGTAAATTTTCAAGTTATGTAACGCATATAAAACAATTCTGTATTTATTTTTCATTGGAAGATCGTGGAGTTCTTCTA                                                                                           ]
[+] EMBL SMAA14104            [                                  AAAAAACAGAAAAGATGCCAATTGAACAAAGACCATATAGTAATGTTATACATGAAAGTGGTGAAAGAAAAGCTGTTATTAAATATGTTGAAATGAGTAAAGAAATGCAACAAGATGCCTGTACAAA   CTGCAATGGCTATGGATAAATATAATTGATTGATAAAGATCATTG                                                                                                                                                                                                                                       ]
[+] EMBL SM858                [                                                                                                                                                 AAGATG CTGTACAAACTGCTGCAATGGCTATGGATAAATATAA TGA TGATAAAGAT NTTGCATTATTTNTAAAAAAAGAATNTGATCGTAAATATGAACCAACATGGCATTGTATTATTGGAAGTAAATTTTCAAGTTATGTAACGCATATAAAACAANTCTGTATTTATTTCCCATTGGAAGATCGCGGAGTTCTTCTATTCAAAACTGTATGAAATATCCAACTAAAAATTGTTTCTTCATCATTACTTCTATTAGTTACGATTATAATAATATAGATATCAAGTAAAT]




>consensus_7122#0
AATAACAAAATAACCCAAAAAACAACAAAATTCTAAAAAACAGAAAGGATGCCAATTGAA
CAAAGACCATATAGTAATGTTATACATCAAAGTGGTGAAAGAAAAGCTGTTATTAAATAT
GTTGAAATGAGTAAAGAAATGCAACAAGATGCTGTACAAACTGCTGCAATGGCTATGGAT
AAATATAATGATGATAAAGATATTGCATTATTTTTAAAAAAAGAATTTGATCGTAAATAT
GAACCAACATGGCATTGTATTATTGGAAGTAAATTTTCAAGTTATGTAACGCATATAAAA
CAATTCTGTATTTATTTTTCATTGGAAGATCGTGGAGTTCTTCTATTCAAAACTGTATGA
AATATCCAACTAAAAATTGTTTCTTCATCATTACTTCTATTAGTTACGATTATAATAATA
TAGATATCAAGTAAAT

consensusID : consensus_7122#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 244
fasta sequence

                              [TATGGATAAATATAATGATGATAAAGATATTGCATTATTTTTAAACAAAGAATTTGATCGTAAATATGAAGCCAACATGGCATTGTATTATTGGAAGTAATTTTCAAGTTATGTAACGCATATGAAACAATTCTGAACTCTTAGTTTTTCATTGGAAGATCGTGGAGTTCCTCCTATTCAAAACTGTAGTGAATTTCCACTAAAATTGTTTTTCATCATAACTTCAATTGGTTAGGATTTATAA]

[+] EMBL AI974225             [TATGGATAAATATAATGATGATAAAGATATTGCATTATTTTTAAACAAAGAATTTGATCGTAAATATGAAGCCAACATGGCATTGTATTATTGGAAGTAATTTTCAAGTTATGTAACGCATATGAAACAATTCTGAACTCTTAGTTTTTCATTGGAAGATCGTGGAGTTCCTCCTATTCAAAACTGTAGTGAATTTCCACTAAAATTGTTTTTCATCATAACTTCAATTGGTTAGGATTTATAA]




>consensus_7122#1
TATGGATAAATATAATGATGATAAAGATATTGCATTATTTTTAAACAAAGAATTTGATCG
TAAATATGAAGCCAACATGGCATTGTATTATTGGAAGTAATTTTCAAGTTATGTAACGCA
TATGAAACAATTCTGAACTCTTAGTTTTTCATTGGAAGATCGTGGAGTTCCTCCTATTCA
AAACTGTAGTGAATTTCCACTAAAATTGTTTTTCATCATAACTTCAATTGGTTAGGATTT
ATAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7122#0      AATAACAAAATAACCCAAAAAACAACAAAATTCTAAAAAACAGAAAGGATGCCAATTGAA 60
consensus_7122#1      ------------------------------------------------------------
                                                                                  

consensus_7122#0      CAAAGACCATATAGTAATGTTATACATCAAAGTGGTGAAAGAAAAGCTGTTATTAAATAT 120
consensus_7122#1      ------------------------------------------------------------
                                                                                  

consensus_7122#0      GTTGAAATGAGTAAAGAAATGCAACAAGATGCTGTACAAACTGCTGCAATGGCTATGGAT 180
consensus_7122#1      -----------------------------------------------------TATGGAT 7
                                                                           *******

consensus_7122#0      AAATATAATGATGATAAAGATATTGCATTATTTTTAAAAAAAGAATTTGATCGTAAATAT 240
consensus_7122#1      AAATATAATGATGATAAAGATATTGCATTATTTTTAAACAAAGAATTTGATCGTAAATAT 67
                      ************************************** *********************

consensus_7122#0      GAA-CCAACATGGCATTGTATTATTGGAAGTAAATTTTCAAGTTATGTAACGCATATAAA 299
consensus_7122#1      GAAGCCAACATGGCATTGTATTATTGGAAGTAA-TTTTCAAGTTATGTAACGCATATGAA 126
                      *** ***************************** *********************** **

consensus_7122#0      ACAATTCTGTATTT---ATTTTTCATTGGAAGATCGTGGAGTTCTTC-TATTCAAAACTG 355
consensus_7122#1      ACAATTCTGAACTCTTAGTTTTTCATTGGAAGATCGTGGAGTTCCTCCTATTCAAAACTG 186
                      ********* * *     ************************** ** ************

consensus_7122#0      TATGAAATATCCAACTAAAAATTGTTTCTTCATCATTACTTCTATTAGTTACGATT-ATA 414
consensus_7122#1      TAGTGAATTTCCACT--AAAATTGTTT-TTCATCATAACTTCAATTGGTTAGGATTTATA 243
                      **   *** ****    ********** ******** ***** *** **** **** ***

consensus_7122#0      ATAATATAGATATCAAGTAAAT 436
consensus_7122#1      A--------------------- 244
                      *