cluster # 7124

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Schistosoma mansoni
cluster # 7124 cluster # 7124 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7124#0 length = 437 sequences # 2

consensus_7124#1 length = 418 sequences # 2

consensusID : consensus_7124#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 437
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTNTAAGCTTTCTGGAAAATAAAGAAGCGATGTTTATTGTAAAAATAAAAATTAGATTGATTGATAGGGATTTTTACAAAGAAAATAATGTTGGTCATCAAGTTGCCTAGATCTGCAGACGAGATTTTCCAGACAACCGTCATATACCCAGATATGATTTAAATGTTTGACAACAAATTATTCGATTCACAGTCTTTGGAATTTGTAATTGACTACTATTAATTCCAAAGACTGTTTAACCTCATCCTCCACCAGCCATTGGTGGAGCACTTGGAGCACCTCTACAGCCTCCAAATCCACCAAAACGTCCAGGTGGCCGAGGTGGTCTTCCATCCCATGAATTTCTTTGGACTAGATGTTTTCCTGGCGAAAAAGGTCTAAAGGTAAGAGTGTCCGAATAAACAGACAAATGATGTTTG]

[+] EMBL AI395473             [TTTTTTTTTTTTTTTTTTTTNTAAGCTTTCTGGAAAATAAAGAAGCGATGTTTATTGTAAAAATAAAAATTAGATTGATTGATAGGGATTTTTACAAAGAAAATAATGTTGGTCATCAAGTTGCCTAGATCTGCAGACGAGATTTTCCAGACAACCGTCATATACCCAGATATGATTTAAATGTTTGACAACAAATTATTCGATTCACAGTCTTTGGAATTTGTAATTGACTACTATTAATTCCAAAGACTGTTTAACCTCATCCTCCACCAGCCATTGGTGGAGCACTTGGAGCACCTCTACAGCCTCCAAATCCACCAAAACGTCCAGGTGGCCGAGGTGGTCTTCCATCCCATGAATTTCTTTGGACTAGATGTTTTCCTGGCGAAAAAGGTCTAAAGGTAAGAGTGTCCGAATAAACAGACAAATGATGTTTG]
[+] EMBL AI395540             [TTTTTTTTTTTTTTTTTTTTNTAAGNTTTCTGGAAAATAAAGAAGCGATGTTTATTGTAAAAATAAAAATTAGATTGATTGATAGGGATTTTTACAAAGAAAATAATGTTGGTCATCAAGTTGCCTAGATCTGCAGACGAGATTTTCCAGACAACCGTCATATACCCAGATATGATTTAAATGTTTGACAACAAATTATTCGATTCACAGTCTTTGGAATTTGTAATTGACTACTATTAATTCCAAAGACTGTTTAACCTCATCCTCCACCAGCCATTGGTGGAGCACTTGGGGCACCTCTACAGCCTCCAAATCCACCAAAACGTCCAGGTGGGCGAG                                                                                                  ]




>consensus_7124#0
TTTTTTTTTTTTTTTTTTTTNTAAGCTTTCTGGAAAATAAAGAAGCGATGTTTATTGTAA
AAATAAAAATTAGATTGATTGATAGGGATTTTTACAAAGAAAATAATGTTGGTCATCAAG
TTGCCTAGATCTGCAGACGAGATTTTCCAGACAACCGTCATATACCCAGATATGATTTAA
ATGTTTGACAACAAATTATTCGATTCACAGTCTTTGGAATTTGTAATTGACTACTATTAA
TTCCAAAGACTGTTTAACCTCATCCTCCACCAGCCATTGGTGGAGCACTTGGAGCACCTC
TACAGCCTCCAAATCCACCAAAACGTCCAGGTGGCCGAGGTGGTCTTCCATCCCATGAAT
TTCTTTGGACTAGATGTTTTCCTGGCGAAAAAGGTCTAAAGGTAAGAGTGTCCGAATAAA
CAGACAAATGATGTTTG

consensusID : consensus_7124#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 418
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTCTGAAAAATAAAGAAGCGATGTTTATTGTAAAAATAAAAATTAGATTGATTGATTGATAGGGATTTTTACAAAGAAACTAATGTTGGTCATCAAGTTGTCTAGATCTGCAGACGAGATTTTCCAGACAACCGTCATATACCAAAATAGAATTTAAAGGTTCGACAACAAATTATTTGATTCACAGTCTTTGGAATTTGTAAGTGACAACTATTAATTCCAAAGACTGTTTAACCTCATCCTCCACCAGCCATTGGTGGAGCACTTGGAGCACCTCTACAGCCTCCGAATCCACCAAAACGTCCAGGTGGCCGAGT-GGGTCTTCCATCCCATGAATTTCCTTGATTAGATGTTTTCTGGCGAAAAAGGTCTAAAGGTAAGAGGGTCTGAATATACA]

[+] EMBL AI395261             [TTTTTTTTTTTTTTTTTTTTTTTCTGAAAAATAAAGAAGCGATGTTTATTGTAAAAATAAAAATTAGATTGATTGATTGATAGGGATTTTTACAAAGAAACTAATGTTGGTCATCAAGTTGTCTAGATCTGCAGACGAGATTTTCCAGACAACCGTCATATACCAAAATAGAATTTAAAGGTTCGACAACAAATTATTTGATTCACAGTCTTTGGAATTTGTAAGTGACAACTATTAATTCCAAAGACTGTTTAACCTCATCCTCCACCAGCCATTGGTGGAGCACTTGGAGCACCTCTACAGCCTCCGAATCCACCAAAACGTCCAGGTGGCCGAGT GGGTCTTCCATCCCATGAATTTCCTTGATTAGATGTTTTCTGGCGAAAAAGGTCTAAAGGTAAGAGGGTCTGAATATACA]
[+] EMBL AI395270             [TTTTTTTTTTTTTTTTTTTTTTTCTGAAAAATAAAGAAGCGATGTTTATTGTAAAAATAAAAATTAGATTGATTGATTGATAGGGATTTTTACAAAGAAACTAATGTTGGTCATCAAGTTGTCTAGATCTGCAGACGAGATTTTCCAGACAACCGTCATATACCAAAATAGAATTTAAAGGTTCGACAACAAATTATTTGATTCACAGTCTTTGGAATTTGTAAGTGACAACTATTAATTCCAAAGACTGTTTAACCTCATCCTCCACCAGCCATTGGTGGAGCACTTGGNGCACCTCTACAGCCTCCGAATCCACCAGAACGTCCAGGTGCGCGAGTCGGGTCTTCCATCCCATGGAATTCCTTGATTAGATGGTTTCTGGCGAAATAGGTCAACAG                     ]




>consensus_7124#1
TTTTTTTTTTTTTTTTTTTTTTTCTGAAAAATAAAGAAGCGATGTTTATTGTAAAAATAA
AAATTAGATTGATTGATTGATAGGGATTTTTACAAAGAAACTAATGTTGGTCATCAAGTT
GTCTAGATCTGCAGACGAGATTTTCCAGACAACCGTCATATACCAAAATAGAATTTAAAG
GTTCGACAACAAATTATTTGATTCACAGTCTTTGGAATTTGTAAGTGACAACTATTAATT
CCAAAGACTGTTTAACCTCATCCTCCACCAGCCATTGGTGGAGCACTTGGAGCACCTCTA
CAGCCTCCGAATCCACCAAAACGTCCAGGTGGCCGAGTGGGTCTTCCATCCCATGAATTT
CCTTGATTAGATGTTTTCTGGCGAAAAAGGTCTAAAGGTAAGAGGGTCTGAATATACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7124#0      TTTTTTTTTTTTTTTTTTTTNTAAGCTTTCTGGAAAATAAAGAAGCGATGTTTATTGTAA 60
consensus_7124#1      --TTTTTTTTTTTTTTTTTTTT----TTTCTGAAAAATAAAGAAGCGATGTTTATTGTAA 54
                        ****************** *    ****** ***************************

consensus_7124#0      AAATAAAAATTAGATTGATTGAT----AGGGATTTTTACAAAGAAAATAATGTTGGTCAT 116
consensus_7124#1      AAATAAAAATTAGATTGATTGATTGATAGGGATTTTTACAAAGAAACTAATGTTGGTCAT 114
                      ***********************    ******************* *************

consensus_7124#0      CAAGTTGCCTAGATCTGCAGACGAGATTTTCCAGACAACCGTCATATACCCAGATATGAT 176
consensus_7124#1      CAAGTTGTCTAGATCTGCAGACGAGATTTTCCAGACAACCGTCATATACCAAAATAGAAT 174
                      ******* ****************************************** * ***  **

consensus_7124#0      TTAAATGTTTGACAACAAATTATTCGATTCACAGTCTTTGGAATTTGTAATTGACTACTA 236
consensus_7124#1      TTAAAGGTTCGACAACAAATTATTTGATTCACAGTCTTTGGAATTTGTAAGTGACAACTA 234
                      ***** *** ************** ************************* **** ****

consensus_7124#0      TTAATTCCAAAGACTGTTTAACCTCATCCTCCACCAGCCATTGGTGGAGCACTTGGAGCA 296
consensus_7124#1      TTAATTCCAAAGACTGTTTAACCTCATCCTCCACCAGCCATTGGTGGAGCACTTGGAGCA 294
                      ************************************************************

consensus_7124#0      CCTCTACAGCCTCCAAATCCACCAAAACGTCCAGGTGGCCGAGGTGGTCTTCCATCCCAT 356
consensus_7124#1      CCTCTACAGCCTCCGAATCCACCAAAACGTCCAGGTGGCCGAGTGGGTCTTCCATCCCAT 354
                      ************** ****************************  ***************

consensus_7124#0      GAATTTCTTTGGACTAGATGTTTTCCTGGCGAAAAAGGTCTAAAGGTAAGAGTGTCCGAA 416
consensus_7124#1      GAATTTCCTTG-ATTAGATGTTTTC-TGGCGAAAAAGGTCTAAAGGTAAGAGGGTCTGAA 412
                      ******* *** * *********** ************************** *** ***

consensus_7124#0      TAAACAGACAAATGATGTTTG 437
consensus_7124#1      TATACA--------------- 418
                      ** ***