cluster # 7126

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Schistosoma mansoni
cluster # 7126 cluster # 7126 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7126#0 length = 343 sequences # 1

consensus_7126#1 length = 309 sequences # 2
consensus_7126#2 length = 174 sequences # 1

consensusID : consensus_7126#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 343
fasta sequence

                              [TCAGTTGATAATCCACACGACGTTGTTGCATCACTAGACGAGACAATTAATTCATCTTGTCAAGATAGTTCTGGGTTGAATGAAACTTCTTCAATATCCGGCAGCGGAGGTGGTGACACATCTATCAACTTTCCTTCGCCAGGATTATCTAAACGTGATTCTATTTCATCAATGTCAGTTGGATCCACATGTCAAACTCCTGTTGATTCTTATTTACAATCTGGTATTGGTCAAACAGACAAAATTAAATCTAATGGAGAGGAGTTTGGGATTATGGGAAATGATTCGCACTAACTTAAAACCTAACCCCGATTTATCTCCCCAAATACCTCCATCCAATGCA]

[+] EMBL CD155562             [TCAGTTGATAATCCACACGACGTTGTTGCATCACTAGACGAGACAATTAATTCATCTTGTCAAGATAGTTCTGGGTTGAATGAAACTTCTTCAATATCCGGCAGCGGAGGTGGTGACACATCTATCAACTTTCCTTCGCCAGGATTATCTAAACGTGATTCTATTTCATCAATGTCAGTTGGATCCACATGTCAAACTCCTGTTGATTCTTATTTACAATCTGGTATTGGTCAAACAGACAAAATTAAATCTAATGGAGAGGAGTTTGGGATTATGGGAAATGATTCGCACTAACTTAAAACCTAACCCCGATTTATCTCCCCAAATACCTCCATCCAATGCA]




>consensus_7126#0
TCAGTTGATAATCCACACGACGTTGTTGCATCACTAGACGAGACAATTAATTCATCTTGT
CAAGATAGTTCTGGGTTGAATGAAACTTCTTCAATATCCGGCAGCGGAGGTGGTGACACA
TCTATCAACTTTCCTTCGCCAGGATTATCTAAACGTGATTCTATTTCATCAATGTCAGTT
GGATCCACATGTCAAACTCCTGTTGATTCTTATTTACAATCTGGTATTGGTCAAACAGAC
AAAATTAAATCTAATGGAGAGGAGTTTGGGATTATGGGAAATGATTCGCACTAACTTAAA
ACCTAACCCCGATTTATCTCCCCAAATACCTCCATCCAATGCA

consensusID : consensus_7126#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 309
fasta sequence

                              [AATTCATCTTGTCAAGATAGTTCTGGGTTGAATGAAACTTCTTCAATATCCGGCAGCGGAGGTGGTGACACATCTATCAACTTTCCTACGCCAGGATTATCTAAACGTGATTCTATTTCATCAATGTCAGTTGGATCCACATGTCAAACTCCTGTTGATTCTTATTTACGATCTGGTATTGGTCAAACAGGCAAAATTAAATCTAATGGAGAGGAGTTTGGGATTATGGGAAATGATTCGCGTTATGTAAAACAAATGAAAAATCTATACGAAGGAAGTGAAATAATTCAAGAAACAATTCCAACGTCT]

[+] EMBL CD164605             [AATTCATCTTGTCAAGATAGTTCTGGGTTGAATGAAACTTCTTCAATATCCGGCAGCGGAGGTGGTGACACATCTATCAACTTTCCTACGCCAGGATTATCTAAACGTGATTCTATTTCATCAATGTCAGTTGGATCCACATGTCAAACTCCTGTTGATTCTTATTTACGATCTGGTATTGGTCAAACAGGCAAAATTAAATCTAATGGAGAGGAGTTTGGGATTATGGGAAATGATTCGCGTTATGTAAAACAAATGAAAAATCTATACGAAGGAAGTGAAATAATTCAAGAAACAATTCCAACGTCT]
[+] EMBL CD164541             [AATTCATCTTGTCAAGATAGTTCTGGGTTGAATGAAACTTCTTCAATATCCGGCAGCGGAGGTGGTGACACATCTATCAACTTTCCTTCGCCAGGATTATCTAAACGTGATTCTATTTCATCAATGTCAGTTGGATCCACATGTCAAACTCCTGTTGATTCTTATTTACGATCTGGTATTGGTCAAACAGACAAAATTAAATCTAATGGAGAGGAGTTTGGGATTATGGGAAATGATTCGCGTTATGTA                                                            ]




>consensus_7126#1
AATTCATCTTGTCAAGATAGTTCTGGGTTGAATGAAACTTCTTCAATATCCGGCAGCGGA
GGTGGTGACACATCTATCAACTTTCCTACGCCAGGATTATCTAAACGTGATTCTATTTCA
TCAATGTCAGTTGGATCCACATGTCAAACTCCTGTTGATTCTTATTTACGATCTGGTATT
GGTCAAACAGGCAAAATTAAATCTAATGGAGAGGAGTTTGGGATTATGGGAAATGATTCG
CGTTATGTAAAACAAATGAAAAATCTATACGAAGGAAGTGAAATAATTCAAGAAACAATT
CCAACGTCT

consensusID : consensus_7126#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 174
fasta sequence

                              [ATGCAGGTAGATTTAAGGAAATATTCGAAACGACACTATCACTTCGAGACGTTGGAATTGTTTCTTGAATTATTTCACTTCCTTCGTATAGATTTTACATTTGTTTTACATAACCTTGTTTAATTGTTATACTTAAGCGATGACGTAATGATGATTTCGAATCTAATGGAACTT]

[+] EMBL CD179864             [ATGCAGGTAGATTTAAGGAAATATTCGAAACGACACTATCACTTCGAGACGTTGGAATTGTTTCTTGAATTATTTCACTTCCTTCGTATAGATTTTACATTTGTTTTACATAACCTTGTTTAATTGTTATACTTAAGCGATGACGTAATGATGATTTCGAATCTAATGGAACTT]




>consensus_7126#2
ATGCAGGTAGATTTAAGGAAATATTCGAAACGACACTATCACTTCGAGACGTTGGAATTG
TTTCTTGAATTATTTCACTTCCTTCGTATAGATTTTACATTTGTTTTACATAACCTTGTT
TAATTGTTATACTTAAGCGATGACGTAATGATGATTTCGAATCTAATGGAACTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7126#0      TCAGTTGATAATCCACACGACGTTGTTGCATCACTAGACGAGACAATTAATTCATCTTGT 60
consensus_7126#1      ------------------------------------------------AATTCATCTTGT 12
consensus_7126#2      ------------------------------------------------------------
                                                                                  

consensus_7126#0      CAAGATAGTTCTGGGTTGAATGAAACTTCTTCAATATCCGGCAGCGGAGGTGGTGACACA 120
consensus_7126#1      CAAGATAGTTCTGGGTTGAATGAAACTTCTTCAATATCCGGCAGCGGAGGTGGTGACACA 72
consensus_7126#2      -------------------ATGCAG----GTAGATTTAAGGAAATATTCGAAACGACAC- 36
                                         *** *      *  ** *  ** *      *    ***** 

consensus_7126#0      TCTATCAACTTTCCTTCGCCAGGATTATCTAA-ACGTGATTCTATTTCATCAATGTCAGT 179
consensus_7126#1      TCTATCAACTTTCCTACGCCAGGATTATCTAA-ACGTGATTCTATTTCATCAATGTCAGT 131
consensus_7126#2      --TATCA-CTTCGAGACGTTGGAATTGTTTCTTGAATTATTTCACTTCCTTCGTATAGAT 93
                        ***** ***     **   * *** * *      * ***  * *** *   * *   *

consensus_7126#0      TGGATCCACATGTCAAACTCCTGTTGATTCTTATTTACAATCTGGTATTGGTCAAACAGA 239
consensus_7126#1      TGGATCCACATGTCAAACTCCTGTTGATTCTTATTTACGATCTGGTATTGGTCAAACAGG 191
consensus_7126#2      TTTACATTTGTTTTACATAACC-TTGTTTAATTGTTATACTTAAGCGATGACGTAAT-GA 151
                      *  *      * * * *   *  *** **  *  ***   *   *   **    **  * 

consensus_7126#0      CAAAATTAAATCTAATGGAGAGGAGTTTGGGATTATGGGAAATGATTCGCACTAACTTAA 299
consensus_7126#1      CAAAATTAAATCTAATGGAGAGGAGTTTGGGATTATGGGAAATGATTCGCGTTA-TGTAA 250
consensus_7126#2      TGATTTCGAATCTAATGGAACTT------------------------------------- 174
                        *  *  ***********                                         

consensus_7126#0      AACCTAACCCCGATTTAT-CTCCCCAAATACCTCCATCCAATGCA-------------- 343
consensus_7126#1      AACAAATGAAAAATCTATACGAAGGAAGTGAAATAATTCAAGAAACAATTCCAACGTCT 309
consensus_7126#2      -----------------------------------------------------------