These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7130#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 425 fasta sequence [TGTCTGGAGATTTTGAAATCCGTAAACCAGTAGAGCTCGGAGCTATACAACATCCAACAACGACATAATTATGCCAAAGAGGAATGAACTGCTCACGTTCATTCGCAGGTTTTTTACTTCCAGTTCGGAGTAACGAGGATGCTCGATTTTCAGCCATTTGTGCGCTTGGGTCAATTAAAGGAAAAATAGTATTTATTCGTTGAAATAATATTGACCAAGCAGATTTGATGGCCATGGGACAACTTGTAGGCAAATTAGATGAGTTGAATACAATAGAAAGACAAGTAGCCCATACATCTGTGACAGCCACACGTTCTTGTATAGGCTGCATAATGTAAGCCTGTTGAGTATGCTGAATTTGTTGATTATACTGAGATGCTCTTCGATGAACAGGTGTTGTAGATAAATACGACTTAGAAGTTTGT] [+] EMBL CD121867 [TGTCTGGAGATTTTGAAATCCGTAAACCAGTAGAGCTCGGAGCTATACAACATCCAACAACGACATAATTATGCCAAAGAGGAATGAACTGCTCACGTTCATTCGCAGGTTTTTTACTTCCAGTTCGGAGTAACGAGGATGCTCGATTTTCAGCCATTTGTGCGCTTGGGTCAATTAAAGGAAAAATAGTATTTATTCGTTGAAATAATATTGACCAAGCAGATTTGATGGCCATGGGACAACTTGTAGGCAAATTAGATGAGTTGAATACAATAGAAAGACAAGTAGCCCATACATCTGTGACAGCCACACGTTCTTGTATAGGCTGCATAATGTAAGCCTGTTGAGTATGCTGAATTTGTTGATTATACTGAGATGCTCTTCGATGAACAGGTGTTGTAGATAAATACGACTTAGAAGTTTGT] [+] EMBL CD121869 [TGTCTGGAGATTTTGAAATCCGTAAACCAGTAGAGCTCGGAGCTATACAACATCCAACAACGACATAATTATGCCAAAGAGGAATGAACTGCTCACGTTCATTCGCAGGTTTTTTACTTCCAGTTCGGAGTAACGAGGATGCTCGATTTTCAGCCATCTGTGCGCTTGGGTCAATTAAAGGAAAAATAGTATTTATTCGTTGAAATAATATTGACCAAGCAGATTTGATGGCCATGGGACAACTTGTAGGCAAATTAGATGAGTTGAATACAATAGAAAGACAAGTAGCCCATACATCTGTGACAGCCACACGTTCTTGTATAGGCTGCATAATGTAAGCCTGTTGAGTATGCTGAATTTGTTGATTATACTGAGATGCTCTTCGATGAACAGGTGTTGTAGATAAATACGACTTAGAAG ] [+] EMBL CD121985 [TGTCTGGAGATTTTGAAATCCGTAAACCAGTAGAGCTCGGAGCTATACAACATCCAACAACGACATAATTATGCCAAAGAGGAATGAACTGCTCACGTTCATTCGCAGGTTTTTTACTTCCAGTTCGGAGTAACGAGGATGCTCGATTTTCAGCCATTTGTGCGCTTGGGTCAATTAAAGGAAAAATAGTATTTATTCGTTGAAATAATATTGACCAAGCAGATTTGATGGCCATGGGACAACTTGTAGGCAAATTAGATGAGTTGAATACAATAGAAAGACAAGTAGCCCATACATCTGTGACAGCCACACGTTCTTGTATAGGCTGCATAATGTAAGCCTGTTGAGTATGCTGAATTTGTTGA ] consensusID : consensus_7130#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 412 fasta sequence [TAATTTGCCTACAAGTTGTCCCATGGCCATCAAATCTGCTTGGTCAATATTATTTCAACGAATAAATACTATTTTTCCTTTAATTGACCCAAGGCAAGTCTTTTTACTTACTTTTTTCATTTCCATTAAATCAAAGCTAGTCATTTGATTCAGGGTATTTTCTGTTTTTGTTAAGGTTTATCTTTATAGAGAGAGAAATAAAGTTGTTTCCGATGTAACGTTACTCGTCGACAGTTATTTGCTACCCGAAAACGCTACCCTAGTACTATACGACATGGTACTATTTTTATAGTTATTCTTTTCCGGAGTTTTTCTCTGTGTGCTTACGCTTTATAAAGACTTTGTCACTTTTTTATACTTCACTTGGTATATATCCTACAGATATATTTACTGAAAGCTCACTTTTTATATT] [+] EMBL CD111080 [TAATTTGCCTACAAGTTGTCCCATGGCCATCAAATCTGCTTGGTCAATATTATTTCAACGAATAAATACTATTTTTCCTTTAATTGACCCAAGGCAAGTCTTTTTACTTACTTTTTTCATTTCCATTAAATCAAAGCTAGTCATTTGATTCAGGGTATTTTCTGTTTTTGTTAAGGTTTATCTTTATAGAGAGAGAAATAAAGTTGTTTCCGATGTAACGTTACTCGTCGACAGTTATTTGCTACCCGAAAACGCTACCCTAGTACTATACGACATGGTACTATTTTTATAGTTATTCTTTTCCGGAGTTTTTCTCTGTGTGCTTACGCTTTATAAAGACTTTGTCACTTTTTTATACTTCACTTGGTATATATCCTACAGATATATTTACTGAAAGCTCACTTTTTATATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7130#0 -----TGTCTGGAGATTTTGAAATCCGTAAACCAGTAGAGCTCGGAGCTATACAACATCC 55 consensus_7130#1 TAATTTGCCTACAAGTTGTCCCAT--GGCCATCAAATCTGCTTGGT-CAATATTATTTCA 57 ** ** * ** * ** * * ** *** ** * *** * ** consensus_7130#0 AACAACGA-CATAATTATGCCAAAGAGGAATGAACTGCTCACGTTCATTCGCAGGTTTTT 114 consensus_7130#1 ACGAATAAATACTATTTTTCCTTTAATTGACCCAAGGCAAGTCTTTTTACTTACTTTTTT 117 * ** * * *** * ** * * * ** ** * * * ***** consensus_7130#0 TACTTCCAGT---TCGGAG-TAACGAGGATGCTCG----ATTTTCAGCCATTTGTGCG-C 165 consensus_7130#1 CATTTCCATTAAATCAAAGCTAGTCATTTGATTCAGGGTATTTTCTGTTTTTGTTAAGGT 177 * ***** * ** ** ** * ** ****** * ** * * consensus_7130#0 TTGGGTCAATTAAAGGAAAAATAGTATTTATTCGTTGAAATAATATTGACCAAGCAGATT 225 consensus_7130#1 TTATCTTTATAGAGAGAGAAATAAAGTTGTTTC--CGATGTAACGTTACTCGTCGACAGT 235 ** * ** * ** ***** ** *** ** *** ** * * * * consensus_7130#0 TGATGGCCATGGGACAACTTGTAGGCAAATTAGATGAGTTGAATACAATAGAAAGACAAG 285 consensus_7130#1 TATTTGCTACCCGAAAAC-----GCTACCCTAGTACTATACGACATGGTACTATTTTTA- 289 * * ** * ** *** * * *** * * * ** * * consensus_7130#0 TAGCCCATACATCTGTGACAGCCACACGTTCTTGTATAGGCTGCATAATG--TAAGCCTG 343 consensus_7130#1 TAGTT-ATTCTTTTCCGGAGTTTTTCTCTGTGTGCTTACGCTTTATAAAGACTTTGTCAC 348 *** ** * * * * * ** ** *** **** * * * * consensus_7130#0 TTGAGTATGCTGAATTTGTTGATTATACTGAGATGCTCTTCGATGAACAGGTGTTGTAGA 403 consensus_7130#1 TTTTTTATACTTCACTTGGTATATATCCTACAGATATATTTACTGAAAGCTCACTTTTTA 408 ** *** ** * *** * *** ** * ** **** * * * consensus_7130#0 TAAATACGACTTAGAAGTTTGT 425 consensus_7130#1 TATT------------------ 412 ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||