cluster # 7133

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Schistosoma mansoni
cluster # 7133 cluster # 7133 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7133#0 length = 528 sequences # 3

consensus_7133#1 length = 240 sequences # 1

consensusID : consensus_7133#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 528
fasta sequence

                              [GTTAAACACGATTTTTCGCTATTTTTCGAAAGTTTGTGTGTTTTGCCTATTTCTTTTCTGAATCCGTCATTCACTTCTCATATAATCTATCATCTTTTCTCCATCTTTTACTGTAATACTCGCCACTGCATTTACTTTCACTTTGTTTCTTAACCATTTTCTATGCATGCTACATTCCTATATTAGACTGTAGAACACGGCTTTTCATCATATTTTGAAAGTTTGTGTGTTTTGCCTAATTCTTTTCTGAATCCGTCATTCACTTCTCGTATAATCTATCATCTTTTCTCCATCTTTTACTGTAATACTCGCCACTGCATTTACTTTCACTTTGTTTCTTAACCATTTTCTATGCATGCTACATTCCTATATTAGACTGTAGAACACGGCTTTTCATCATATTTTGAAAGTTTGTGTGTTTTGCCTAATTCTTTTCTGAATCCGTCATTCACTTCTCATATAATCTATCATCTTTTCTCTATCTTTTACTGTAATACTCGCCACTGCATTTACTTTCACTTTGTTTCT]

[+] EMBL CD137272             [GTTAAACACGATTTTTCGCTATTTTTCGAAAGTTTGTGTGTTTTGCCTATTTCTTTTCTGAATCCGTCACCCACTTCTCATATAACCTATCATCTTTTCTCCATCTTTTACTGTAATACTCACCACTGCATTTACTTTCACTTTGTTTCTTAACCATTTTCTATGCATGCTACATTCCTATATTAGACTGTAGAACACGGCTTTTCATCATATTTTGAAAGTTTGTGTGTTTTGCCTAATTCTTTTCTGAATCCGTCATTCACTTCTCATATAATCTATCATCTTTTCTCCATCTTTTACTGTAATACTCGCCACTGCATTTACTTTCACTTTGTTTCTTAACCATTTTCTATGCATGCTACATTCCTATATTAGACTGTAGAACACGGCTTTTCATCATATTTTGAAAGTTTGTGTGTCTTGCCTAATTCTTTTCTGAATCCGTCATTCACTTCTCATATAATCTATCATCTTTTCTCCATCTTTTACTGTAATACTCGCCACTGCATTTACTTTCACTTTGTTTCT]
[-] EMBL CD195127             [                                              cntaaTCTNTTCTGAATCCGTCATTCACTTCTCATATAATCTATCATCTTNTCTCCATCTTTTACTGTAATACTCGCCACTGCATTTACTTTCACTTTGTTTCTTAACCATTTTCTATGCATGCTACATTCCTATATTAGACTGTAGAACACGGCTTTTCATCATATTTTGAAAGTTTGTGTGTTTTGCCTAATTCTTTTCTGAATCCGTCATTCACTTCTCGTATAATCTATCATCTTTTCTCCATCTTTTACTGTAATACTCGCCACTGCATTTACTTTCACTTTGTTTCTTAACCATTTTCTATGCATGCTACATTCCTATATTAGACTGTAGAACACGGCTTTTCATCATATTTTGAAAGTTTGTGTGTTTTGCCTAATTCTTTTCTGAATCCGTCATTCACTTCTCATATAATCTATCATCTTTTCTCTATCTTTTACTGTAATACTCGCCACTGCA                    ]
[-] EMBL CD195040             [                                                      TTTCTGAATCCGTCATTCACTTCTCATATAATCTATCATCTTTTCTCCATCTTTTACTGTAATACTCGCCACTGCATTTACTTTCACTTTGTTTCTTAACCATTTTCTATGCATGCTACATTCCTATATTAGACTGTAGAACACGGCTTTTCATCATATTTTGAAAGTTTGTGTGTTTTGCCTAATTCTTTTCTGAATCCGTCATTCACTTCTCGTATAATCTATCATCTTTTCTCCATCTTTTACTGTAATACTCGCCACTGCATTTACTTTCACTTTGTTTCTTAACCATTTTCTATGCATGCTACATTCCTATATTAGACTGTAGAACACGGCTTTTCATCATATTTTGAAAGTTTGTGTGTTTTGCCTAATTCTTTTCTGAATCCGTCATTCACTTCTCATATAATCTATCATCTTTTCTCTATCTTTTACTGTAATACTCGCCACTGCA                    ]




>consensus_7133#0
GTTAAACACGATTTTTCGCTATTTTTCGAAAGTTTGTGTGTTTTGCCTATTTCTTTTCTG
AATCCGTCATTCACTTCTCATATAATCTATCATCTTTTCTCCATCTTTTACTGTAATACT
CGCCACTGCATTTACTTTCACTTTGTTTCTTAACCATTTTCTATGCATGCTACATTCCTA
TATTAGACTGTAGAACACGGCTTTTCATCATATTTTGAAAGTTTGTGTGTTTTGCCTAAT
TCTTTTCTGAATCCGTCATTCACTTCTCGTATAATCTATCATCTTTTCTCCATCTTTTAC
TGTAATACTCGCCACTGCATTTACTTTCACTTTGTTTCTTAACCATTTTCTATGCATGCT
ACATTCCTATATTAGACTGTAGAACACGGCTTTTCATCATATTTTGAAAGTTTGTGTGTT
TTGCCTAATTCTTTTCTGAATCCGTCATTCACTTCTCATATAATCTATCATCTTTTCTCT
ATCTTTTACTGTAATACTCGCCACTGCATTTACTTTCACTTTGTTTCT

consensusID : consensus_7133#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 240
fasta sequence

                              [CAAGCCGCTGTTATCCATATCAATAATTTTAGAGGTCATTTTAGTTTCCGTGATCACTGCTATGTGTATGGACGAGGTAATCAACCACACTACACGCGAACATGGGGCAAATATTATGAAAGTGTGTGTGTTTTGACTATTTCGTTTTTGAATCCATCACCCACTTCTCATATAATCTATCATCTTTTCTCCATCTTTTACTGTAATACTCGCCACTGCATTTACTTTCACTTTGTTTCT]

[-] EMBL CD195374             [CAAGCCGCTGTTATCCATATCAATAATTTTAGAGGTCATTTTAGTTTCCGTGATCACTGCTATGTGTATGGACGAGGTAATCAACCACACTACACGCGAACATGGGGCAAATATTATGAAAGTGTGTGTGTTTTGACTATTTCGTTTTTGAATCCATCACCCACTTCTCATATAATCTATCATCTTTTCTCCATCTTTTACTGTAATACTCGCCACTGCATTTACTTTCACTTTGTTTCT]




>consensus_7133#1
CAAGCCGCTGTTATCCATATCAATAATTTTAGAGGTCATTTTAGTTTCCGTGATCACTGC
TATGTGTATGGACGAGGTAATCAACCACACTACACGCGAACATGGGGCAAATATTATGAA
AGTGTGTGTGTTTTGACTATTTCGTTTTTGAATCCATCACCCACTTCTCATATAATCTAT
CATCTTTTCTCCATCTTTTACTGTAATACTCGCCACTGCATTTACTTTCACTTTGTTTCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7133#0      GTTAAACACGATTTTTCGCTATTTTTCGAAAGTTTGTGTGTTTTGCCTATTTCTTTTCTG 60
consensus_7133#1      ------------------------------------------------------------
                                                                                  

consensus_7133#0      AATCCGTCATTCACTTCTCATATAATCTATCATCTTTTCTCCATCTTTTACTGTAATACT 120
consensus_7133#1      ------------------------------------------------------------
                                                                                  

consensus_7133#0      CGCCACTGCATTTACTTTCACTTTGTTTCTTAACCATTTTCTATGCATGCTACATTCCTA 180
consensus_7133#1      ------------------------------------------------------------
                                                                                  

consensus_7133#0      TATTAGACTGTAGAACACGGCTTTTCATCATATTTTGAAAGTTTGTGTGTTTTGCCTAAT 240
consensus_7133#1      ------------------------------------------------------------
                                                                                  

consensus_7133#0      TCTTTTCTGAATCCGTCATTCACTTCTCGTATAATCTATCATCTTTTCTCCATCTTTTAC 300
consensus_7133#1      -----------------------------------CAAGCCGCTGTTATCCATAT----C 21
                                                         * * *  ** ** ***** *    *

consensus_7133#0      TGTAATACTCGCCACTGCATTTACTTTCACTTTGTTTCTTAACCATTTTCTATGCATGCT 360
consensus_7133#1      AATAATTTTAGAGGTCATTTTAGTTTCCGTGATCACTGCTA-----TGTGTATGGACGAG 76
                        ****  * *        **   ** *    *   *  **     * * **** * *  

consensus_7133#0      ACATTC--CTATATTAGACTGTAGAACACGGCTTTTCATCATATTTTGAAAGTTTGTGTG 418
consensus_7133#1      GTAATCAACCACACTACACGCGAACATGGGGC------AAATATTATGAAAGTGTGTGTG 130
                        * **  * * * ** **   *  *   ***        ***** ******* ******

consensus_7133#0      TTTTGCCTAATTCTTTTCTGAATCCGTCATTCACTTCTCATATAATCTATCATCTTTTCT 478
consensus_7133#1      TTTTGACTATTTCGTTTTTGAATCCATCACCCACTTCTCATATAATCTATCATCTTTTCT 190
                      ***** *** *** *** ******* ***  *****************************

consensus_7133#0      CTATCTTTTACTGTAATACTCGCCACTGCATTTACTTTCACTTTGTTTCT 528
consensus_7133#1      CCATCTTTTACTGTAATACTCGCCACTGCATTTACTTTCACTTTGTTTCT 240
                      * ************************************************