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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7136#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 695 fasta sequence
[TGAAATCCTCGGTCACAAACATCACACAATAATAAATCAGACTGAGGATCTTCCTTATCAGGTGATGGATTTTGATCTTCTGAATTTGACTGACACAAACAACATCTCTTACAGTCGACACAAAGCCAACGAATTGAAGTAATGCGTTTAACTAAATCCGGTGGCATTTTGAGACAAGTCGGATGACCCGACTGCCCACATTCCCAACAGGCAATCATTTCTTCCGCAGAGTTAGTTTTGTTGTTCAGTTCTGACGTACCCAAACATAAGCCACATATTGGAATCACCTTGGATGGCCTGCGTAGCCTTCTGTTCAGAAGTCCCCGAGATTTAACGGAGACAGATGATAATTTGGCTTCAGCTCCATGAGATGATTCAGAGGGCGTTCCTGAAGCAGTCCTTTGCCTGAGAGTTCTCTGCCCAGAACCCTGACAAACACCAGTATATTCAGTAGGACTTGAGTTCATTGGGGTATTTACATTATCATGACTTCGCAGAAGAGGTTCATTTTCAAATTTGGGGGAATATACGACAGGAACAGGAGAAAGAGATTCTATATTGCTTGAATGACCTTGGTCTAATTCTGTACACCTAATATCACCATATCGTGGAGAAAAACAAGACCGCTTCCTGGTATTCATCCTTTCATTAACGGCTTGAAATTATCAAGTATGTAGCCCGTGAAAATAAGAACA]
[-] EMBL CD195475 [TGAAATCCTCGGTCACAAACATCACACAATAATAAATCAGACTGAGGATCTTCCTTATCAGGTGATGGATTTTGATCTTCTGAATTTGACTGACACAAACAACATCTCTTACAGTCGACACAAAGCCAACGAATCGAAGTAATGCGTTTAACTAAATCCGGTGGCATTTTGAGACAAGTCGGATGACCCGACTGCCCACATTCCCAACAGGCAATCATTTCTTCCGCAGAGTTAGTTTTGTTGTTCAGTTCTGACGTACCCAAACATAAGC ]
[+] EMBL CD123457 [ TATCAGGTGATGGATTTTGATCTTCTGAATTTGACTGACACAAACAACATCTCTTACAGTCGACACAAAGCCAACGAATTGAAGTAATGCGTTTAACTAAATCCGGTGGCATTTTGAGACAAGTCGGATGACCCGACTGCCCACATTCCCAACAGGCAATCATTTCTTCCGCAGAGTTAGTTTTGTTGTTCAGTTCTGACGTACCCAAACATAAGCCACATATTGGAATCACCTTGGATGGCCTGCGTAGCCTTCTGTTCAGAAGTCCCCGAGATTTAACGGAGACAGATGATAATTTGGCTTCAGCTCCATGAGATGATTCAGAGGGCGTTCCTGAAGCAGTCCTTTGCCTGAGAGTTCTCTGCCCAGAACCCTGACAAACACCAGTATATTCAGTAGGACTTGAGTTCATTGGGGTATTTACATTATCATGACTTCGCAGAAGAGGTTCATTTTCAAATTTGGGGGAATATACGACAGGAACAGGAGAAAGAGATTCTATATTGCTTGAATGACCTTGGTCTAATTCTGTACACCTAATATCACCATATCGTGGAGAAAAACAAGACCGCTTCCTGGTATTCATCCTTTCATTAACGGCTTGAAATTATCAAGTATGTAGCCCGTGAAAATAAGAACA]
[+] EMBL CD123495 [ TATCAGGTGATGGATTTTGATCTTCTGAATTTGACTGACACAAACAACATCTCTTACAGTCGACACAAAGCCAACGAATTGAAGTAATGCGTTTAACTAAATCCGGTGGCATTTTGAGACAAGTCGGATGACCCGACTGCCCACATTCCCAACAGGCAATCATTTCTTCCGCAGAGTTAGTTTTGTTGTTCAGTTCTGACGTACCCAAACATAAGCCACATATTGGAATCACCTTGGATGGCCTGCGTAGCCTTCTGTTCAGAAGTCCCCGAGATTTAACGGAGACAGATGATAATTTGGCTTCAGCTCCATGAGATGATTCAGAGGGCGTTCCTGAAGCAGTCCTTTGCCTGAGAGTTCTCTGCCCAGAACCCTGACAAACACCAGTATATTCAGTAGGACTTGAGTTCATTGGGGTATTTACATTATCATGACTTCGCAGAAGAGGTTCATTTTCAAATTTGGGGGAATATACGACAGGAACAGGAGAAAGAGATTCTATATTGCTTGAATGACCTTGGTCTAATTCTGTACACCTAATATCACCATATCGTGGAGAAAAACAAGACCGCTTCCTGGTATTCATCCTTTCATTAACGGCTTGAAATTATCAAGTATGTAGCC ]
consensusID : consensus_7136#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 364 fasta sequence
[CATTTTCAAATTTGGGGGAATATACGACAGGAACAGGAGAAAGAGATTCTATATTGCTTGAATGACCTTGGTCTAATTCTGTACACCTAATATCACCATATCGAGGAGAAAAACAAGACCGCTTCCTGGCATTCATCCTTTCATTAACGGCTTGAAATTATCTGAGAACTGAAAGAGGTATCTCAGTAGTCTATGCACTCCATCAAATTACTAGATAAGTGAAACCCAGCTCTGTTTACTAGTCATTTCCTGAAGCCTGGTGCATGCGGTTATAAACAACTAACTTGCATCAGTCGCATAGAATGTTTTATTTACTTGGACAGAGAATACTGGATTTCACTACAAGGTCCAGACCAGTAGATCG]
[+] EMBL CD088752 [CATTTTCAAATTTGGGGGAATATACGACAGGAACAGGAGAAAGAGATTCTATATTGCTTGAATGACCTTGGTCTAATTCTGTACACCTAATATCACCATATCGAGGAGAAAAACAAGACCGCTTCCTGGCATTCATCCTTTCATTAACGGCTTGAAATTATCTGAGAACTGAAAGAGGTATCTCAGTAGTCTATGCACTCCATCAAATTACTAGATAAGTGAAACCCAGCTCTGTTTACTAGTCATTTCCTGAAGCCTGGTGCATGCGGTTATAAACAACTAACTTGCATCAGTCGCATAGAATGTTTTATTTACTTGGACAGAGAATACTGGATTTCACTACAAGGTCCAGACCAGTAGATCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7136#0 TGAAATCCTCGGTCACAAACATCACACAATAATAAATCAGACTGAGGATCTTCCTTATCA 60
consensus_7136#1 ------------------------------------------------------------
consensus_7136#0 GGTGATGGATTTTGATCTTCTGAATTTGACTGACACAAACAACATCTCTTACAGTCGACA 120
consensus_7136#1 ------------------------------------------------------------
consensus_7136#0 CAAAGCCAACGAATTGAAGTAATGCGTTTAACTAAATCCGGTGGCATTTTGAGACAAGTC 180
consensus_7136#1 --------------------------------------------CATTTTCAAATTTGGG 16
****** * * *
consensus_7136#0 GGATGACCCGACTGCCCACATTCCCAACAGGCAAT-CATTTCTTCCGCAGAGTTAGTTTT 239
consensus_7136#1 GGAATATACGACAGGA-ACAGGAGAAAGAGATTCTATATTGCTTGAATGACCTTGGTCTA 75
*** * **** * *** ** ** * *** *** ** ** *
consensus_7136#0 GTTGTTCAGTTCTGACGTACCCAAACATAAGCCACATATTGGAATCACCTTGGATGGCCT 299
consensus_7136#1 ATTCTGTACACCTAATATCACCATATCGAGGAGAAAAACAAGACCGCTTCCTGGCATTCA 135
** * * ** * * *** * * * * * * ** * *
consensus_7136#0 GCGTAGCCTT--CTGTTCAGAAGTCCCCGAGATTTAACGGAGACAGATGA-TAATTTGGC 356
consensus_7136#1 TCCTTTCATTAACGGCTTGAAATTATCTGAGAACTGAAAGAGGTATCTCAGTAGTCTA-- 193
* * * ** * * * ** * * **** * * *** * * * ** * *
consensus_7136#0 TTCAGCTCCATGAGATGATTCAGAGGGCGTTCCTGAAGCAGTCCTTTGCCTGAGAGTTCT 416
consensus_7136#1 -TGCACTCCATCAAATTACTAGATAAG------TGAAACCCAGCTCTGTTTACTAGTCAT 246
* ****** * ** * * * **** * ** ** * *** *
consensus_7136#0 CTGCCCAGAACCCTGACAAACACCAGTATATTCAGTAGGACTTGAGTTCATTGGGGTATT 476
consensus_7136#1 TT--CCTGAAGCCTGGTGCATGCGGTTATAAACAACTA-ACTTGCATCAGTCGCATAGAA 303
* ** *** **** * * **** ** ***** * * *
consensus_7136#0 TACATTATCATGACTTCGCAGAAGAGGTTCATTTTCAAATTTGGGGGAATATACGACAGG 536
consensus_7136#1 TGTTTTATT-TACTTGGACAGAGAATACTGGATTTCA--CTACAAGGTCCAGACCAGTAG 360
* **** * * **** * * ***** * ** * ** * *
consensus_7136#0 AACAGGAGAAAGAGATTCTATATTGCTTGAATGACCTTGGTCTAATTCTGTACACCTAAT 596
consensus_7136#1 ATCG-------------------------------------------------------- 364
* *
consensus_7136#0 ATCACCATATCGTGGAGAAAAACAAGACCGCTTCCTGGTATTCATCCTTTCATTAACGGC 656
consensus_7136#1 ------------------------------------------------------------
consensus_7136#0 TTGAAATTATCAAGTATGTAGCCCGTGAAAATAAGAACA 695
consensus_7136#1 ---------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||