cluster # 7153

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 7153 cluster # 7153 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7153#0 length = 812 sequences # 2

consensus_7153#1 length = 432 sequences # 1
consensus_7153#2 length = 403 sequences # 1

consensusID : consensus_7153#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 812
fasta sequence

                              [CTCCTGTTATCTTTCAGACTAATTTAGTCTTTATGTATATTGGAATACCCTACATTAAACGAAGTTTCAGGTAAAGTATTATACTAACAGAAGGCACAAATCATTTTAAGACCAGGCCTCAAAGTAAATGGACTGGTTGATGGGGAAAGCTAGAGGGGTAAGTCGTGACTTCAAGCATCNTCCTCCCAGCATCGTATCTTCCGCTGCAACAGAACCTATTCCCATTGTTCATCATAATCATTTTATCTCTCCGAATGGCACTCCGCCACTAAGTACTAGCAGTGTAGGTGCTGAAACTGACAACAGACGTTCTCCTGTTCCTGTGAAAGAGTTTTCTGCAAATGAATCTCGTGGCGGCTCAGCTGTAAAGTTTCGCGCCCCTTCACCTCTGTCTGTAAACGCTCAAGTTTCTCAGGTGTCGAGCAAGTGTTCGCAATCACCTGGGGTGTCTGTAGAAACAGAAACTCACGCTGACCCAAAAATCCCAATGTACATGAAAAATGTTTATGTTTCCCAGCAATTACCCATATTTTTGGATTCATCTTATCCTGAGTTCTGTGATGTTGTAGAGCCATTTCCAGCTATGGATACAAATGAGTGGCTTGTTGCACACACGATTGCCTTATTTGACAATATTAGTATAATATATGACGCCATATATGAGCTCTGCGGTTGCCGAAGCTTGTGGGAGTCTTTGGAAGATTCAGGGATCCACAACATCGTCTCCTCATTGTTGCTGGAAATTTCAAATAGTTCTCTTGGTGTACAGAGCGAAGACGATCGCGGCAAAAAGAACAAAAGTCTCATTGCAG]

[+] EMBL CD112307             [CTCCTGTTATCTTTCAGACTAATTTAGTCTTTATGTATATTGGAATACCCTACATTAAACGAAGTTTCAGGTAAAGTATTATACTAACAGAAGGCACAAATCATTTTAAGACCAGGCCTCAAAGTAAATGGACTGGTTGATGGGGAAAGCTAGAGGGGTAAGTCGTGACTTCAAGCATCNTCCTCCCAGCATCGTATCTTCCGCTGCAACAGAACCTATTCCCATTGTTCATCATAATCATTTTATCTCTCCGAATGGCACTCCGCCACTAAGTACTAGCAGTGTAGGTGCTGAAACTGACAACAGACGTTCTCCTGTTCCTGTGAAAGAGTTTTCTGCAAATGAATCTCGTGGCGGCTCAGCTGTAAAGTTTCGCGCCCCTTCACCTCTGTCTGTAAACGCTCAAGTTTCTCAGGTGTCGAGCAAGTGTTCGCAATCACCTGGGGTGTCTGTAGAAACAGAAACTCACGCT                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL CD112089             [                                                                                                                                                                                                                                                                                                                                                                                         CCCCTTCACCTCTGTCGGTAAACGCTCAAGTTTCTCAGGTGTCGAGCAAGTGTTCGCAATCACCTGGGGTGTCTGTAGAAACAGAAACTCACGCTGACCCAAAAATCCCAATGTACATGAAAAATGTTTATGTTTCCCAGCAATTACCCATATTTTTGGATTCATCTTATCCTGAGTTCTGTGATGTTGTAGAGCCATTTCCAGCTATGGATACAAATGAGTGGCTTGTTGCACACACGATTGCCTTATTTGACAATATTAGTATAATATATGACGCCATATATGAGCTCTGCGGTTGCCGAAGCTTGTGGGAGTCTTTGGAAGATTCAGGGATCCACAACATCGTCTCCTCATTGTTGCTGGAAATTTCAAATAGTTCTCTTGGTGTACAGAGCGAAGACGATCGCGGCAAAAAGAACAAAAGTCTCATTGCAG]




>consensus_7153#0
CTCCTGTTATCTTTCAGACTAATTTAGTCTTTATGTATATTGGAATACCCTACATTAAAC
GAAGTTTCAGGTAAAGTATTATACTAACAGAAGGCACAAATCATTTTAAGACCAGGCCTC
AAAGTAAATGGACTGGTTGATGGGGAAAGCTAGAGGGGTAAGTCGTGACTTCAAGCATCN
TCCTCCCAGCATCGTATCTTCCGCTGCAACAGAACCTATTCCCATTGTTCATCATAATCA
TTTTATCTCTCCGAATGGCACTCCGCCACTAAGTACTAGCAGTGTAGGTGCTGAAACTGA
CAACAGACGTTCTCCTGTTCCTGTGAAAGAGTTTTCTGCAAATGAATCTCGTGGCGGCTC
AGCTGTAAAGTTTCGCGCCCCTTCACCTCTGTCTGTAAACGCTCAAGTTTCTCAGGTGTC
GAGCAAGTGTTCGCAATCACCTGGGGTGTCTGTAGAAACAGAAACTCACGCTGACCCAAA
AATCCCAATGTACATGAAAAATGTTTATGTTTCCCAGCAATTACCCATATTTTTGGATTC
ATCTTATCCTGAGTTCTGTGATGTTGTAGAGCCATTTCCAGCTATGGATACAAATGAGTG
GCTTGTTGCACACACGATTGCCTTATTTGACAATATTAGTATAATATATGACGCCATATA
TGAGCTCTGCGGTTGCCGAAGCTTGTGGGAGTCTTTGGAAGATTCAGGGATCCACAACAT
CGTCTCCTCATTGTTGCTGGAAATTTCAAATAGTTCTCTTGGTGTACAGAGCGAAGACGA
TCGCGGCAAAAAGAACAAAAGTCTCATTGCAG

consensusID : consensus_7153#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 432
fasta sequence

                              [GAGGGACATACCCGAGACCGCGGAGAAGAAGCAGGAATGTAACTCCAGCTATCTACAGGACTAATATAGTCCTCAAGGAAAGGGGAAAACCCGACATAAAACGAAGTTTCAAGTAAACTATTAGACAAACAGAAGGCACAAATCATTTTAAGACTAGGCCTCAAAGTAAATGGACTGGTTGATGGGGAAAGCTAGAGGGGTAAGTCGTGGCTTCAGGCAGACCCCTCCCAGCATCGTATCTTCCGCNGCAACAGAACCTATTCCCATTGTTCATCATAATCATTTTATCTCTCCGAATGGCACTCCGCCACTAAGTACTAGCAGTGTAGGTGCTGAAACTGACAACAGACGTTCTCCTGTTCCTGTGAAAGAGTTTTCTGCAAATGAATCTCGTGGCGGCTCAGCTGTAAAGTTTCGCGCCCCTTCCATCTC]

[-] EMBL CD178322             [GAGGGACATACCCGAGACCGCGGAGAAGAAGCAGGAATGTAACTCCAGCTATCTACAGGACTAATATAGTCCTCAAGGAAAGGGGAAAACCCGACATAAAACGAAGTTTCAAGTAAACTATTAGACAAACAGAAGGCACAAATCATTTTAAGACTAGGCCTCAAAGTAAATGGACTGGTTGATGGGGAAAGCTAGAGGGGTAAGTCGTGGCTTCAGGCAGACCCCTCCCAGCATCGTATCTTCCGCNGCAACAGAACCTATTCCCATTGTTCATCATAATCATTTTATCTCTCCGAATGGCACTCCGCCACTAAGTACTAGCAGTGTAGGTGCTGAAACTGACAACAGACGTTCTCCTGTTCCTGTGAAAGAGTTTTCTGCAAATGAATCTCGTGGCGGCTCAGCTGTAAAGTTTCGCGCCCCTTCCATCTC]




>consensus_7153#1
GAGGGACATACCCGAGACCGCGGAGAAGAAGCAGGAATGTAACTCCAGCTATCTACAGGA
CTAATATAGTCCTCAAGGAAAGGGGAAAACCCGACATAAAACGAAGTTTCAAGTAAACTA
TTAGACAAACAGAAGGCACAAATCATTTTAAGACTAGGCCTCAAAGTAAATGGACTGGTT
GATGGGGAAAGCTAGAGGGGTAAGTCGTGGCTTCAGGCAGACCCCTCCCAGCATCGTATC
TTCCGCNGCAACAGAACCTATTCCCATTGTTCATCATAATCATTTTATCTCTCCGAATGG
CACTCCGCCACTAAGTACTAGCAGTGTAGGTGCTGAAACTGACAACAGACGTTCTCCTGT
TCCTGTGAAAGAGTTTTCTGCAAATGAATCTCGTGGCGGCTCAGCTGTAAAGTTTCGCGC
CCCTTCCATCTC

consensusID : consensus_7153#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 403
fasta sequence

                              [ATTTTTAACCTCAAGTCGTCTACAAGATTATTGGTTTCTGCTTTATACAGATATCCTGGATTATCTTCAGTGTATACCTGTGTATTTTGATTTTTTAGTGGTTTAATTCATTGTGTATTGATGTTACATTCTTTGTGACTGCTTAGAAGATGCCTGGATGTTACTCCTGTTATCTTTCAGACTAATTTAGTCTTTAAGTATATTGGAATACCCTACATAAAACGAAGTTTCAAGTAAACTATTATACTAACAGAAGGCACAAATCATTTTAAGACCAGGCCTCAAAGTAAATGGACTGGTTGATGGGGAAAGCTAGAGGGCAACGTATCTTCCGCTGCAACAGAACCTATTCCCATTGTTCATCATAATCATTTTATCTCTCCGAATGGCACTCCGCCACTAA]

[+] EMBL CD187563             [ATTTTTAACCTCAAGTCGTCTACAAGATTATTGGTTTCTGCTTTATACAGATATCCTGGATTATCTTCAGTGTATACCTGTGTATTTTGATTTTTTAGTGGTTTAATTCATTGTGTATTGATGTTACATTCTTTGTGACTGCTTAGAAGATGCCTGGATGTTACTCCTGTTATCTTTCAGACTAATTTAGTCTTTAAGTATATTGGAATACCCTACATAAAACGAAGTTTCAAGTAAACTATTATACTAACAGAAGGCACAAATCATTTTAAGACCAGGCCTCAAAGTAAATGGACTGGTTGATGGGGAAAGCTAGAGGGCAACGTATCTTCCGCTGCAACAGAACCTATTCCCATTGTTCATCATAATCATTTTATCTCTCCGAATGGCACTCCGCCACTAA]




>consensus_7153#2
ATTTTTAACCTCAAGTCGTCTACAAGATTATTGGTTTCTGCTTTATACAGATATCCTGGA
TTATCTTCAGTGTATACCTGTGTATTTTGATTTTTTAGTGGTTTAATTCATTGTGTATTG
ATGTTACATTCTTTGTGACTGCTTAGAAGATGCCTGGATGTTACTCCTGTTATCTTTCAG
ACTAATTTAGTCTTTAAGTATATTGGAATACCCTACATAAAACGAAGTTTCAAGTAAACT
ATTATACTAACAGAAGGCACAAATCATTTTAAGACCAGGCCTCAAAGTAAATGGACTGGT
TGATGGGGAAAGCTAGAGGGCAACGTATCTTCCGCTGCAACAGAACCTATTCCCATTGTT
CATCATAATCATTTTATCTCTCCGAATGGCACTCCGCCACTAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7153#0      ------------------------------------------------------------
consensus_7153#1      ------------------------------------------------------------
consensus_7153#2      ATTTTTAACCTCAAGTCGTCTACAAGATTATTGGTTTCTGCTTTATACAGATATCCTGGA 60
                                                                                  

consensus_7153#0      ------------------------------------------------------------
consensus_7153#1      ------------------------------------------------------------
consensus_7153#2      TTATCTTCAGTGTATACCTGTGTATTTTGATTTTTTAGTGGTTTAATTCATTGTGTATTG 120
                                                                                  

consensus_7153#0      -------------------------------------------CTCCTGTTATCTTTCAG 17
consensus_7153#1      -GAGGGACATACCCGAGACCGCGGAGAAGAAGCAGGAATGTAACTCCAGCTATCTACAGG 59
consensus_7153#2      ATGTTACATTCTTTGTGACTGCTTAGAAGATGCCTGGATGTTACTCCTGTTATCTTTCAG 180
                                                                 **** * *****    *

consensus_7153#0      ACTAATTTAGTCTTTATGTATATTGGAATACCCTACATTAAACGAAGTTTCAGGTAAAGT 77
consensus_7153#1      ACTAATATAGTCCTCAAGGAAAGGGGAAAACCCGACATAAAACGAAGTTTCAAGTAAACT 119
consensus_7153#2      ACTAATTTAGTCTTTAAGTATATTGGAATACCCTACATAAAACGAAGTTTCAAGTAAACT 240
                      ****** ***** * * * * *  **** **** **** ************* ***** *

consensus_7153#0      ATTATACTAACAGAAGGCACAAATCATTTTAAGACCAGGCCTCAAAGTAAATGGACTGGT 137
consensus_7153#1      ATTAGACAAACAGAAGGCACAAATCATTTTAAGACTAGGCCTCAAAGTAAATGGACTGGT 179
consensus_7153#2      ATTATACTAACAGAAGGCACAAATCATTTTAAGACCAGGCCTCAAAGTAAATGGACTGGT 300
                      **** ** *************************** ************************

consensus_7153#0      TGATGGGGAAAGCTAGAGGGGTAAGTCGTGACTTCAAGCATCNTCCTCCCAGCATCGTAT 197
consensus_7153#1      TGATGGGGAAAGCTAGAGGGGTAAGTCGTGGCTTCAGGCAGACCCCTCCCAGCATCGTAT 239
consensus_7153#2      TGATGGGGAAAGCTAGAGGG--------------------------------CAACGTAT 328
                      ********************                                ** *****

consensus_7153#0      CTTCCGCTGCAACAGAACCTATTCCCATTGTTCATCATAATCATTTTATCTCTCCGAATG 257
consensus_7153#1      CTTCCGCNGCAACAGAACCTATTCCCATTGTTCATCATAATCATTTTATCTCTCCGAATG 299
consensus_7153#2      CTTCCGCTGCAACAGAACCTATTCCCATTGTTCATCATAATCATTTTATCTCTCCGAATG 388
                      ******* ****************************************************

consensus_7153#0      GCACTCCGCCACTAAGTACTAGCAGTGTAGGTGCTGAAACTGACAACAGACGTTCTCCTG 317
consensus_7153#1      GCACTCCGCCACTAAGTACTAGCAGTGTAGGTGCTGAAACTGACAACAGACGTTCTCCTG 359
consensus_7153#2      GCACTCCGCCACTAA--------------------------------------------- 403
                      ***************                                             

consensus_7153#0      TTCCTGTGAAAGAGTTTTCTGCAAATGAATCTCGTGGCGGCTCAGCTGTAAAGTTTCGCG 377
consensus_7153#1      TTCCTGTGAAAGAGTTTTCTGCAAATGAATCTCGTGGCGGCTCAGCTGTAAAGTTTCGCG 419
consensus_7153#2      ------------------------------------------------------------
                                                                                  

consensus_7153#0      CCCCTTC-ACCTCTGTCTGTAAACGCTCAAGTTTCTCAGGTGTCGAGCAAGTGTTCGCAA 436
consensus_7153#1      CCCCTTCCATCTC----------------------------------------------- 432
consensus_7153#2      ------------------------------------------------------------
                                                                                  

consensus_7153#0      TCACCTGGGGTGTCTGTAGAAACAGAAACTCACGCTGACCCAAAAATCCCAATGTACATG 496
consensus_7153#1      ------------------------------------------------------------
consensus_7153#2      ------------------------------------------------------------
                                                                                  

consensus_7153#0      AAAAATGTTTATGTTTCCCAGCAATTACCCATATTTTTGGATTCATCTTATCCTGAGTTC 556
consensus_7153#1      ------------------------------------------------------------
consensus_7153#2      ------------------------------------------------------------
                                                                                  

consensus_7153#0      TGTGATGTTGTAGAGCCATTTCCAGCTATGGATACAAATGAGTGGCTTGTTGCACACACG 616
consensus_7153#1      ------------------------------------------------------------
consensus_7153#2      ------------------------------------------------------------
                                                                                  

consensus_7153#0      ATTGCCTTATTTGACAATATTAGTATAATATATGACGCCATATATGAGCTCTGCGGTTGC 676
consensus_7153#1      ------------------------------------------------------------
consensus_7153#2      ------------------------------------------------------------
                                                                                  

consensus_7153#0      CGAAGCTTGTGGGAGTCTTTGGAAGATTCAGGGATCCACAACATCGTCTCCTCATTGTTG 736
consensus_7153#1      ------------------------------------------------------------
consensus_7153#2      ------------------------------------------------------------
                                                                                  

consensus_7153#0      CTGGAAATTTCAAATAGTTCTCTTGGTGTACAGAGCGAAGACGATCGCGGCAAAAAGAAC 796
consensus_7153#1      ------------------------------------------------------------
consensus_7153#2      ------------------------------------------------------------
                                                                                  

consensus_7153#0      AAAAGTCTCATTGCAG 812
consensus_7153#1      ----------------
consensus_7153#2      ----------------