cluster # 7157

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Schistosoma mansoni
cluster # 7157 cluster # 7157 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7157#0 length = 818 sequences # 2

consensus_7157#1 length = 472 sequences # 1
consensus_7157#2 length = 451 sequences # 1

consensusID : consensus_7157#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 818
fasta sequence

                              [GAGCATGTTTTAACAATTGAGCATGATGTTCAGAGAAACGTTCAAGATTAGTAGTTAATTGATTAGATGATTCTGCTGCAGACTGATTAACTAACAAAGCAGCTGAATTTCGACGCAGTTCATCAAGCTCTGATCCAACTTTTACAAGTTCATCATAAACTTCCATGAAACGACGTAACTGTTCACGTGCACTATCTGGTAAACCACCCATAATGCGTGCACCTAGTGGGGGCATCCGACTTTTTAACTGTCGAGTGCGACGTATAAGTTGATCCAACTGACCATGAAAATTAAAGGTCTCACTCAATGCTTCTTCTAATGCTGCTTGTTTATTGCGTACACTCAGTTTCAAACGTTCCCATGCTTTATTCATTTGAATAATTTTATCTCGGATATCTGGTGTTTTTAAATCTGAAGTCTGTGATTTTCTTTTGACATCTTTATTAGTATCTATTCCAGAGGATTTGTCGATTTTCTTGCAATCAGCACGTTCTAATTTTCTTGCTTGTTCTTCTATTCTTACAACAGCTAACTGATGACTGTTGATATTGTGATGAATTATTTTAATGCGTGCTAAATCAGCTTCTAATCCTCGAATATTTGCCCGACGTATAGGTATTTGATCTACAGCTGTTTGCATTTGATCAATCCATTTAATTAATCCATCAATAGCACTTTCAAATTCACCTAAACCAAGTAAAACAGTTTGTAAACGATGACGTCTACTATTGCCGGAATCTAATAAATTGTCCCATCGTCGATTAGCTACAGTTAGATCAGATTGTAATGATGTAGTATTTTGTACTGGGACTGTTCCG]

[-] EMBL CD159700             [GAGCATGTTTTAACAATTGAGCATGATGTTCAGAGAAACGTTCAAGATTAGTAGTTAATTGATTAGATGATTCTGCTGCAGACTGATTAACTAACAAAGCAGCTGAATTTCGACGCAGTTCATCAAGCTCTGATCCAACTTTTACAAGTTCATCATAAACTTCCATGAAACGACGTAACTGTTCACGTGCACTATCTGGTAAACCACCCATAATGCGTGCACCTAGTGGGGGCATCCGACTTTTTAACTGTCGAGTGCGACGTATAAGTTGATCCAACTGACCATGAAAATTAAAGGTCTCACTCAATGCTTCTTCTAATGCTGCTTGTTTATTGCGTACACTCAGTTTCAAACGTTCCCATGCTTTATTCA                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CD183235             [                                                                                                                                                                                                                                           CCGACTTTTTAACTGTCGAGTGCGACGTATAAGTTGATCCAACTGACCATGAAAATTAAAGGTCTCACTCAATGCTTCTTCTAATGCTGCTTGTTTATTGCGTACACTCAGTTTCAAACGTTCCCATGCTTTATTCATTTGAATAATTTTATCTCGGATATCTGGTGTTTTTAAATCTGAAGTCTGTGATTTTCTTTTGACATCTTTATTAGTATCTATTCCAGAGGATTTGTCGATTTTCTTGCAATCAGCACGTTCTAATTTTCTTGCTTGTTCTTCTATTCTTACAACAGCTAACTGATGACTGTTGATATTGTGATGAATTATTTTAATGCGTGCTAAATCAGCTTCTAATCCTCGAATATTTGCCCGACGTATAGGTATTTGATCTACAGCTGTTTGCATTTGATCAATCCATTTAATTAATCCATCAATAGCACTTTCAAATTCACCTAAACCAAGTAAAACAGTTTGTAAACGATGACGTCTACTATTGCCGGAATCTAATAAATTGTCCCATCGTCGATTAGCTACAGTTAGATCAGATTGTAATGATGTAGTATTTTGTACTGGGACTGTTCCG]




>consensus_7157#0
GAGCATGTTTTAACAATTGAGCATGATGTTCAGAGAAACGTTCAAGATTAGTAGTTAATT
GATTAGATGATTCTGCTGCAGACTGATTAACTAACAAAGCAGCTGAATTTCGACGCAGTT
CATCAAGCTCTGATCCAACTTTTACAAGTTCATCATAAACTTCCATGAAACGACGTAACT
GTTCACGTGCACTATCTGGTAAACCACCCATAATGCGTGCACCTAGTGGGGGCATCCGAC
TTTTTAACTGTCGAGTGCGACGTATAAGTTGATCCAACTGACCATGAAAATTAAAGGTCT
CACTCAATGCTTCTTCTAATGCTGCTTGTTTATTGCGTACACTCAGTTTCAAACGTTCCC
ATGCTTTATTCATTTGAATAATTTTATCTCGGATATCTGGTGTTTTTAAATCTGAAGTCT
GTGATTTTCTTTTGACATCTTTATTAGTATCTATTCCAGAGGATTTGTCGATTTTCTTGC
AATCAGCACGTTCTAATTTTCTTGCTTGTTCTTCTATTCTTACAACAGCTAACTGATGAC
TGTTGATATTGTGATGAATTATTTTAATGCGTGCTAAATCAGCTTCTAATCCTCGAATAT
TTGCCCGACGTATAGGTATTTGATCTACAGCTGTTTGCATTTGATCAATCCATTTAATTA
ATCCATCAATAGCACTTTCAAATTCACCTAAACCAAGTAAAACAGTTTGTAAACGATGAC
GTCTACTATTGCCGGAATCTAATAAATTGTCCCATCGTCGATTAGCTACAGTTAGATCAG
ATTGTAATGATGTAGTATTTTGTACTGGGACTGTTCCG

consensusID : consensus_7157#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 472
fasta sequence

                              [GCATCATTTGTGATAAATGATCATGTAATTCTTCGACTTGTTTTAAACCTAATTCCATACGGTCACGAATATCTTGAGCATGTTTTAACAATTGAGCATGATGTTCAGAGAAACGTTCAAGATTAGTAGTTAATTGATTAGATGATTCTGCTGCAGACTGATTAACTAACAAAGCAGCTGAATTTCGACGCAGTTCATCAAGCTGTTTACGTAGGGAAAAAGAGTAAAAAAGCACGAGTTAACTTAAGCATGCATAAATAAAATGTAGTAATTACCATTGTCTACAATAAGCATATGACAAATAGTTGAAGTAAAGACATTATTTACCTCTGATCCAACTTTTACAAGTTCATCATAAACTTCCATGAAACGACGTAACTGTTCACGTGCACTATCTGGTAAACCACCCATAATGCGTGCACCTGGTGGGGGCATCCGACTTTTTAACTGTCGAGTGCGACGTATAAGTTGA]

[+] EMBL CD112129             [GCATCATTTGTGATAAATGATCATGTAATTCTTCGACTTGTTTTAAACCTAATTCCATACGGTCACGAATATCTTGAGCATGTTTTAACAATTGAGCATGATGTTCAGAGAAACGTTCAAGATTAGTAGTTAATTGATTAGATGATTCTGCTGCAGACTGATTAACTAACAAAGCAGCTGAATTTCGACGCAGTTCATCAAGCTGTTTACGTAGGGAAAAAGAGTAAAAAAGCACGAGTTAACTTAAGCATGCATAAATAAAATGTAGTAATTACCATTGTCTACAATAAGCATATGACAAATAGTTGAAGTAAAGACATTATTTACCTCTGATCCAACTTTTACAAGTTCATCATAAACTTCCATGAAACGACGTAACTGTTCACGTGCACTATCTGGTAAACCACCCATAATGCGTGCACCTGGTGGGGGCATCCGACTTTTTAACTGTCGAGTGCGACGTATAAGTTGA]




>consensus_7157#1
GCATCATTTGTGATAAATGATCATGTAATTCTTCGACTTGTTTTAAACCTAATTCCATAC
GGTCACGAATATCTTGAGCATGTTTTAACAATTGAGCATGATGTTCAGAGAAACGTTCAA
GATTAGTAGTTAATTGATTAGATGATTCTGCTGCAGACTGATTAACTAACAAAGCAGCTG
AATTTCGACGCAGTTCATCAAGCTGTTTACGTAGGGAAAAAGAGTAAAAAAGCACGAGTT
AACTTAAGCATGCATAAATAAAATGTAGTAATTACCATTGTCTACAATAAGCATATGACA
AATAGTTGAAGTAAAGACATTATTTACCTCTGATCCAACTTTTACAAGTTCATCATAAAC
TTCCATGAAACGACGTAACTGTTCACGTGCACTATCTGGTAAACCACCCATAATGCGTGC
ACCTGGTGGGGGCATCCGACTTTTTAACTGTCGAGTGCGACGTATAAGTTGA

consensusID : consensus_7157#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 451
fasta sequence

                              [TTTTCTTGTGACATCTTTATTAGTATCTATTCCAGAGGATTTGTCGATTTTCTTGCAATCAGCACGTTCTAATTTTCTTGCTTGTTCTTCTATTCTTACAACAGCTAACTGATGACTGTTGATATTGTGATGAATTATCTTAGTGACAAAGTAAGAGAGAGAAAAATAATTAGCCAAGAAAATTATAAAACTGCATAACTTATAAATGTTAAGCATTGATTAATAGGCAAAATTCAGACTTGATAACTTTAACTTCTGTAGTGGAAACAGCTTCAGTTGTTAGCATTGTAAACTGAGATCGCGATAACTGAGACTAAAAATCTACTAAGTTGATGAGTATAAATAAGAATTAAAAGTTGATCAAGGGCATACTATTGATAATCTTTAAATTTTCAGCCTGAAACGTTTTACACATACAGAAACTTCAATGGCTGAATTCATGAGTTGATTT]

[-] EMBL CD112305             [TTTTCTTGTGACATCTTTATTAGTATCTATTCCAGAGGATTTGTCGATTTTCTTGCAATCAGCACGTTCTAATTTTCTTGCTTGTTCTTCTATTCTTACAACAGCTAACTGATGACTGTTGATATTGTGATGAATTATCTTAGTGACAAAGTAAGAGAGAGAAAAATAATTAGCCAAGAAAATTATAAAACTGCATAACTTATAAATGTTAAGCATTGATTAATAGGCAAAATTCAGACTTGATAACTTTAACTTCTGTAGTGGAAACAGCTTCAGTTGTTAGCATTGTAAACTGAGATCGCGATAACTGAGACTAAAAATCTACTAAGTTGATGAGTATAAATAAGAATTAAAAGTTGATCAAGGGCATACTATTGATAATCTTTAAATTTTCAGCCTGAAACGTTTTACACATACAGAAACTTCAATGGCTGAATTCATGAGTTGATTT]




>consensus_7157#2
TTTTCTTGTGACATCTTTATTAGTATCTATTCCAGAGGATTTGTCGATTTTCTTGCAATC
AGCACGTTCTAATTTTCTTGCTTGTTCTTCTATTCTTACAACAGCTAACTGATGACTGTT
GATATTGTGATGAATTATCTTAGTGACAAAGTAAGAGAGAGAAAAATAATTAGCCAAGAA
AATTATAAAACTGCATAACTTATAAATGTTAAGCATTGATTAATAGGCAAAATTCAGACT
TGATAACTTTAACTTCTGTAGTGGAAACAGCTTCAGTTGTTAGCATTGTAAACTGAGATC
GCGATAACTGAGACTAAAAATCTACTAAGTTGATGAGTATAAATAAGAATTAAAAGTTGA
TCAAGGGCATACTATTGATAATCTTTAAATTTTCAGCCTGAAACGTTTTACACATACAGA
AACTTCAATGGCTGAATTCATGAGTTGATTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7157#0      ------------------------------------------------------------
consensus_7157#1      GCATCATTTGTGATAAATGATCATGTAATTCTTCGACTTGT-TTTAAACCTAATTCCATA 59
consensus_7157#2      -----------------TTTTCTTGTGACATCTTTATTAGTATCTATTCCAGAGGATTTG 43
                                                                                  

consensus_7157#0      ----------------GAGCATGTTTTAACAATTGAGCATGATGTTCAGAGAAACGTTCA 44
consensus_7157#1      CGGTCACGAATATCTTGAGCATGTTTTAACAATTGAGCATGATGTTCAGAGAAACGTTCA 119
consensus_7157#2      TCGATTTTCTTGCAATCAGCACGTTCTAATTTTCTTGCTTGTTCTTC-----TATTCTTA 98
                                       **** *** ***   *   ** ** * ***      *   * *

consensus_7157#0      AGATTAGTAGTTAATTGATTAGATGATTCTGCTGCAGACTGATTAACTAACAAAGCAGCT 104
consensus_7157#1      AGATTAGTAGTTAATTGATTAGATGATTCTGCTGCAGACTGATTAACTAACAAAGCAGCT 179
consensus_7157#2      CAACAGCTAACTGAT-GACT-GTTGATATTGTGATGAATTATCTTAGTGACAAAGTAAGA 156
                        *    **  * ** ** * * ****  **      * *   * * * ****** *   

consensus_7157#0      GAATTTCGACGCAGTTCATCAAGCTCTGATCCAACTTTTACAAGTTCATCATAAACTTCC 164
consensus_7157#1      GAATTTCGACGCAGTTCATCAAGCT---GTTTA---CGTAGGGAAAAAGAGTAAAAAAGC 233
consensus_7157#2      GAGAGAAAA-ATAATTAGCCAAGAA---AATTA-----TAAAACTGCATAACTTATAAAT 207
                      **      *   * **   ****         *     **       *      *     

consensus_7157#0      ATGAAACGACG-TAACTGTTCACGTGCACTATCTGGTAAACCACCCATAATGCGTGCACC 223
consensus_7157#1      ACGAGTTAACT-TAAGCATGCATAAATAAAATGTAGTAA-TTACC---ATTGTCTACAAT 288
consensus_7157#2      GTTAAGCATTGATTAATAGGCAAAATTCAGACTTGATAACTT-----TAACTTCTGTAGT 262
                         *        * *     **        *  *  ***         *     *  *  

consensus_7157#0      TAGTGGGGGCATCCGACTTTTTAACTGTCGAGTGCGACGTATAAGTTGATCCAACTGACC 283
consensus_7157#1      ------AAGCATATGACA----AATAGTTGAAGTAAAGACATTATTTACCTC---TGATC 335
consensus_7157#2      G---GAAACAGCTTCAGTTGTTAGCATTGTAAACTGAGATCGCGATAACTGA----GACT 315
                                     *      *    *  *     *        *          **  

consensus_7157#0      ATGAAAATTAAAGGTCTCACTCAATGCTTCTTCTAATGCTGCTTGTTTATTGCGTACACT 343
consensus_7157#1      -CAACTTTTACAAGTTCATCATAAACTTCCATGAAACGACG-TAACTGTTCACGTGCACT 393
consensus_7157#2      AAAAATCTACTAAGTTGAT----GAGTATAAATAAGAATTAAAAGTTGATCAAGGGCATA 371
                         *   *   * **                   *           *  *   *  **  

consensus_7157#0      CAGTTTCAAACGTTCCCATGCTTTATTCATTTGAATAATTTTATCTCGGATATCTGGTGT 403
consensus_7157#1      ATCTGGTAAAC-CACCCATAATGCGTGCACCTGGTGG----------GGGCATCCGAC-T 441
consensus_7157#2      CTATTGATAAT----CTTTAAATTTTCAGCCTGAAACGTTTT-----ACACATACAGAAA 422
                         *    **     *  *      *     **                  **       

consensus_7157#0      TTTTAAATCTGAAGTCTGTGATTTTCTTTTGACATCTTTATTAGTATCTATTCCAGAGGA 463
consensus_7157#1      TTTTAACTGTCGAGTGCGACGTATAAGTTGA----------------------------- 472
consensus_7157#2      CTTCAATGGCTGAATTCATGAGTTGATTT------------------------------- 451
                       ** **      * *        *   **                               

consensus_7157#0      TTTGTCGATTTTCTTGCAATCAGCACGTTCTAATTTTCTTGCTTGTTCTTCTATTCTTAC 523
consensus_7157#1      ------------------------------------------------------------
consensus_7157#2      ------------------------------------------------------------
                                                                                  

consensus_7157#0      AACAGCTAACTGATGACTGTTGATATTGTGATGAATTATTTTAATGCGTGCTAAATCAGC 583
consensus_7157#1      ------------------------------------------------------------
consensus_7157#2      ------------------------------------------------------------
                                                                                  

consensus_7157#0      TTCTAATCCTCGAATATTTGCCCGACGTATAGGTATTTGATCTACAGCTGTTTGCATTTG 643
consensus_7157#1      ------------------------------------------------------------
consensus_7157#2      ------------------------------------------------------------
                                                                                  

consensus_7157#0      ATCAATCCATTTAATTAATCCATCAATAGCACTTTCAAATTCACCTAAACCAAGTAAAAC 703
consensus_7157#1      ------------------------------------------------------------
consensus_7157#2      ------------------------------------------------------------
                                                                                  

consensus_7157#0      AGTTTGTAAACGATGACGTCTACTATTGCCGGAATCTAATAAATTGTCCCATCGTCGATT 763
consensus_7157#1      ------------------------------------------------------------
consensus_7157#2      ------------------------------------------------------------
                                                                                  

consensus_7157#0      AGCTACAGTTAGATCAGATTGTAATGATGTAGTATTTTGTACTGGGACTGTTCCG 818
consensus_7157#1      -------------------------------------------------------
consensus_7157#2      -------------------------------------------------------