These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7173#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 377 fasta sequence [CAATTATATTTAAACATACGAAGATAATCAGTCAACATTTATCTAAGTAATCACAGGATTTCAGAACATCTCCATATAACTCTCCAGCAAAACTGCCATTCTCAATCTAATTTCAGTTTATTTCACTTCACGTTTCTTTATATTATCATCACCCATATCCTGTTCTTCAGCGTGACTCATCATATGCATATGGCTCACCAACAGGCTCATAACTGTCTGGGAGCATTTTCACCCCATCCTAGGTTACGGAATATGAGGGTGTTCATAAGGGGGGCCGGCTACCAATTCGCCCAATAAGGGAGCCGTATTCAAAATCAGTGCCGTCTTTTTAAACTCGGAGCGGGCAAACCGTGCTGTACCACTTATCGCCTGTGAGT] [+] EMBL AI764933 [CAATTATATTTAAACATACGAAGATAATCAGTCAACATTTATCTAAGTAATCACAGGATTTCAGAACATCTCCATATAACTCTCCAGCAAAACTGCCATTCTCAATCTAATTTCAGTTTATTTCACTTCACGTTTCTTTATATTATCATCACCCATATCCTGTTCTTCAGCGTGACTCATCATATGCATATGGCTCACCAACAGGCTCATAACTGTCTGGGAGCATTTTCACCCCATCCTAGGTTACGGAATATGAGGGTGTTCATAAGGGGGGCCGGCTACCAATTCGCCCAATAAGGGAGCCGTATTCAAAATCAGTGCCGTCTTTTTAAACTCGGAGCGGGCAAACCGTGCTGTACCACTTATCGCCTGTGAGT] [+] EMBL AI820484 [CAATTATATTTAAACATACGAAGATAAACAGTCAACATTTATCTAAGTAATCACAGGATTTCAGAACATCTCCATATAACTCTCCAGCAAAACTGCCATTCTCAATCTAATTTCAGTTTATTTCACTTCACGTTTCCTTAAATTAACACCACCCATATCCTGGTCTTCActcgt ] consensusID : consensus_7173#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 234 fasta sequence [ACTGCCATTCTCAATCTAATTTCAGTTTATTCCACTTCACGTTTCTTATATTATCATCACCCATATCCTGTTCTTCAGCGTACTCATCATATGCATATGGCTCACCAACAGGCTCATAACTGTCTGGTACATTTTCACCCCATCCTATGTTATCGTAATATTGAGGTGGTTCATAAACTAGGTGTTGTTCAGGATATCCATACTGTTGATGACCTTGTGGTGGAAAGTGAGCTT] [-] EMBL AI740303 [ACTGCCATTCTCAATCTAATTTCAGTTTATTCCACTTCACGTTTCTTATATTATCATCACCCATATCCTGTTCTTCAGCGTACTCATCATATGCATATGGCTCACCAACAGGCTCATAACTGTCTGGTACATTTTCACCCCATCCTATGTTATCGTAATATTGAGGTGGTTCATAAACTAGGTGTTGTTCAGGATATCCATACTGTTGATGACCTTGTGGTGGAAAGTGAGCTT] consensusID : consensus_7173#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 146 fasta sequence [GTCTCGAGTTTGGGTGGGGGGGGGGGGGGAGCTATTCAGTTATGTGGGAAGGTACGAAGATAAACAGTCAACATTTATCTAAGTAATCACAGGATTTCAGAACATCTCCATATAACTCTCCAGCAAAACTGCCATTCTCAATCTAA] [+] EMBL AI820431 [GTCTCGAGTTTGGGTGGGGGGGGGGGGGGAGCTATTCAGTTATGTGGGAAGGTACGAAGATAAACAGTCAACATTTATCTAAGTAATCACAGGATTTCAGAACATCTCCATATAACTCTCCAGCAAAACTGCCATTCTCAATCTAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7173#0 CAATTATATTTAAACATACGAAGATAATCAGTCAACATTTATCTAAGTAATCACAGGATT 60 consensus_7173#1 ------------------------------------------------------------ consensus_7173#2 ------------------------------------------------------------ consensus_7173#0 TCAGAACATCTCCATATAACTCTCCAGCAAAACTGCCATTCTCAATCTAATTTCAGTTTA 120 consensus_7173#1 -------------------------------ACTGCCATTCTCAATCTAATTTCAGTTTA 29 consensus_7173#2 -------------------------------GTCTCGAGTTTGGGTGGGGGGGGGGGGGG 29 * * * * * * consensus_7173#0 TTTCACTTCACGTTTCTTTATATTATCATCACCCATATCCTGTTCTTCAGCGTGACTCAT 180 consensus_7173#1 TTCCACTTCACGTTTCTT-ATATTATCATCACCCATATCCTGTTCTTCAGCGT-ACTCAT 87 consensus_7173#2 AGCTATTCAGTTATGTGGGAAGGTACGAAGATAAACAGTCAACATTT--ATCTAAGTAAT 87 * * * * ** * * * * * ** * * * ** consensus_7173#0 CATATGCATATGGCTCACCAACAGGCTCATAACTGTCTGGGAGCATTTTCACCC-CATCC 239 consensus_7173#1 CATATGCATATGGCTCACCAACAGGCTCATAACTGTCTGGTA-CATTTTCACCC-CATCC 145 consensus_7173#2 CACAGGATTTCAGAACATCTCCA----TATAACTCTCCAGCAAAACTGCCATTCTCAATC 143 ** * * * * ** * ** ****** ** * * * * ** * ** * consensus_7173#0 TAGGTTA-CGGAATATGAGGGTG-TTCATAAGGGGGGCCGGCTACCAATTCGCCCAATAA 297 consensus_7173#1 TATGTTATCGTAATATTGAGGTGGTTCATAAACTAGGT--GTTGTTCAGGATATCCATAC 203 consensus_7173#2 TAA--------------------------------------------------------- 146 ** consensus_7173#0 GGGAGCCGTATTCAAAATCAGTGCCGTCTTTTTAAACTCGGAGCGGGCAAACCGTGCTGT 357 consensus_7173#1 TGTTGATGACCTTGTGGTGGAAAGTGAGCTT----------------------------- 234 consensus_7173#2 ------------------------------------------------------------ consensus_7173#0 ACCACTTATCGCCTGTGAGT 377 consensus_7173#1 -------------------- consensus_7173#2 -------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||