cluster # 7173

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Schistosoma mansoni
cluster # 7173 cluster # 7173 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7173#0 length = 377 sequences # 2

consensus_7173#1 length = 234 sequences # 1
consensus_7173#2 length = 146 sequences # 1

consensusID : consensus_7173#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 377
fasta sequence

                              [CAATTATATTTAAACATACGAAGATAATCAGTCAACATTTATCTAAGTAATCACAGGATTTCAGAACATCTCCATATAACTCTCCAGCAAAACTGCCATTCTCAATCTAATTTCAGTTTATTTCACTTCACGTTTCTTTATATTATCATCACCCATATCCTGTTCTTCAGCGTGACTCATCATATGCATATGGCTCACCAACAGGCTCATAACTGTCTGGGAGCATTTTCACCCCATCCTAGGTTACGGAATATGAGGGTGTTCATAAGGGGGGCCGGCTACCAATTCGCCCAATAAGGGAGCCGTATTCAAAATCAGTGCCGTCTTTTTAAACTCGGAGCGGGCAAACCGTGCTGTACCACTTATCGCCTGTGAGT]

[+] EMBL AI764933             [CAATTATATTTAAACATACGAAGATAATCAGTCAACATTTATCTAAGTAATCACAGGATTTCAGAACATCTCCATATAACTCTCCAGCAAAACTGCCATTCTCAATCTAATTTCAGTTTATTTCACTTCACGTTTCTTTATATTATCATCACCCATATCCTGTTCTTCAGCGTGACTCATCATATGCATATGGCTCACCAACAGGCTCATAACTGTCTGGGAGCATTTTCACCCCATCCTAGGTTACGGAATATGAGGGTGTTCATAAGGGGGGCCGGCTACCAATTCGCCCAATAAGGGAGCCGTATTCAAAATCAGTGCCGTCTTTTTAAACTCGGAGCGGGCAAACCGTGCTGTACCACTTATCGCCTGTGAGT]
[+] EMBL AI820484             [CAATTATATTTAAACATACGAAGATAAACAGTCAACATTTATCTAAGTAATCACAGGATTTCAGAACATCTCCATATAACTCTCCAGCAAAACTGCCATTCTCAATCTAATTTCAGTTTATTTCACTTCACGTTTCCTTAAATTAACACCACCCATATCCTGGTCTTCActcgt                                                                                                                                                                                                           ]




>consensus_7173#0
CAATTATATTTAAACATACGAAGATAATCAGTCAACATTTATCTAAGTAATCACAGGATT
TCAGAACATCTCCATATAACTCTCCAGCAAAACTGCCATTCTCAATCTAATTTCAGTTTA
TTTCACTTCACGTTTCTTTATATTATCATCACCCATATCCTGTTCTTCAGCGTGACTCAT
CATATGCATATGGCTCACCAACAGGCTCATAACTGTCTGGGAGCATTTTCACCCCATCCT
AGGTTACGGAATATGAGGGTGTTCATAAGGGGGGCCGGCTACCAATTCGCCCAATAAGGG
AGCCGTATTCAAAATCAGTGCCGTCTTTTTAAACTCGGAGCGGGCAAACCGTGCTGTACC
ACTTATCGCCTGTGAGT

consensusID : consensus_7173#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 234
fasta sequence

                              [ACTGCCATTCTCAATCTAATTTCAGTTTATTCCACTTCACGTTTCTTATATTATCATCACCCATATCCTGTTCTTCAGCGTACTCATCATATGCATATGGCTCACCAACAGGCTCATAACTGTCTGGTACATTTTCACCCCATCCTATGTTATCGTAATATTGAGGTGGTTCATAAACTAGGTGTTGTTCAGGATATCCATACTGTTGATGACCTTGTGGTGGAAAGTGAGCTT]

[-] EMBL AI740303             [ACTGCCATTCTCAATCTAATTTCAGTTTATTCCACTTCACGTTTCTTATATTATCATCACCCATATCCTGTTCTTCAGCGTACTCATCATATGCATATGGCTCACCAACAGGCTCATAACTGTCTGGTACATTTTCACCCCATCCTATGTTATCGTAATATTGAGGTGGTTCATAAACTAGGTGTTGTTCAGGATATCCATACTGTTGATGACCTTGTGGTGGAAAGTGAGCTT]




>consensus_7173#1
ACTGCCATTCTCAATCTAATTTCAGTTTATTCCACTTCACGTTTCTTATATTATCATCAC
CCATATCCTGTTCTTCAGCGTACTCATCATATGCATATGGCTCACCAACAGGCTCATAAC
TGTCTGGTACATTTTCACCCCATCCTATGTTATCGTAATATTGAGGTGGTTCATAAACTA
GGTGTTGTTCAGGATATCCATACTGTTGATGACCTTGTGGTGGAAAGTGAGCTT

consensusID : consensus_7173#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 146
fasta sequence

                              [GTCTCGAGTTTGGGTGGGGGGGGGGGGGGAGCTATTCAGTTATGTGGGAAGGTACGAAGATAAACAGTCAACATTTATCTAAGTAATCACAGGATTTCAGAACATCTCCATATAACTCTCCAGCAAAACTGCCATTCTCAATCTAA]

[+] EMBL AI820431             [GTCTCGAGTTTGGGTGGGGGGGGGGGGGGAGCTATTCAGTTATGTGGGAAGGTACGAAGATAAACAGTCAACATTTATCTAAGTAATCACAGGATTTCAGAACATCTCCATATAACTCTCCAGCAAAACTGCCATTCTCAATCTAA]




>consensus_7173#2
GTCTCGAGTTTGGGTGGGGGGGGGGGGGGAGCTATTCAGTTATGTGGGAAGGTACGAAGA
TAAACAGTCAACATTTATCTAAGTAATCACAGGATTTCAGAACATCTCCATATAACTCTC
CAGCAAAACTGCCATTCTCAATCTAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7173#0      CAATTATATTTAAACATACGAAGATAATCAGTCAACATTTATCTAAGTAATCACAGGATT 60
consensus_7173#1      ------------------------------------------------------------
consensus_7173#2      ------------------------------------------------------------
                                                                                  

consensus_7173#0      TCAGAACATCTCCATATAACTCTCCAGCAAAACTGCCATTCTCAATCTAATTTCAGTTTA 120
consensus_7173#1      -------------------------------ACTGCCATTCTCAATCTAATTTCAGTTTA 29
consensus_7173#2      -------------------------------GTCTCGAGTTTGGGTGGGGGGGGGGGGGG 29
                                                         * * * *   *         *    

consensus_7173#0      TTTCACTTCACGTTTCTTTATATTATCATCACCCATATCCTGTTCTTCAGCGTGACTCAT 180
consensus_7173#1      TTCCACTTCACGTTTCTT-ATATTATCATCACCCATATCCTGTTCTTCAGCGT-ACTCAT 87
consensus_7173#2      AGCTATTCAGTTATGTGGGAAGGTACGAAGATAAACAGTCAACATTT--ATCTAAGTAAT 87
                          * *      *     *   **  *  *   * *  *     **     * * * **

consensus_7173#0      CATATGCATATGGCTCACCAACAGGCTCATAACTGTCTGGGAGCATTTTCACCC-CATCC 239
consensus_7173#1      CATATGCATATGGCTCACCAACAGGCTCATAACTGTCTGGTA-CATTTTCACCC-CATCC 145
consensus_7173#2      CACAGGATTTCAGAACATCTCCA----TATAACTCTCCAGCAAAACTGCCATTCTCAATC 143
                      ** * *  *   *  ** *  **     ****** **  * *  * *  **  * **  *

consensus_7173#0      TAGGTTA-CGGAATATGAGGGTG-TTCATAAGGGGGGCCGGCTACCAATTCGCCCAATAA 297
consensus_7173#1      TATGTTATCGTAATATTGAGGTGGTTCATAAACTAGGT--GTTGTTCAGGATATCCATAC 203
consensus_7173#2      TAA--------------------------------------------------------- 146
                      **                                                          

consensus_7173#0      GGGAGCCGTATTCAAAATCAGTGCCGTCTTTTTAAACTCGGAGCGGGCAAACCGTGCTGT 357
consensus_7173#1      TGTTGATGACCTTGTGGTGGAAAGTGAGCTT----------------------------- 234
consensus_7173#2      ------------------------------------------------------------
                                                                                  

consensus_7173#0      ACCACTTATCGCCTGTGAGT 377
consensus_7173#1      --------------------
consensus_7173#2      --------------------