cluster # 7174

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Schistosoma mansoni
cluster # 7174 cluster # 7174 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7174#0 length = 512 sequences # 3

consensus_7174#1 length = 156 sequences # 1

consensusID : consensus_7174#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 512
fasta sequence

                              [GGAATTTGCACGCTGTCGGAAGTAATCGGGTGCCGCGACGATATTATGGTGTATTTAATTTACCGCGGCCTCGAACCGTCGTTAGCGTTTAAGATTATGGAATCCGTCCGCAAAGGAAAAGGACTAACGCCAGAATTTGAAGAAGAAATGCGCAAACACGACGTACCAGAATGGTACATCGAATCAAGCAAAAAAATTAAGTATATGTTCCCTAAGGGTGCGACACGTTGCTAGTTTAATCCCAGTAGAAATGCTGGATAAAGGCTAGCCCGTGCAGAAGACAAATCTGCATGAGAACTACATGAGACGAGGCGGAGGTGTGAAATTCCCTCCCACCGTAGCAGGGTACGGTGAAACCCCCTAAGCACCGCGACTTGCAGGGATTGTCTCCTAACATGAACTGTAAGAGAGCTCGCTAAGGTCGTCTTGAAAGCGTGACACGTAGACGTGAGTAAAGGCGGGGGTCCCAAAAAAGCAACTATGGTGAGGCGACGAATCCTCGTTTGGAAAGG]

[+] EMBL CD123741             [GGAATTTGCACGCTGTCGGAAGTAATCGGGTGCCGCGACGATATTATGGTGTATTTAATTTACCGCGGCCTCGAACCGTCGTTAGCGTTTAAGATTATGGAATCCGTCCGCAAAGGAAAAGGACTAACGCCAGAATTTGAAGAAGAAATGCGCAAACACGACGTACCAGAATGGTACATCGAATCAAGCAAAAAAATTAAGTATATGTTCCCTAAGGGTGCGACACGTTGCTAGTTTAATCCCAGTAGAAATGCTGGATAAAGGCTAGCCCGTGCAGAAGACAAATCTGCATGAGAACTACATGAGACGAGGCGGAGGTGTGAAATTCCCTCCCACCGTAGCAGGGTACGGTGAAACCCCCTAAGCACCGCGACTTGCAGGGATTGTCTCCTAACATGAACTGTAAGAGAGCTCGCTAAGGTCGTCTTGAAAGCGTGACACGTAGACGTGAGTAAAGGCGGGGGTCCCAAAAAAGCAACTATGGTGAGGCGACGAATCCTCGTTTGGAAAGG]
[+] EMBL CD123686             [GGAATTTGCACGCTGTCGGAAGTAATCGGGTGCCGCGACGATATTATGGTGTATTTAATTTACCGCGGCCTCGAACCGTCGTTAGCGTTTAAGATTATGGAATCCGTCCGCAAAGGAAAAGGACTAACGCCAGAATTTGAAGAAGAAATGCGCAAACACGACGTACCAGAATGGTACATCGAATCAAGC AAAAAATTAAGTATATGTTCCCTAAGGGTGCGACACGTTGCTAGTTTAATCCCAGTAGAAATGCTGGATAAAGGCTAGCCCGCGCAGAAGACAAATCTGCATGAGAACTACATGAGACGAGGCGGAGGTGTGAAATTCCCTCCCACCGTAGCAGGGTACGGTGAAACCCCCTAAGCACCGCGACTTGCAGGGATTGTCTCCTAACATGAACTGTAAGAGAGCTCGCTAAGGTCGTCTTGAAAGCGTGACACGTAGACGTGAGTAAAGGCGGGGGTCCCAAAAAAGCAACTATGGTGAGGCGACGAATCCTCGTTTGGAAAGG]
[-] EMBL CD124103             [                                                                                                                                                                                                                                                                                                                              TGTGAAATTCCCTCCCACCGTAGCAGGGTACGGTGAAACCCCCTGAGCACCGCGACTTGCAGGGATTGTCTCCTAACATGAACTGTAAGAGAGCTCGCTAAGGTCGTCTTGAAAGCGTGACACGTAGACGTGAGTAAAGGCGGGGGTCCCAAAAAAGCAACTATGGAGAGGCGACGAATCCTCGT         ]




>consensus_7174#0
GGAATTTGCACGCTGTCGGAAGTAATCGGGTGCCGCGACGATATTATGGTGTATTTAATT
TACCGCGGCCTCGAACCGTCGTTAGCGTTTAAGATTATGGAATCCGTCCGCAAAGGAAAA
GGACTAACGCCAGAATTTGAAGAAGAAATGCGCAAACACGACGTACCAGAATGGTACATC
GAATCAAGCAAAAAAATTAAGTATATGTTCCCTAAGGGTGCGACACGTTGCTAGTTTAAT
CCCAGTAGAAATGCTGGATAAAGGCTAGCCCGTGCAGAAGACAAATCTGCATGAGAACTA
CATGAGACGAGGCGGAGGTGTGAAATTCCCTCCCACCGTAGCAGGGTACGGTGAAACCCC
CTAAGCACCGCGACTTGCAGGGATTGTCTCCTAACATGAACTGTAAGAGAGCTCGCTAAG
GTCGTCTTGAAAGCGTGACACGTAGACGTGAGTAAAGGCGGGGGTCCCAAAAAAGCAACT
ATGGTGAGGCGACGAATCCTCGTTTGGAAAGG

consensusID : consensus_7174#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 156
fasta sequence

                              [GACGTACCCAATGTAAGAGAGCTCGCTAAAGTCGTCTTGAAAGCGTGACACGTAGACGTGAGTAAAGGCGGGGGTCCCAAAAAACAACTATGGTGAGGCGACGAATCCTCGTTTGGAAAGGCTCGTAAGGACAACTCAGTCGGTAGGCTGAGGCTA]

[+] EMBL CD123901             [GACGTACCCAATGTAAGAGAGCTCGCTAAAGTCGTCTTGAAAGCGTGACACGTAGACGTGAGTAAAGGCGGGGGTCCCAAAAAACAACTATGGTGAGGCGACGAATCCTCGTTTGGAAAGGCTCGTAAGGACAACTCAGTCGGTAGGCTGAGGCTA]




>consensus_7174#1
GACGTACCCAATGTAAGAGAGCTCGCTAAAGTCGTCTTGAAAGCGTGACACGTAGACGTG
AGTAAAGGCGGGGGTCCCAAAAAACAACTATGGTGAGGCGACGAATCCTCGTTTGGAAAG
GCTCGTAAGGACAACTCAGTCGGTAGGCTGAGGCTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7174#0      GGAATTTGCACGCTGTCGGAAGTAATCGGGTGCCGCGACGATATTATGGTGTATTTAATT 60
consensus_7174#1      ------------------------------------------------------------
                                                                                  

consensus_7174#0      TACCGCGGCCTCGAACCGTCGTTAGCGTTTAAGATTATGGAATCCGTCCGCAAAGGAAAA 120
consensus_7174#1      ------------------------------------------------------------
                                                                                  

consensus_7174#0      GGACTAACGCCAGAATTTGAAGAAGAAATGCGCAAACACGACGTACCAGAATGGTACATC 180
consensus_7174#1      ------------------------------------------------------------
                                                                                  

consensus_7174#0      GAATCAAGCAAAAAAATTAAGTATATGTTCCCTAAGGGTGCGACACGTTGCTAGTTTAAT 240
consensus_7174#1      ------------------------------------------------------------
                                                                                  

consensus_7174#0      CCCAGTAGAAATGCTGGATAAAGGCTAGCCCGTGCAGAAGACAAATCTGCATGAGAACTA 300
consensus_7174#1      ------------------------------------------------------------
                                                                                  

consensus_7174#0      CATGAGACGAGGCGGAGGTGTGAAATTCCCTCCCACCGTAGCAGGGTACGGTGAAACCCC 360
consensus_7174#1      ------------------------------------------------------------
                                                                                  

consensus_7174#0      CTAAGCACCGCGACTTGCAGGGATTGTCTCCTAACATGAACTGTAAGAGAGCTCGCTAAG 420
consensus_7174#1      ------------------------------GACGTACCCAATGTAAGAGAGCTCGCTAAA 30
                                                         *   * ****************** 

consensus_7174#0      GTCGTCTTGAAAGCGTGACACGTAGACGTGAGTAAAGGCGGGGGTCCCAAAAAAGCAACT 480
consensus_7174#1      GTCGTCTTGAAAGCGTGACACGTAGACGTGAGTAAAGGCGGGGGTCCCAAAAAA-CAACT 89
                      ****************************************************** *****

consensus_7174#0      ATGGTGAGGCGACGAATCCTCGTTTGGAAAGG---------------------------- 512
consensus_7174#1      ATGGTGAGGCGACGAATCCTCGTTTGGAAAGGCTCGTAAGGACAACTCAGTCGGTAGGCT 149
                      ********************************                            

consensus_7174#0      -------
consensus_7174#1      GAGGCTA 156