cluster # 7184

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Schistosoma mansoni
cluster # 7184 cluster # 7184 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7184#0 length = 650 sequences # 3

consensus_7184#1 length = 581 sequences # 1
consensus_7184#2 length = 248 sequences # 1

consensusID : consensus_7184#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 650
fasta sequence

                              [ACGTTCTTACTTAATTCGTGACAACTTTATCTCGTCTATTGTGAATTTTAACACTGAGGATATTACTGATAGCATCAGAGAAGCAATGAAAAAGAAGTATATCAGCAATCCTGATTATAATTTTGAGAAGGTTAACCGAGCCAGTAGTGCTTGTGGACCAATGGTGAAATGGGCTATAGCTCAGATAAACTATGCGGATATATTGAAGAAAGTTGAACCACTTCGAAATGAATTGAAAACATTAGAGGCTGCTGCAACTACAAATAAAGAGGAGGCGAAAAATAATGAAGTTACAGTTGCAGCATTAGAGAAAAGCATTGCTAAGTACAAAGAAGAATATGCAGTTCTAATCAGTCAAGCTCAAGCGATTAAATCAGATTTGGCTACTGTGGAAGCAAAGGTTGCACGTTCTGTTGCATTGATTAAGTCATTGAGTAACGAACGAGCTCGTTGGGAAAGTAGTTCTGAAACTTTTAAATCTCAAATGTCCACTATATTTGGTGACTGTTTACTTTCTGCAGCATTTATGGCTTATGCTGGCTATTTTGATCAACATTTTCGTTCACGCTCATTTGCCACGTGGTGTCAGCATTTACAATCTGTTGGTATCCATTTCCGTAATGATCTGGCTTTAGTAGAGTACCCATGGC]

[+] EMBL CD096254             [ACGTTCTTACTTAATTCGTGACAACTTTATCTCGTCTATTGTGAATTTTAACACTGAGGATATTACTGATAGCATCAGAGAAGCAATGAAAAAGAAGTATATCAGCAATCCTGATTATAATTTTGAGAAGGTTAACCGAGCCAGTAGTGCTTGTGGACCAATGGTGAAATGGGCTATAGCTCAGATAAACTATGCGGATATATTGAAGAAAGTTGAACCACTTCGAAATGAATTGAAAACATTAGAGGCTGCTGCAACTACAAATAAAGAGGAGGCGAAAAATAATGAAGTTACAGTTGCAGCATTAGAGAAAAGCATTGCTAAGTACAAAGAAGAATATGCAGTTCTAATCAGTCAAGCTCAAGCGATTAAATCAGATTTGGCTACTGTGGAAGCAAAGGTTGCACGTTCTGTTGCATTGATTAAGTCATTGAGTAACGAACGAGCTCGTTGGGAAAGTAGTTCTGAAACTTTTAAATCTCACATGTCCACTATATTTGGCGACTGTTTACTTTCTGCAGCATTTATGGCTCATGCTGGCTATTTTGATCAACATTCTCGTTCACGCTCATTTGCCACGTGGTGTCAGCA                                                           ]
[-] EMBL CD201050             [                                                                                                GTATATCAGCAATCCTGATTATAA TTTGAGANAGTTAACCGAGCCAGTAGTGCTTGTGGACCAATGGTGAAATGGGCTATAGCTCAGATAAACTATGCGGATATATTGAAGAAAGTTGAACCACTTCGAAATGAATTGAAAACATTAGAGGCTGCTGCAACTACAAATAAAGAGGAGGCGAAAAATAATGAAGTTACAATTGCAGCATTAGAGAAAAGCATTGCTAAGTACAAAGAAGAATATGCAGTTCTAATCAGTCAAGCTCAAGCGATTAAATCAGATTTGGCTACTGTGGAAGCAAAGGTTGCACGTTCTGTTGCATTGATTAAGTCATTGAGTAACGAACGAGCTCGTTGGGAAAGTAGTTCTGAAACTTTTAAATCTCAAATGTCCACTATATTTGGTGACTGTTTACTTTCTGCAGCATTTATGGCTTATGCTGGCTATTTTGATCAACATTTTCGTTC                                                                                      ]
[-] EMBL CD168958             [                                                                                                                                                                                                                                                                                                                                     TACAAAGAAGAATATGCAGTTCTAATCAGTCAAGCTCAAGCGATTAAATCAGATTTGGCTACTGTGGAAGCAAAGGTTGCACGTTCTGTTGCATTGATTAAGTCATTGAGTAACGAACGAGCTCGTTGGGAAAGTAGTTCTGAAACTTTTAAATCTCTAATGTCCACTATATTTGGTGACTGTTTACTTTCTGCAGCATTTATGGCTTATGCTGGCTATTTTGATCAACATTTTCGTTCACGCTTATTTGCCACGTGGTGTCAGCATTTACAATCTGTTGGTATCCATTTCCGTAATGATCTGGCTTTAGTAGAGTACCCATGGC]




>consensus_7184#0
ACGTTCTTACTTAATTCGTGACAACTTTATCTCGTCTATTGTGAATTTTAACACTGAGGA
TATTACTGATAGCATCAGAGAAGCAATGAAAAAGAAGTATATCAGCAATCCTGATTATAA
TTTTGAGAAGGTTAACCGAGCCAGTAGTGCTTGTGGACCAATGGTGAAATGGGCTATAGC
TCAGATAAACTATGCGGATATATTGAAGAAAGTTGAACCACTTCGAAATGAATTGAAAAC
ATTAGAGGCTGCTGCAACTACAAATAAAGAGGAGGCGAAAAATAATGAAGTTACAGTTGC
AGCATTAGAGAAAAGCATTGCTAAGTACAAAGAAGAATATGCAGTTCTAATCAGTCAAGC
TCAAGCGATTAAATCAGATTTGGCTACTGTGGAAGCAAAGGTTGCACGTTCTGTTGCATT
GATTAAGTCATTGAGTAACGAACGAGCTCGTTGGGAAAGTAGTTCTGAAACTTTTAAATC
TCAAATGTCCACTATATTTGGTGACTGTTTACTTTCTGCAGCATTTATGGCTTATGCTGG
CTATTTTGATCAACATTTTCGTTCACGCTCATTTGCCACGTGGTGTCAGCATTTACAATC
TGTTGGTATCCATTTCCGTAATGATCTGGCTTTAGTAGAGTACCCATGGC

consensusID : consensus_7184#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 581
fasta sequence

                              [AGTGGAATCTATTTGCTTATTGCTGGGCGAAGCATCCACTGATTGGAATCAAATTTTGAAAATTCTTGTAAAAGATTCATTCGTTCCCAGCATTATCAATTTTAACACTGATGATGTAACTGATAGCATCAGAGAAACAATGAAAAAGAAGTATATCAGCAATCCTGATTATAATTTTGAGAAAGTTAACCGAGCCAGTAGTGCTTGTGGACCAATGGTGAAATGGGCTATAGCTCAGATAAACTATGCGGATATATTGAAGAAAGTTGAACCACTTCGAAATGAATTGAAAACATTAGAGGCTGCTGCAACTACAAATAAAGAGGAGGCGAAAAATAATGAAGTTACAATTGCAGCATTAGAGAAAAGCATTGCTAAGTACAAAGAAGAATATGCAGTTCTAATCAGTCAAGCTCAAGCGATTAAATCAGATTTGGCTACTGTGGAAGCAAAGGTTGCACGTTCTGTTGCATTGATTAAGTCATTGAGTAACGAACGAGCTCGTTGGGAAAGTAGTTCTGAAACTTTTAAATCTCANATGTCCACTATATTTGGTGACTGTTTACTTTCTGCAGCATTTA]

[+] EMBL CD115308             [AGTGGAATCTATTTGCTTATTGCTGGGCGAAGCATCCACTGATTGGAATCAAATTTTGAAAATTCTTGTAAAAGATTCATTCGTTCCCAGCATTATCAATTTTAACACTGATGATGTAACTGATAGCATCAGAGAAACAATGAAAAAGAAGTATATCAGCAATCCTGATTATAATTTTGAGAAAGTTAACCGAGCCAGTAGTGCTTGTGGACCAATGGTGAAATGGGCTATAGCTCAGATAAACTATGCGGATATATTGAAGAAAGTTGAACCACTTCGAAATGAATTGAAAACATTAGAGGCTGCTGCAACTACAAATAAAGAGGAGGCGAAAAATAATGAAGTTACAATTGCAGCATTAGAGAAAAGCATTGCTAAGTACAAAGAAGAATATGCAGTTCTAATCAGTCAAGCTCAAGCGATTAAATCAGATTTGGCTACTGTGGAAGCAAAGGTTGCACGTTCTGTTGCATTGATTAAGTCATTGAGTAACGAACGAGCTCGTTGGGAAAGTAGTTCTGAAACTTTTAAATCTCANATGTCCACTATATTTGGTGACTGTTTACTTTCTGCAGCATTTA]




>consensus_7184#1
AGTGGAATCTATTTGCTTATTGCTGGGCGAAGCATCCACTGATTGGAATCAAATTTTGAA
AATTCTTGTAAAAGATTCATTCGTTCCCAGCATTATCAATTTTAACACTGATGATGTAAC
TGATAGCATCAGAGAAACAATGAAAAAGAAGTATATCAGCAATCCTGATTATAATTTTGA
GAAAGTTAACCGAGCCAGTAGTGCTTGTGGACCAATGGTGAAATGGGCTATAGCTCAGAT
AAACTATGCGGATATATTGAAGAAAGTTGAACCACTTCGAAATGAATTGAAAACATTAGA
GGCTGCTGCAACTACAAATAAAGAGGAGGCGAAAAATAATGAAGTTACAATTGCAGCATT
AGAGAAAAGCATTGCTAAGTACAAAGAAGAATATGCAGTTCTAATCAGTCAAGCTCAAGC
GATTAAATCAGATTTGGCTACTGTGGAAGCAAAGGTTGCACGTTCTGTTGCATTGATTAA
GTCATTGAGTAACGAACGAGCTCGTTGGGAAAGTAGTTCTGAAACTTTTAAATCTCANAT
GTCCACTATATTTGGTGACTGTTTACTTTCTGCAGCATTTA

consensusID : consensus_7184#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 248
fasta sequence

                              [GCTTCGCCCAGCAATAAGCAAATAGATTCCACTGCCATTTTGACAACGGGAGGAGGATTTTTCATAGCTCTTATCTCTTGGATATCTCTTTTGCGTATTCCCTCGACAGCTTGTTTAGCTTCTGCAACAGCCGGTTCAACTTGACTAAGTTCATTCATAACTAAAGTACGTTTTTCATTAATGTATAATTCTTGATTAGCCAATTCTTCTTGTAATCTTTGACTCATAGTTTTCTTTTTCTCTGCTTT]

[+] EMBL CD139656             [GCTTCGCCCAGCAATAAGCAAATAGATTCCACTGCCATTTTGACAACGGGAGGAGGATTTTTCATAGCTCTTATCTCTTGGATATCTCTTTTGCGTATTCCCTCGACAGCTTGTTTAGCTTCTGCAACAGCCGGTTCAACTTGACTAAGTTCATTCATAACTAAAGTACGTTTTTCATTAATGTATAATTCTTGATTAGCCAATTCTTCTTGTAATCTTTGACTCATAGTTTTCTTTTTCTCTGCTTT]




>consensus_7184#2
GCTTCGCCCAGCAATAAGCAAATAGATTCCACTGCCATTTTGACAACGGGAGGAGGATTT
TTCATAGCTCTTATCTCTTGGATATCTCTTTTGCGTATTCCCTCGACAGCTTGTTTAGCT
TCTGCAACAGCCGGTTCAACTTGACTAAGTTCATTCATAACTAAAGTACGTTTTTCATTA
ATGTATAATTCTTGATTAGCCAATTCTTCTTGTAATCTTTGACTCATAGTTTTCTTTTTC
TCTGCTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7184#0      --------------------------------------------------ACGTTCTTAC 10
consensus_7184#1      AGTGGAATCTATTTGCTTATTGCTGGGCGAAGCATCCACTGATTGGAATCAAATTTTGAA 60
consensus_7184#2      ------------------------------------------------------------
                                                                                  

consensus_7184#0      TTAATTCGTGACAACTTTATCTCGTCT----ATTGTGAATTTTAACACTGAGGATATTAC 66
consensus_7184#1      AATTCTTGTAAAAGATTCATTCGTTCCCAGCATTATCAATTTTAACACTGATGATGTAAC 120
consensus_7184#2      ------------------------------------------------------------
                                                                                  

consensus_7184#0      TGATAGCATCAGAGAAGCAATGAAAAAGAAGTATATCAGCAATCCTGATTATAATTTTGA 126
consensus_7184#1      TGATAGCATCAGAGAAACAATGAAAAAGAAGTATATCAGCAATCCTGATTATAATTTTGA 180
consensus_7184#2      ------------------------------------------------------------
                                                                                  

consensus_7184#0      GAAGGTTAACCGAGCCAGTAGTGCTTGTGGACCAATGGTGAAATGGGCTATAGCTCAGAT 186
consensus_7184#1      GAAAGTTAACCGAGCCAGTAGTGCTTGTGGACCAATGGTGAAATGGGCTATAGCTCAGAT 240
consensus_7184#2      ------------------------------------------------------------
                                                                                  

consensus_7184#0      AAACTATGCGGATATATTGAAGAAAGTTGAACCACTTCGAAATGAATTGAAAACATTAGA 246
consensus_7184#1      AAACTATGCGGATATATTGAAGAAAGTTGAACCACTTCGAAATGAATTGAAAACATTAGA 300
consensus_7184#2      ---------------------------------GCTTCGCCCAGCAATAAGCA-AATAGA 26
                                                        *****    * * * *  * * ****

consensus_7184#0      GGCTGCTGCAACTACAAATAAAGAGGAGGCGAAAAATAATGAAGTTACAGTTGCAGCATT 306
consensus_7184#1      GGCTGCTGCAACTACAAATAAAGAGGAGGCGAAAAATAATGAAGTTACAATTGCAGCATT 360
consensus_7184#2      TTCCACTGCCATTTTGA-CAACGGGAGGAGGATTTTTCAT--AGCTCTTATCTC----TT 79
                        *  **** * *   *  ** * *  *  **    * **  ** *    *  *    **

consensus_7184#0      AGAGAAAAGCATTGCTAAGTACAAAGA-AGAATATGCAGTTCTAATCAGTCAAGCTCAAG 365
consensus_7184#1      AGAGAAAAGCATTGCTAAGTACAAAGA-AGAATATGCAGTTCTAATCAGTCAAGCTCAAG 419
consensus_7184#2      GGATATCTCTTTTGCGTATTCCCTCGACAGCTTGTTTAGCTTCTGCAA--------CAGC 131
                       ** *      ****  * * *   ** **  * *  ** *      *        **  

consensus_7184#0      CGATTAAATCAGATTTGGCTACTGTGGAAGCAAAGGTTGCACGTTCTGTTGCATTGATTA 425
consensus_7184#1      CGATTAAATCAGATTTGGCTACTGTGGAAGCAAAGGTTGCACGTTCTGTTGCATTGATTA 479
consensus_7184#2      CGGTTCAACTTGACTAAGTTCATTCATAACTAAAG----TACGTTTTTCATTAATGTATA 187
                      ** ** **   ** *  * *  *    **  ****     ***** *     * **  **

consensus_7184#0      AGTCATTGAGTAACGAACGAGCTCGTTGGGAAAGTAGTTCTGAAACTTTTAAATCTCAAA 485
consensus_7184#1      AGTCATTGAGTAACGAACGAGCTCGTTGGGAAAGTAGTTCTGAAACTTTTAAATCTCANA 539
consensus_7184#2      ATTC-TTGATTAGCCAATT--CTTCTTGTAA-------TCTTTGACTCATAGTTTTCT-- 235
                      * ** **** ** * **    **  ***  *       ***   ***  **  * **   

consensus_7184#0      TGTCCACTATATTTGGTGACTGTTTACTTTCTGCAGCATTTATGGCTTATGCTGGCTATT 545
consensus_7184#1      TGTCCACTATATTTGGTGACTGTTTACTTTCTGCAGCATTTA------------------ 581
consensus_7184#2      TTTTCTCTGCTTT----------------------------------------------- 248
                      * * * **   **                                               

consensus_7184#0      TTGATCAACATTTTCGTTCACGCTCATTTGCCACGTGGTGTCAGCATTTACAATCTGTTG 605
consensus_7184#1      ------------------------------------------------------------
consensus_7184#2      ------------------------------------------------------------
                                                                                  

consensus_7184#0      GTATCCATTTCCGTAATGATCTGGCTTTAGTAGAGTACCCATGGC 650
consensus_7184#1      ---------------------------------------------
consensus_7184#2      ---------------------------------------------