These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7184#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 650 fasta sequence [ACGTTCTTACTTAATTCGTGACAACTTTATCTCGTCTATTGTGAATTTTAACACTGAGGATATTACTGATAGCATCAGAGAAGCAATGAAAAAGAAGTATATCAGCAATCCTGATTATAATTTTGAGAAGGTTAACCGAGCCAGTAGTGCTTGTGGACCAATGGTGAAATGGGCTATAGCTCAGATAAACTATGCGGATATATTGAAGAAAGTTGAACCACTTCGAAATGAATTGAAAACATTAGAGGCTGCTGCAACTACAAATAAAGAGGAGGCGAAAAATAATGAAGTTACAGTTGCAGCATTAGAGAAAAGCATTGCTAAGTACAAAGAAGAATATGCAGTTCTAATCAGTCAAGCTCAAGCGATTAAATCAGATTTGGCTACTGTGGAAGCAAAGGTTGCACGTTCTGTTGCATTGATTAAGTCATTGAGTAACGAACGAGCTCGTTGGGAAAGTAGTTCTGAAACTTTTAAATCTCAAATGTCCACTATATTTGGTGACTGTTTACTTTCTGCAGCATTTATGGCTTATGCTGGCTATTTTGATCAACATTTTCGTTCACGCTCATTTGCCACGTGGTGTCAGCATTTACAATCTGTTGGTATCCATTTCCGTAATGATCTGGCTTTAGTAGAGTACCCATGGC] [+] EMBL CD096254 [ACGTTCTTACTTAATTCGTGACAACTTTATCTCGTCTATTGTGAATTTTAACACTGAGGATATTACTGATAGCATCAGAGAAGCAATGAAAAAGAAGTATATCAGCAATCCTGATTATAATTTTGAGAAGGTTAACCGAGCCAGTAGTGCTTGTGGACCAATGGTGAAATGGGCTATAGCTCAGATAAACTATGCGGATATATTGAAGAAAGTTGAACCACTTCGAAATGAATTGAAAACATTAGAGGCTGCTGCAACTACAAATAAAGAGGAGGCGAAAAATAATGAAGTTACAGTTGCAGCATTAGAGAAAAGCATTGCTAAGTACAAAGAAGAATATGCAGTTCTAATCAGTCAAGCTCAAGCGATTAAATCAGATTTGGCTACTGTGGAAGCAAAGGTTGCACGTTCTGTTGCATTGATTAAGTCATTGAGTAACGAACGAGCTCGTTGGGAAAGTAGTTCTGAAACTTTTAAATCTCACATGTCCACTATATTTGGCGACTGTTTACTTTCTGCAGCATTTATGGCTCATGCTGGCTATTTTGATCAACATTCTCGTTCACGCTCATTTGCCACGTGGTGTCAGCA ] [-] EMBL CD201050 [ GTATATCAGCAATCCTGATTATAA TTTGAGANAGTTAACCGAGCCAGTAGTGCTTGTGGACCAATGGTGAAATGGGCTATAGCTCAGATAAACTATGCGGATATATTGAAGAAAGTTGAACCACTTCGAAATGAATTGAAAACATTAGAGGCTGCTGCAACTACAAATAAAGAGGAGGCGAAAAATAATGAAGTTACAATTGCAGCATTAGAGAAAAGCATTGCTAAGTACAAAGAAGAATATGCAGTTCTAATCAGTCAAGCTCAAGCGATTAAATCAGATTTGGCTACTGTGGAAGCAAAGGTTGCACGTTCTGTTGCATTGATTAAGTCATTGAGTAACGAACGAGCTCGTTGGGAAAGTAGTTCTGAAACTTTTAAATCTCAAATGTCCACTATATTTGGTGACTGTTTACTTTCTGCAGCATTTATGGCTTATGCTGGCTATTTTGATCAACATTTTCGTTC ] [-] EMBL CD168958 [ TACAAAGAAGAATATGCAGTTCTAATCAGTCAAGCTCAAGCGATTAAATCAGATTTGGCTACTGTGGAAGCAAAGGTTGCACGTTCTGTTGCATTGATTAAGTCATTGAGTAACGAACGAGCTCGTTGGGAAAGTAGTTCTGAAACTTTTAAATCTCTAATGTCCACTATATTTGGTGACTGTTTACTTTCTGCAGCATTTATGGCTTATGCTGGCTATTTTGATCAACATTTTCGTTCACGCTTATTTGCCACGTGGTGTCAGCATTTACAATCTGTTGGTATCCATTTCCGTAATGATCTGGCTTTAGTAGAGTACCCATGGC] consensusID : consensus_7184#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 581 fasta sequence [AGTGGAATCTATTTGCTTATTGCTGGGCGAAGCATCCACTGATTGGAATCAAATTTTGAAAATTCTTGTAAAAGATTCATTCGTTCCCAGCATTATCAATTTTAACACTGATGATGTAACTGATAGCATCAGAGAAACAATGAAAAAGAAGTATATCAGCAATCCTGATTATAATTTTGAGAAAGTTAACCGAGCCAGTAGTGCTTGTGGACCAATGGTGAAATGGGCTATAGCTCAGATAAACTATGCGGATATATTGAAGAAAGTTGAACCACTTCGAAATGAATTGAAAACATTAGAGGCTGCTGCAACTACAAATAAAGAGGAGGCGAAAAATAATGAAGTTACAATTGCAGCATTAGAGAAAAGCATTGCTAAGTACAAAGAAGAATATGCAGTTCTAATCAGTCAAGCTCAAGCGATTAAATCAGATTTGGCTACTGTGGAAGCAAAGGTTGCACGTTCTGTTGCATTGATTAAGTCATTGAGTAACGAACGAGCTCGTTGGGAAAGTAGTTCTGAAACTTTTAAATCTCANATGTCCACTATATTTGGTGACTGTTTACTTTCTGCAGCATTTA] [+] EMBL CD115308 [AGTGGAATCTATTTGCTTATTGCTGGGCGAAGCATCCACTGATTGGAATCAAATTTTGAAAATTCTTGTAAAAGATTCATTCGTTCCCAGCATTATCAATTTTAACACTGATGATGTAACTGATAGCATCAGAGAAACAATGAAAAAGAAGTATATCAGCAATCCTGATTATAATTTTGAGAAAGTTAACCGAGCCAGTAGTGCTTGTGGACCAATGGTGAAATGGGCTATAGCTCAGATAAACTATGCGGATATATTGAAGAAAGTTGAACCACTTCGAAATGAATTGAAAACATTAGAGGCTGCTGCAACTACAAATAAAGAGGAGGCGAAAAATAATGAAGTTACAATTGCAGCATTAGAGAAAAGCATTGCTAAGTACAAAGAAGAATATGCAGTTCTAATCAGTCAAGCTCAAGCGATTAAATCAGATTTGGCTACTGTGGAAGCAAAGGTTGCACGTTCTGTTGCATTGATTAAGTCATTGAGTAACGAACGAGCTCGTTGGGAAAGTAGTTCTGAAACTTTTAAATCTCANATGTCCACTATATTTGGTGACTGTTTACTTTCTGCAGCATTTA] consensusID : consensus_7184#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 248 fasta sequence [GCTTCGCCCAGCAATAAGCAAATAGATTCCACTGCCATTTTGACAACGGGAGGAGGATTTTTCATAGCTCTTATCTCTTGGATATCTCTTTTGCGTATTCCCTCGACAGCTTGTTTAGCTTCTGCAACAGCCGGTTCAACTTGACTAAGTTCATTCATAACTAAAGTACGTTTTTCATTAATGTATAATTCTTGATTAGCCAATTCTTCTTGTAATCTTTGACTCATAGTTTTCTTTTTCTCTGCTTT] [+] EMBL CD139656 [GCTTCGCCCAGCAATAAGCAAATAGATTCCACTGCCATTTTGACAACGGGAGGAGGATTTTTCATAGCTCTTATCTCTTGGATATCTCTTTTGCGTATTCCCTCGACAGCTTGTTTAGCTTCTGCAACAGCCGGTTCAACTTGACTAAGTTCATTCATAACTAAAGTACGTTTTTCATTAATGTATAATTCTTGATTAGCCAATTCTTCTTGTAATCTTTGACTCATAGTTTTCTTTTTCTCTGCTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7184#0 --------------------------------------------------ACGTTCTTAC 10 consensus_7184#1 AGTGGAATCTATTTGCTTATTGCTGGGCGAAGCATCCACTGATTGGAATCAAATTTTGAA 60 consensus_7184#2 ------------------------------------------------------------ consensus_7184#0 TTAATTCGTGACAACTTTATCTCGTCT----ATTGTGAATTTTAACACTGAGGATATTAC 66 consensus_7184#1 AATTCTTGTAAAAGATTCATTCGTTCCCAGCATTATCAATTTTAACACTGATGATGTAAC 120 consensus_7184#2 ------------------------------------------------------------ consensus_7184#0 TGATAGCATCAGAGAAGCAATGAAAAAGAAGTATATCAGCAATCCTGATTATAATTTTGA 126 consensus_7184#1 TGATAGCATCAGAGAAACAATGAAAAAGAAGTATATCAGCAATCCTGATTATAATTTTGA 180 consensus_7184#2 ------------------------------------------------------------ consensus_7184#0 GAAGGTTAACCGAGCCAGTAGTGCTTGTGGACCAATGGTGAAATGGGCTATAGCTCAGAT 186 consensus_7184#1 GAAAGTTAACCGAGCCAGTAGTGCTTGTGGACCAATGGTGAAATGGGCTATAGCTCAGAT 240 consensus_7184#2 ------------------------------------------------------------ consensus_7184#0 AAACTATGCGGATATATTGAAGAAAGTTGAACCACTTCGAAATGAATTGAAAACATTAGA 246 consensus_7184#1 AAACTATGCGGATATATTGAAGAAAGTTGAACCACTTCGAAATGAATTGAAAACATTAGA 300 consensus_7184#2 ---------------------------------GCTTCGCCCAGCAATAAGCA-AATAGA 26 ***** * * * * * * **** consensus_7184#0 GGCTGCTGCAACTACAAATAAAGAGGAGGCGAAAAATAATGAAGTTACAGTTGCAGCATT 306 consensus_7184#1 GGCTGCTGCAACTACAAATAAAGAGGAGGCGAAAAATAATGAAGTTACAATTGCAGCATT 360 consensus_7184#2 TTCCACTGCCATTTTGA-CAACGGGAGGAGGATTTTTCAT--AGCTCTTATCTC----TT 79 * **** * * * ** * * * ** * ** ** * * * ** consensus_7184#0 AGAGAAAAGCATTGCTAAGTACAAAGA-AGAATATGCAGTTCTAATCAGTCAAGCTCAAG 365 consensus_7184#1 AGAGAAAAGCATTGCTAAGTACAAAGA-AGAATATGCAGTTCTAATCAGTCAAGCTCAAG 419 consensus_7184#2 GGATATCTCTTTTGCGTATTCCCTCGACAGCTTGTTTAGCTTCTGCAA--------CAGC 131 ** * **** * * * ** ** * * ** * * ** consensus_7184#0 CGATTAAATCAGATTTGGCTACTGTGGAAGCAAAGGTTGCACGTTCTGTTGCATTGATTA 425 consensus_7184#1 CGATTAAATCAGATTTGGCTACTGTGGAAGCAAAGGTTGCACGTTCTGTTGCATTGATTA 479 consensus_7184#2 CGGTTCAACTTGACTAAGTTCATTCATAACTAAAG----TACGTTTTTCATTAATGTATA 187 ** ** ** ** * * * * ** **** ***** * * ** ** consensus_7184#0 AGTCATTGAGTAACGAACGAGCTCGTTGGGAAAGTAGTTCTGAAACTTTTAAATCTCAAA 485 consensus_7184#1 AGTCATTGAGTAACGAACGAGCTCGTTGGGAAAGTAGTTCTGAAACTTTTAAATCTCANA 539 consensus_7184#2 ATTC-TTGATTAGCCAATT--CTTCTTGTAA-------TCTTTGACTCATAGTTTTCT-- 235 * ** **** ** * ** ** *** * *** *** ** * ** consensus_7184#0 TGTCCACTATATTTGGTGACTGTTTACTTTCTGCAGCATTTATGGCTTATGCTGGCTATT 545 consensus_7184#1 TGTCCACTATATTTGGTGACTGTTTACTTTCTGCAGCATTTA------------------ 581 consensus_7184#2 TTTTCTCTGCTTT----------------------------------------------- 248 * * * ** ** consensus_7184#0 TTGATCAACATTTTCGTTCACGCTCATTTGCCACGTGGTGTCAGCATTTACAATCTGTTG 605 consensus_7184#1 ------------------------------------------------------------ consensus_7184#2 ------------------------------------------------------------ consensus_7184#0 GTATCCATTTCCGTAATGATCTGGCTTTAGTAGAGTACCCATGGC 650 consensus_7184#1 --------------------------------------------- consensus_7184#2 --------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||