cluster # 7186

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Schistosoma mansoni
cluster # 7186 cluster # 7186 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7186#0 length = 594 sequences # 3

consensus_7186#1 length = 531 sequences # 1
consensus_7186#2 length = 466 sequences # 1

consensusID : consensus_7186#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 594
fasta sequence

                              [GGCTTCTTCATAATTTTTATTTCCACGTCGTCGTCGCTAATTGCAGTATGCAAATTCTAGTGTTTAATTAACATAGAGAGTTTATCTGAGATCACAGGAAAATCTTGACCATTATCATCTCTCCTTAAATGTTTGCCGAAACGTATGTAGGTTTTATGCAATAAAGGTACATCACGTCAACTTAAATAGCCGAAGTTTTGGTAGGGCATCCTAAATTTCCAACGAGTTTGCCAGATTACTTTTAAGTTAAGAATTTATTCAGTTTGTGTGTACCCGCTTTCTGAATTTTCCTATCGATGTACAAGACTACAACTAATCAGTCTGTTTTGACAGTTATGCTTTCTGTACGGATCACTTCGATATTGTCACTAAGTCACAAGTGTTTCTAGAAGAGATGGACGGTAGCTAGCGGAATCTCGAAATGAATATCAATTCCAGGATACAGTGGTATTCAGTTAAGAAGCCTTTTTCTCCTCCATCAGTCACCATACATATCCGATCACAATTTGTTTACTCCAGATCAATATGGTTTCTAATCAGACTGAATATGNCACTAGTGAAGTGATTTGNCTTTTATTATTATTTCTTATGTAN]

[+] EMBL CD165522             [GGCTTCTTCATAATTTTTATTTCCACGTCGTCGTCGCTAATTGCAATATGCAAATTCTAGTGTTTAATTAACATAGAGAGTTTATCTGAGATCACAGGAAAATCTTGACCATTATCATCTCTCCTTAAATGTTTGCCGAAACGTATGTAGGTTTTATGCAATAAAGGTACATCACGTCGACTTAAATAGCC                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CD150336             [                                      AATTGCAGTATGCAAATTCTAGTGTTTAATTAACATAGAGAGTTTATCTGAGATCACAGGAAAATCTTGACCATTATCATCTCTCCTTAAATGTTTGCCGAAACGTATGTAGGTTTTATGCAATAAAGGTACATCACGTCAACTTAAATAGCCGAAGTTTTGGTAGGGCATCCTAAATTTCCAACGAGTTTGCCAGATTACTTTTAAGTTAAGAATTTATTCAGTTTGTGTGTACCCGCTTTCTGAATTTTCCTATCGATGTACAAGACTACAACTAATCAGTCTGTTTTGACAGTTATGCTTTCTGTACGGATCACTTCGATATTGTCACTAAGTCACAAGTGTTTCTAGAAGAGATGGACGGTAGCTAGCGGAATCTCGAAATGAATATCAATTCCAGGATACAGTGGTATTCAGTTAAGAAGCCTTTTTCTCCTCCATCAGTCACCATACATATCCGATCACAATTTGTTTACTCCAGATCAATATGGTTTCTAATCAGACTGAATATGNCACTAGTGAAGTGATTTGNCTTTTATTATTATTTCTTATGTAN]
[+] EMBL CD150352             [                                      AATTGCAGTATGCAAATTCTAGTGTTTAATTAACATAGAGAGTTTATCTGAGATCACAGGAAAATCTTGACCATTATCATCTCTCCTTAAATGTTTGCCGAAACGTATGTAGGTTTTATGCAATAAAGGTACATCACGTCAACTTAAATAGCCGAAGTTTTGGTAGGGCATCCTANATTTCCAACGAGTTTGCCAGATTACTTTTAAGTTAAGAATTTATTCAGTTTGTGTGTACCCGCTTTCTGAATTTTCCTATCGA                                                                                                                                                                                                                                                                                                         ]




>consensus_7186#0
GGCTTCTTCATAATTTTTATTTCCACGTCGTCGTCGCTAATTGCAGTATGCAAATTCTAG
TGTTTAATTAACATAGAGAGTTTATCTGAGATCACAGGAAAATCTTGACCATTATCATCT
CTCCTTAAATGTTTGCCGAAACGTATGTAGGTTTTATGCAATAAAGGTACATCACGTCAA
CTTAAATAGCCGAAGTTTTGGTAGGGCATCCTAAATTTCCAACGAGTTTGCCAGATTACT
TTTAAGTTAAGAATTTATTCAGTTTGTGTGTACCCGCTTTCTGAATTTTCCTATCGATGT
ACAAGACTACAACTAATCAGTCTGTTTTGACAGTTATGCTTTCTGTACGGATCACTTCGA
TATTGTCACTAAGTCACAAGTGTTTCTAGAAGAGATGGACGGTAGCTAGCGGAATCTCGA
AATGAATATCAATTCCAGGATACAGTGGTATTCAGTTAAGAAGCCTTTTTCTCCTCCATC
AGTCACCATACATATCCGATCACAATTTGTTTACTCCAGATCAATATGGTTTCTAATCAG
ACTGAATATGNCACTAGTGAAGTGATTTGNCTTTTATTATTATTTCTTATGTAN

consensusID : consensus_7186#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 531
fasta sequence

                              [CCGAAATGTATGTAGGTTCTATGCAATATAGGTACATCATATCGACATAAATAGCCGAATATTTAGTAGGGCATCTTGAATTGCCAATGAGCTTGCCAAGTGACATTCAAATTTAGAATTTATCCAGTTTTCGTCTACTCATTTTTTAAATCTTCACACTGCTGTTAAAGACTACAACAGATCAGCTTGTTTCGGCATTTGTGCTATTTGTATGGATTACCACGATATTGCCACTTAGTCACAAGTGTTTTTAGCAGAAATGGACGGTAGCTAGCGGAATCTCGAAATGAATATCAACCCCAGAATGTAGTGATATTCAGTTGAGAAGTCTATTTCTCAGTCATCAGTCACCACACATCTCTGCTCATAGTCTATTCACTCCAGTTCAACATGATTTCTGATCAGACTGAATATACAAATAGTGAAGTGTTTTGTCTTTCAATTTCTAATTAGATATGATGTCTGAGCGCACTTCCGAAGATTGCAATAAGCTGGTACCGTACAGTACAACATGTAATTTTATTTAAATTA]

[-] EMBL CD114054             [CCGAAATGTATGTAGGTTCTATGCAATATAGGTACATCATATCGACATAAATAGCCGAATATTTAGTAGGGCATCTTGAATTGCCAATGAGCTTGCCAAGTGACATTCAAATTTAGAATTTATCCAGTTTTCGTCTACTCATTTTTTAAATCTTCACACTGCTGTTAAAGACTACAACAGATCAGCTTGTTTCGGCATTTGTGCTATTTGTATGGATTACCACGATATTGCCACTTAGTCACAAGTGTTTTTAGCAGAAATGGACGGTAGCTAGCGGAATCTCGAAATGAATATCAACCCCAGAATGTAGTGATATTCAGTTGAGAAGTCTATTTCTCAGTCATCAGTCACCACACATCTCTGCTCATAGTCTATTCACTCCAGTTCAACATGATTTCTGATCAGACTGAATATACAAATAGTGAAGTGTTTTGTCTTTCAATTTCTAATTAGATATGATGTCTGAGCGCACTTCCGAAGATTGCAATAAGCTGGTACCGTACAGTACAACATGTAATTTTATTTAAATTA]




>consensus_7186#1
CCGAAATGTATGTAGGTTCTATGCAATATAGGTACATCATATCGACATAAATAGCCGAAT
ATTTAGTAGGGCATCTTGAATTGCCAATGAGCTTGCCAAGTGACATTCAAATTTAGAATT
TATCCAGTTTTCGTCTACTCATTTTTTAAATCTTCACACTGCTGTTAAAGACTACAACAG
ATCAGCTTGTTTCGGCATTTGTGCTATTTGTATGGATTACCACGATATTGCCACTTAGTC
ACAAGTGTTTTTAGCAGAAATGGACGGTAGCTAGCGGAATCTCGAAATGAATATCAACCC
CAGAATGTAGTGATATTCAGTTGAGAAGTCTATTTCTCAGTCATCAGTCACCACACATCT
CTGCTCATAGTCTATTCACTCCAGTTCAACATGATTTCTGATCAGACTGAATATACAAAT
AGTGAAGTGTTTTGTCTTTCAATTTCTAATTAGATATGATGTCTGAGCGCACTTCCGAAG
ATTGCAATAAGCTGGTACCGTACAGTACAACATGTAATTTTATTTAAATTA

consensusID : consensus_7186#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 466
fasta sequence

                              [TTATCTGAGATCACAGGAAAATCTTGACCATTATCACCTCTCCTTAAATGTTTGCCGAAATGTATGTAGGTTTTATGCAATAAAGGTACATCACGTCGACTTAAATAGCCGAAGTTTTGGTAGGGCCTCCTAAATTTCCAATCAATTTGCCAGATGACTTTTAAGTTAAAAATTTATTCAGTTTGTGTGTACCCGCTTTCTGAATTTTCCTATCGATGTACGAGACTACAACTAATCAGTCTGTTTAGACATTTTTTCTTCCACTTCGATATTGTCACTAAGTCACAAGTGTTTCTAGAAGAGATGGACGGTAGCTAGCAGAATCTCGAAATGAATATCAACCCCACAATGTAGTGATATTCAGTTAAGAAGCCTTTTTCTCCTCCATCAGTCACCATACATCTCTGATCACAATTTATTTACTCCAGATCAATATGGTTTCTANNNATAACTGATATGNCACTAG]

[+] EMBL CD156359             [TTATCTGAGATCACAGGAAAATCTTGACCATTATCACCTCTCCTTAAATGTTTGCCGAAATGTATGTAGGTTTTATGCAATAAAGGTACATCACGTCGACTTAAATAGCCGAAGTTTTGGTAGGGCCTCCTAAATTTCCAATCAATTTGCCAGATGACTTTTAAGTTAAAAATTTATTCAGTTTGTGTGTACCCGCTTTCTGAATTTTCCTATCGATGTACGAGACTACAACTAATCAGTCTGTTTAGACATTTTTTCTTCCACTTCGATATTGTCACTAAGTCACAAGTGTTTCTAGAAGAGATGGACGGTAGCTAGCAGAATCTCGAAATGAATATCAACCCCACAATGTAGTGATATTCAGTTAAGAAGCCTTTTTCTCCTCCATCAGTCACCATACATCTCTGATCACAATTTATTTACTCCAGATCAATATGGTTTCTANNNATAACTGATATGNCACTAG]




>consensus_7186#2
TTATCTGAGATCACAGGAAAATCTTGACCATTATCACCTCTCCTTAAATGTTTGCCGAAA
TGTATGTAGGTTTTATGCAATAAAGGTACATCACGTCGACTTAAATAGCCGAAGTTTTGG
TAGGGCCTCCTAAATTTCCAATCAATTTGCCAGATGACTTTTAAGTTAAAAATTTATTCA
GTTTGTGTGTACCCGCTTTCTGAATTTTCCTATCGATGTACGAGACTACAACTAATCAGT
CTGTTTAGACATTTTTTCTTCCACTTCGATATTGTCACTAAGTCACAAGTGTTTCTAGAA
GAGATGGACGGTAGCTAGCAGAATCTCGAAATGAATATCAACCCCACAATGTAGTGATAT
TCAGTTAAGAAGCCTTTTTCTCCTCCATCAGTCACCATACATCTCTGATCACAATTTATT
TACTCCAGATCAATATGGTTTCTANNNATAACTGATATGNCACTAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7186#0      GGCTTCTTCATAATTTTTATTTCCACGTCGTCGTCGCTAATTGCAGTATGCAAATTCTAG 60
consensus_7186#2      ------------------------------------------------------------
consensus_7186#1      ------------------------------------------------------------
                                                                                  

consensus_7186#0      TGTTTAATTAACATAGAGAGTTTATCTGAGATCACAGGAAAATCTTGACCATTATCATCT 120
consensus_7186#2      ---------------------TTATCTGAGATCACAGGAAAATCTTGACCATTATCACCT 39
consensus_7186#1      ------------------------------------------------------------
                                                                                  

consensus_7186#0      CTCCTTAAATGTTTGCCGAAACGTATGTAGGTTTTATGCAATAAAGGTACATCACGTCAA 180
consensus_7186#2      CTCCTTAAATGTTTGCCGAAATGTATGTAGGTTTTATGCAATAAAGGTACATCACGTCGA 99
consensus_7186#1      ---------------CCGAAATGTATGTAGGTTCTATGCAATATAGGTACATCATATCGA 45
                                     ****** *********** ********* **********  ** *

consensus_7186#0      CTTAAATAGCCGAAGTTTTGGTAGGGCATCCTAAATTTCCAACGAGTTTGCCAGATTACT 240
consensus_7186#2      CTTAAATAGCCGAAGTTTTGGTAGGGCCTCCTAAATTTCCAATCAATTTGCCAGATGACT 159
consensus_7186#1      CATAAATAGCCGAATATTTAGTAGGGCATCTTGAATTGCCAATGAGCTTGCCAAGTGACA 105
                      * ************  *** ******* ** * **** ****  *  ******  * ** 

consensus_7186#0      TTTAAGTTAAGAATTTATTCAGTTTGTGTGTACCCGCTTTCTGAATTTTCCTATCGATGT 300
consensus_7186#2      TTTAAGTTAAAAATTTATTCAGTTTGTGTGTACCCGCTTTCTGAATTTTCCTATCGATGT 219
consensus_7186#1      TTCAAATTTAGAATTTATCCAGTTTTCGTCTACTCATTTTTTAAATCTTCACACTGCTGT 165
                      ** ** ** * ******* ******  ** *** *  *** * *** ***  *  * ***

consensus_7186#0      ACAAGACTACAACTAATCAGTCTGTTTTGACAGTTATGCTTTCTGTACGGATCACTTCGA 360
consensus_7186#2      ACGAGACTACAACTAATCAGTCTGTTTAGACATTTTTTCTTC----------CACTTCGA 269
consensus_7186#1      TAAAGACTACAACAGATCAGCTTGTTTCGGCATTTGTGCTATTTGTATGGATTACCACGA 225
                         **********  *****  ***** * ** ** * **             **  ***

consensus_7186#0      TATTGTCACTAAGTCACAAGTGTTTCTAGAAGAGATGGACGGTAGCTAGCGGAATCTCGA 420
consensus_7186#2      TATTGTCACTAAGTCACAAGTGTTTCTAGAAGAGATGGACGGTAGCTAGCAGAATCTCGA 329
consensus_7186#1      TATTGCCACTTAGTCACAAGTGTTTTTAGCAGAAATGGACGGTAGCTAGCGGAATCTCGA 285
                      ***** **** ************** *** *** **************** *********

consensus_7186#0      AATGAATATCAATTCCAGGATACAGTGGTATTCAGTTAAGAAGCCTTTTTCTCCTCCATC 480
consensus_7186#2      AATGAATATCAACCCCACAATGTAGTGATATTCAGTTAAGAAGCCTTTTTCTCCTCCATC 389
consensus_7186#1      AATGAATATCAACCCCAGAATGTAGTGATATTCAGTTGAGAAGTCTATTTCTCAGTCATC 345
                      ************  ***  **  **** ********* ***** ** ******   ****

consensus_7186#0      AGTCACCATACATATCCGATCACAATTTGTTTACTCCAGATCAATATGGTTTCTAATCAG 540
consensus_7186#2      AGTCACCATACATCTCTGATCACAATTTATTTACTCCAGATCAATATGGTTTCTANNNAT 449
consensus_7186#1      AGTCACCACACATCTCTGCTCATAGTCTATTCACTCCAGTTCAACATGATTTCTGATCAG 405
                      ******** **** ** * *** * * * ** ******* **** *** *****    * 

consensus_7186#0      ACTGAATATGNCACTAGTGAAGTGATTTGNCTTTTATTATTATTTCTTATGTAN------ 594
consensus_7186#2      AACTGATATGNCACTAG------------------------------------------- 466
consensus_7186#1      ACTGAATATACAAATAGTGAAGTGTTTTGTCTTTCAATTTCTAATTAGATATGATGTCTG 465
                      *    ****   * ***                                           

consensus_7186#0      ------------------------------------------------------------
consensus_7186#2      ------------------------------------------------------------
consensus_7186#1      AGCGCACTTCCGAAGATTGCAATAAGCTGGTACCGTACAGTACAACATGTAATTTTATTT 525
                                                                                  

consensus_7186#0      ------
consensus_7186#2      ------
consensus_7186#1      AAATTA 531