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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7188#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 986 fasta sequence
[CAACCATCATTTTTTAAGCAATTTAAAAATATTTGTACATAATCATTTCGTACAAATCTTAAAAAACAAATTAATGAAAATCCAGATTTTAAAATATTTAATCTATGATCGAGCAGTTATCGATAATTTCACCTGCCGAAGTTTGTTTCACAGTTTTCAATAATGATTTGTATCTTTTTTTCTGAGTTGCCTGTTTATCGCACATATTTGTTAAAGATTTTCTTGACTTTGATCAGTTGGATCGTCTGTTATATTCTTACTGTGTTAAGGGGATTCCACGAAATCTAAAATTATCCAGTTATTCCTCCACTTCCTATTTTATCCGCTACTGTTGTTTTTCCTCTTGGTCACTTCCTTTAATTGCACTGATTTGAAATAGTACATGAACCTGTACATGTTCTTATTTCAAATAGTTATATACTACTTAAAGGTATTCAGTAGAAACATTAAGAATTTGCACGTGCAGGCGAAATGTCAATACATTGTAGATTCGTGAAGTAATACATTCACCACTGAATTACCATATAATCTTAAGGGATTGAATACAATCTTAATGAAATTAACATGTGGATTGATATAAAAATGCATGATAAAATTATTTCTACATTAGAAAATCAAATCTACAAAAATAAATGTTAGGATGTAAAGTCAATTGCAAATATGAGAATCATGCGAAAAATATTTAAGACCAAGTGAGTTAAGAATAAGGAACTTATTTATTAGCACATAATGAAGTGGCATACATAAAAGCTTGTAGAAGTTAAGTAACGAGGAACTACTTGTTAATCGGTTTTCATCGGAAAAGGAAACCAACTGAATAACTTGTTAATAATTTCATGTAACGACCGAAGATGAACGGCGAACACGTTTATCACACATTAGATTTTGTTTCTCAATAAGTTCTGCAACATTGTTCATCTGAAGTAAAAGGTGATACAGTAACATGATATTCATATTTTCATCCTCAGAAAATTTCGGCGATGAAA]
[+] EMBL CD076456 [CAACCATCATTTTTTAAGCAATTTAAAAATATTTGTACATAATCATTTCGTACAAATCTTAAAAAACAAATTAATGAAAATCCAGATTTTAAAATATTTAATCTATGATCGAGCAGTTATCGATAATTTCACCTGCCGAAGTTTGTTTCACAGTTTTCAATAATGATTTGTATCTTTTTTTCTGAGTTGCCTGTTTATCGCACATATTTGTTAAAGATTTTCTTGACTTTGATCAGTTGGATCGTCTGTTATATTCTTACTGTGTTAAGGGGATTCCACGAAATCTAAAATTATCCAGTTATTCCTCCACTTCCTATTTTATCCGCTACTGTTGTTTTTCCTCTTGGTCACTTCCTTTAATTGCACTGATTTGAAATAGTACATGAACCTGTACATGTTCTTATTTCAAATAGTTATATACTACTTAAAGGTATTCAGTAGAAACATTAAGAATTTGCACGTGCAGGCGAAATGTCAATACATTGTAGATTCGTGAAGTAATACATTCACCACTGAATTACCATATAATCTTAAGGGATTGAATACAATCTTAATGAAATTAACATGTGGATTGATATAAAAATGCATGATAAAATTATTTCTACATTAGAAAATCAAATCTACAAAAATAAATGTTAGGATGTAAAG ]
[-] EMBL CD082870 [ TCTTATTTCAAATAGTTATATACTACTTAAAGGTATTCAGTAGAAACATTAAGAATTGNCACGTGCAGGCGAAATGTCAATACATTGTAGATTCGTGAAGTAATACATTCACCACTGAATTACCATATAATCTTAAGGGATTGAATACAATCTTAATGAAATTAACATGTGGATTGATATAAAAATGCATGATAAAATTATTTCTACATAAGAAAATCAAATCTACAAAAATAAATGTTAGGATGTAAAGTCAATTGCAAATATGAGAATCATGCGAAAAATATTTAAGACCAAGTGAGTTAAGAATAAGGAACTTATTTATTAGCACATAATGAAGTGGCATACATAAAAGCTTGTAGAAGTTAAGTAACGAGGAACTACTTGTTAATCGGTTTTCATCGGAAAAGGAAACCAACTGAATAACTTGTTAATAATTTCATGTAACGACCGAAGATGAACGGCGAACACGTTTATCACACATTAGATTTTGTTTCTCAATAAGTTCTGCAACATTGTTCATCTGAAGTAAAAGGTGATACAGTAACATGATATTCATATTTTCATCCTCAGAAAATTTCGGCGATGAAA]
consensusID : consensus_7188#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 596 fasta sequence
[CTTTTTTTGGCCCTTATGGGTGGCCTACTAAATGTCTGAGAGTTAAGTAACGGGGAACTACTTGTAATCGGTTTCCTCGAAAAGGAACCCAACTGAATAACTTGTAATAATTCCTGTACACGCCCGAAGTTGCACGGCGAACACGTTTATCACACATAAGTTTTGTTTCCCAAAAAGTTCTGCAACATTGTTACATCGGAAGTAAAAGGTGATACCGTAACCATGATATTCATATTTACATCCTCAGAAAATTTCGGCGATGAAACATGTTCCATTGATCGACATCGAGACTAAGTTGTTTTGCATGTTGAGAAGATGATCTGGAAATTTTACGTGATAAACCGTTTGATTTTGTACAATCGATTCATCATTTATTCCTGTTATATGGTTATCTAAAGTAATAAGTTTATCACTTATAGTTAGATCATCTGATTGTGATAGCATAGAATTGAATGTAGACTTAACACCTTTCAGACTTATTTTCTTTTTGTAGCCAAATTAATTTGTTCTTTATTTGAAATGTCACGTAATTTATTAATTCCATCTACTGAAGCATCTTTTTCATATTGACATCGACTTGATGCATTGTGTAGTGT]
[-] EMBL AI447057 [CTTTTTTTGGCCCTTATGGGTGGCCTACTAAATGTCTGAGAGTTAAGTAACGGGGAACTACTTGTAATCGGTTTCCTCGAAAAGGAACCCAACTGAATAACTTGTAATAATTCCTGTACACGCCCGAAGTTGCACGGCGAACACGTTTATCACACATAAGTTTTGTTTCCCAAAAAGTTCTGCAACATTGTTACATCGGAAGTAAAAGGTGATACCGTAACCATGATATTCATATTTACATCCTCAGAAAATTTCGGCGATGAAACATGTTCCATTGATCGACATCGAGACTAAGTTGTTTTGCATGTTGAGAAGATGATCTGGAAATTTTACGTGATAAACCGTTTGATTTTGTACAATCGATTCATCATTTATTCCTGTTATATGGTTATCTAAAGTAATAAGTTTATCACTTATAGTTAGATCATCTGATTGTGATAGCATAGAATTGAATGTAGACTTAACACCTTTCAGACTTATTTTCTTTTTGTAGCCAAATTAATTTGTTCTTTATTTGAAATGTCACGTAATTTATTAATTCCATCTACTGAAGCATCTTTTTCATATTGACATCGACTTGATGCATTGTGTAGTGT]
consensusID : consensus_7188#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 429 fasta sequence
[ACACTACACAATGDNTCAAGTCGATGTCAATATGAAAAAGATGCTTCAGTAGATGGAATTAATAAATTACGTGACATTTCAAATAAAGAACAAATTAATTTGGCTACAAAAAGAAAAATAAGTCTGAAAGGTGTTAAGTCTACATTCAATTCTATGCTATCACAATCAGATGATCTAACTATAAGTGATAAACTTATTACTTTAGATAACCATATTACAGGGATAAATGATGGATCGATTGGTCAAAATCCAACGGGTTATCCACGTAAAATTTCCGAGTCATCTTCCATACATGGCAACAACTTTAGTCTCTCGTGTCTGGCTATTGGACATGTGTCTCCTGCGCGATTTTTCGGGGGGTGGATATTGAGTATACGTGCAGTGTACACTTTCATTGAGGTGCACAGTGTGCACCTTTTTTGAGCACAA]
[+] EMBL AI822148 [ACACTACACAATGDNTCAAGTCGATGTCAATATGAAAAAGATGCTTCAGTAGATGGAATTAATAAATTACGTGACATTTCAAATAAAGAACAAATTAATTTGGCTACAAAAAGAAAAATAAGTCTGAAAGGTGTTAAGTCTACATTCAATTCTATGCTATCACAATCAGATGATCTAACTATAAGTGATAAACTTATTACTTTAGATAACCATATTACAGGGATAAATGATGGATCGATTGGTCAAAATCCAACGGGTTATCCACGTAAAATTTCCGAGTCATCTTCCATACATGGCAACAACTTTAGTCTCTCGTGTCTGGCTATTGGACATGTGTCTCCTGCGCGATTTTTCGGGGGGTGGATATTGAGTATACGTGCAGTGTACACTTTCATTGAGGTGCACAGTGTGCACCTTTTTTGAGCACAA]
consensusID : consensus_7188#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 291 fasta sequence
[AAATTCATGTGACGAGCCGAAGATGTACCGCGCACACGTTTTCACACATTAGAGATTTGTTCTCAATAAGTTCTGGCACATTGTTCATCTGGAGTAAAAGGTGATACAGTAACATGATATCATATTTTCATCCTCAGAAAATTTCGGCGATGAAACATGTTCCATTGATCGACATCGAGACTTAAGTTGTTTTGCATGTATAGAAGATGATCTGGAAATTTTACGTGGATAAACCGTTTGATTTTGTACAATCGATTCATCATTTATTCCTGTTATATGGTTATCTAAAGT]
[-] EMBL AI374501 [AAATTCATGTGACGAGCCGAAGATGTACCGCGCACACGTTTTCACACATTAGAGATTTGTTCTCAATAAGTTCTGGCACATTGTTCATCTGGAGTAAAAGGTGATACAGTAACATGATATCATATTTTCATCCTCAGAAAATTTCGGCGATGAAACATGTTCCATTGATCGACATCGAGACTTAAGTTGTTTTGCATGTATAGAAGATGATCTGGAAATTTTACGTGGATAAACCGTTTGATTTTGTACAATCGATTCATCATTTATTCCTGTTATATGGTTATCTAAAGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7188#1 ------------------------------------------------------------
consensus_7188#3 ------------------------------------------------------------
consensus_7188#0 CAACCATCATTTTTTAAGCAATTTAAAAATATTTGTACATAATCATTTCGTACAAATCTT 60
consensus_7188#2 ------------------------------------------------------------
consensus_7188#1 ------------------------------------------------------------
consensus_7188#3 ------------------------------------------------------------
consensus_7188#0 AAAAAACAAATTAATGAAAATCCAGATTTTAAAATATTTAATCTATGATCGAGCAGTTAT 120
consensus_7188#2 ------------------------------------------------------------
consensus_7188#1 ------------------------------------------------------------
consensus_7188#3 ------------------------------------------------------------
consensus_7188#0 CGATAATTTCACCTGCCGAAGTTTGTTTCACAGTTTTCAATAATGATTTGTATCTTTTTT 180
consensus_7188#2 ------------------------------------------------------------
consensus_7188#1 ------------------------------------------------------------
consensus_7188#3 ------------------------------------------------------------
consensus_7188#0 TCTGAGTTGCCTGTTTATCGCACATATTTGTTAAAGATTTTCTTGACTTTGATCAGTTGG 240
consensus_7188#2 ------------------------------------------------------------
consensus_7188#1 ------------------------------------------------------------
consensus_7188#3 ------------------------------------------------------------
consensus_7188#0 ATCGTCTGTTATATTCTTACTGTGTTAAGGGGATTCCACGAAATCTAAAATTATCCAGTT 300
consensus_7188#2 ------------------------------------------------------------
consensus_7188#1 -------------------------------------CTTTTTTTGGCCCTTATGGGTGG 23
consensus_7188#3 ------------------------------------------------------------
consensus_7188#0 ATTCCTCCACTTCCTATTTTATCCGCTACTGTTGTTTTTCCTCTTGGTCACTTCCTTTAA 360
consensus_7188#2 ------------------------------------------------------------
consensus_7188#1 CCTACTAAATGTCTGAGAGTTAAGTAACGGGGAACTACTTGTAATCGGTTTCCTCGAAAA 83
consensus_7188#3 ------------------------------------------------------------
consensus_7188#0 TTGCACTGATTTGAAATAGTACATGAACCTGTACATGTTCTTATTTCAAATAGTTATATA 420
consensus_7188#2 ------------------------------------------------------------
consensus_7188#1 GGAACCCAACTGAATAACTTGTAATAATTCCTGTACACGCCCGAAGTTGCACGGCGAACA 143
consensus_7188#3 ------------------------AAATTCATGTGACGAGCCGAAGATGTACCGCGCACA 36
consensus_7188#0 CTACTTAAAGGTATTCAGTAGAAACATTAAGAATTTGCACGTGCAGGCGAAATGTCAATA 480
consensus_7188#2 ------------------------------------------------------------
consensus_7188#1 CGTTTATCACACAT--AA-GTTTTGTTTCCCAAAAAGTTCTGCA-ACATTGTTA--CATC 197
consensus_7188#3 CGTTT-TCACACATTAGA-GATTTGTT-CTCAATAAGTTCTGGC-ACATTGTT---CATC 89
consensus_7188#0 CATTGTAGATTCGTGAAGTAATACATTCACCACTGAATTACCAT-ATAATCTTAAGGGAT 539
consensus_7188#2 ----------------------ACACTACACAATGDNTCAAGTCGATGTCAATATGAAAA 38
* ** * * *
consensus_7188#1 GGAAGTAAAAGGTGATACCGTAACCATG-ATATTCATATT----TACATCCTCAGAAAAT 252
consensus_7188#3 TGGAGTAAAAGGTGATACAGTAAC-ATG-ATAT-CATATT----TTCATCCTCAGAAAAT 142
consensus_7188#0 TGAATACAATCTTAATGAAATTAACATGTGGATTGATATAAAAATGCATGATAAAATTAT 599
consensus_7188#2 AGATGCTTCAGTAGATGGAATTAATAAATTACGTGACATTTCAAATAAAGAACAAATTAA 98
* ** * * * * ** * * * *
consensus_7188#1 TTCGGCGATGAAACATG----TTCCATTGATCGACATCGAGACT-AAGTTGTTTTGCATG 307
consensus_7188#3 TTCGGCGATGAAACATG----TTCCATTGATCGACATCGAGACTTAAGTTGTTTTGCATG 198
consensus_7188#0 TTCTACATTAGAAAATCAAATCTACAAAAATAAATGTTAGGATGTAAAGTCAATTGCAAA 659
consensus_7188#2 TTTGGCTACAAAAAGAAAAA-TAAGTCTGAAAGGTGTTAAGTCT-ACATTCAATTCTATG 156
** * ** * * * * * ** *
consensus_7188#1 TTGAGAAGATGATCTGGA--AATTTTACGTG-ATAAACCGTTTGATTTTGTACAATCGAT 364
consensus_7188#3 TATAGAAGATGATCTGGA--AATTTTACGTGGATAAACCGTTTGATTTTGTACAATCGAT 256
consensus_7188#0 TAT-GAGAATCATGCGAA--AAATATTTAAGACCAAGTGAGTTAAGAATAAGGAACTTAT 716
consensus_7188#2 CTATCACAATCAGATGATCTAACTATAAGTG-ATAAACTTATT-ACTTTAGATAACCATA 214
* ** * * ** * * * ** ** * * **
consensus_7188#1 TCAT---CATTTATTCCTGT----TATATGGTTATCTAAAGTAATAAGTTTATCACTTAT 417
consensus_7188#3 TCAT---CATTTATTCCTGT----TATATGGTTATCTAAAGT------------------ 291
consensus_7188#0 TTATTAGCACATAATGAAGTGGCATACATAAAAGCTTGTAGAAGTTAAGTAACGAGGAAC 776
consensus_7188#2 TTACAGGGATAAATGATGGATCGATTGGTCAAAATCCAACGGGTT--ATCCACGTAAAAT 272
* * * * * * * *
consensus_7188#1 AGTTAGATCATCTGATTGTGATAGCATAGAATTGAATGTAGACTTAACACCTTTCAGACT 477
consensus_7188#3 ------------------------------------------------------------
consensus_7188#0 TACTTGTTAATC-GGTTTTCATCGGAAAAGGAAACCAACTGAATAACTTGTTAATAATTT 835
consensus_7188#2 TTCCGAGTCATCTTCCATACATGGCAACAACTTTAGTCTCTCGTGTCTGGCTATTGGACA 332
consensus_7188#1 TATTTTCTTTTTGTAGCCAAATTAAT--TTGTTCTTTATTTGAAATGTCACGTAATTTAT 535
consensus_7188#3 ------------------------------------------------------------
consensus_7188#0 CATGTAACGACCGAAGATGAACGGCG--AACACGTTTATCACACATTAGATTTTGTTTCT 893
consensus_7188#2 TGTGTCTCCTGCGCGATTTTTCGGGGGGTGGATATTGAGTATACGTGCAGTGTACACTTT 392
consensus_7188#1 TAATTCCATCTACTGAAG-CATCTTTTTCATATTGACATCGACTTGATGCATTGTGTAGT 594
consensus_7188#3 ------------------------------------------------------------
consensus_7188#0 CAATAAGTTCTGCAACAT-TGTTCATCTGAAGTAAAAGGTGATACAGTAACATGATATTC 952
consensus_7188#2 CATTGAGGTGCACAGTGTGCACCTTTTTTGAGCACAA----------------------- 429
consensus_7188#1 GT-------------------------------- 596
consensus_7188#3 ----------------------------------
consensus_7188#0 ATATTTTCATCCTCAGAAAATTTCGGCGATGAAA 986
consensus_7188#2 ----------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||