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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7195#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 928 fasta sequence
[GATGTACAAGGTAGTTTAGAAGCGATAAAAACACTCCTTTCTACCTATCCATCAGATCAATGTAAAATAGAATACTGCATTACTGGTGTTGGTCCGTTGACTGAATCTGAAGTAGACGCTGCCGCTGCAGTTAATGCAAATGTACTACTATTCAACATTCATGCTCTTCCAGAAGCAACAATTGCAGCTGAACAAAATTGTGTTAAAATTAAAGAATTCAATATTATTTATCGATTGGCTGAAGAAGTTAGGGAATTAGTGAACGAGAAGCTTCCATCAGTATTGGTCGAGAAGATAATTGGTGAAGCGGAAATTCTCCAGCTGTTTACGATTAAAGCATCTAAAAGTGTTGTGAAGACTGGACTTTTACCAGTTGCTGGATGTAGATGTATTAAAGGAAATATTATCGCTAATGTTAATAAAATAGGCCCTATTCTCACAGATCTAGGTGTTGATGGTGAACCGACTGAATTGTGTTACCGCATTGTCCGTCCGACTCACCACTCAACATCACCAAATAATAAACATGGAGAAAATCCAACTACCGCTGAAAAGGACTTTTCTGATTCTAAAAATACCATAGTGGATCGAGCTAACTGTTACTCACTGCGTCATGAAAAATCTACTGTTGACAGTATTCGGAAAGGAGTAGATTGTGGTATTGTATTAGTTTCTCCTGAAGTTCCGGATATTCATAGCAACAATCAAAATGTATCTGCGAAGAATTTCATTTCGCAATGGAAGGTAGGAGATATAATTCAATGTTATGTAACAATAAGTGAAAAAAGTTCAGTTGATTGGGATTTCGAGACCTGTATTTCAGAAACACCAAACACTCGAAATCCCATAACTTGATCATTTTTATTTTTAAAACAATAAACTTTCTGTATCAAATAATCAATTTACTACCAAAAAAAAAAAAAAAAAA]
[+] EMBL CD194216 [GATGTACAAGGTAGTTTAGAAGCGATAAAAACACTCCTTTCTACCTATCCATCAGATCAATGTAAAATAGAATACTGCATTACTGGTGTTGGTCCGTTGACTGAATCTGAAGTAGACGCTGCCGCTGCAGTTAATGCAAATGTACTACTATTCAACATTCATGCTCTTCCAGAAGCAACAATTGCAGCTGAACAAAATTGTGTTAAAATTAAAGAATTCAATATTATTTATCGATTGGCTGAAGAAGTTAGGGAATTAGTGAACGAGAAGCTTCCATCAGTATTGGTCGAGA ]
[+] EMBL CD079232 [ CCTTTCTACCTATCCATCAGATCAATGTAAAATAGAATACTGCATTACTGGTGTTGGTCCGTTGACTGAATCTGAAGTAGACGCTGCCGCTGCAGTTAATGCAAATGTACTACTATTCAACATTCATGCTCTTCCAGAAGCAACAATTGCAGCTGAACAAAATTGTGTTAAAATTAAAGAATTCAATATTATTTATCGATTGGCTGAAGAAGTTAGGGAATTAGTGAACGAGAAGCTTCCATCAGTATTGGTCGAGAAGATAATTGGTGAAGCGGAAATTCTCCAGCTGTTTACGATTAAAGCATCTAAAAGTGTTGTGAAGACTGGACTTTTACCAGTTGCTGGATGTAGATGTATTAAAGGAAATATTATCGCTAATGTTAATAAAATAGGCCCTATTCTCACAGATCTAGGTGTTGATGGTGAACCGACTGAATTGTGTTACCGCATTGTCCGTCCGACTCACCACTCAACATCACCAAATAATAAACATGGAGAAAATCCAACTACCGCTGAAAAGGACTTTTCTGATTCTAAAAATACCATAGTGGATCGAGCTAACTGTTACTCACTGCGTCATGAAAAATCTACTGTTGACAGTATTCGGAAAGGAGTAGATTGTGGTATTGT ]
[-] EMBL CD077175 [ AACATGGAGAAAATCCAACTACCGCTGAAAAGGACTTTTCTGATTCTAAAAATACCATAGTGGATCGAGCTAACTGTTACTCACTGCGTCATGAAAAATCTACTGTTGACAGTATTCGGAAAGGAGTAGATTGTGGTATTGTATTAGTTTCTCCTGAAGTTCCGGATATTCATAGCAACAATCAAAATGTATCTGCGAAGAATTTCATTTCGCAATGGAAGGTAGGAGATATAATTCAATGTTATGTAACAATAAGTGAAAAAAGTTCAGTTGATTGGGATTTCGAGACCTGTATTTCAGAAACACCAAACACTCGAAATCCCATAACTTGATCATTTTTATTTTTAAAACAATAAACTTTCTGTATCAAATAATCAAT ]
[-] EMBL AI395391 [ gtacCTCATTGCGTCATGAAAAATCTACTGTTGACAGTATTCGAAAAGGAGTAGATTGTGGTATTGTATTAGTTTCTCCTGAAGTTCCGGATAATCATAGCAACAATCAAAATGTATCTGCGAAGAATTTCATTTCGCAATGGAAGGTAGGAGATATAATTCAATGTTATGTAACAATAAGTGAAAAAAGTTCAGTTGATTGGGATTTCGAGACCTGTATTTCAGAAACACCAAACACTCGAAATCCCATAACTTGATCATTTTTATTTTTAAAACAATAAACAATCTGTATAAGAGAATAAACTTACTACCAAAAAAAAAAAAAAAAAA]
consensusID : consensus_7195#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 515 fasta sequence
[AATCCGCTTAACTTTCACCCCGAACACCAGTATACATTACAGTATATAATTTTTTTAAAACTTTATTTAGATAGAACGTGATTCAGCTGAATCTAATTTATTGAAAGAAAATTCTAATCAAATTTCCTTACCACTTGTAATCAAAAGTGATGTACAAGGTAGTTTAGAAGCGATAAAAACACTCCTTTCTACCTATCCATCAGATCAATGTAAAATAGAATACTGCATTACTGGTGTTGGTCCGTTGACTGAATCTGAAGTAGACGCTGCCGCTGCAGTTAATGGTTAGTTTTATTTTGTTAGGTTTTGATTTTTTTATCATGGACAACATTTTGTTGACTTGTGTTTTTTAAAGGTTGATTTCAAATGACCAGTTGATCATGTATTCAGAATTTATATTTGTGAAAAATATGAATGACCCTAATCATAACATACCACTTTCATTATATAATTGGTGTCATTATCTATCAGTTGTGTGTATTTATATAGTACTTATGCTGAAGCTTCTATATCCG]
[-] EMBL CD067638 [AATCCGCTTAACTTTCACCCCGAACACCAGTATACATTACAGTATATAATTTTTTTAAAACTTTATTTAGATAGAACGTGATTCAGCTGAATCTAATTTATTGAAAGAAAATTCTAATCAAATTTCCTTACCACTTGTAATCAAAAGTGATGTACAAGGTAGTTTAGAAGCGATAAAAACACTCCTTTCTACCTATCCATCAGATCAATGTAAAATAGAATACTGCATTACTGGTGTTGGTCCGTTGACTGAATCTGAAGTAGACGCTGCCGCTGCAGTTAATGGTTAGTTTTATTTTGTTAGGTTTTGATTTTTTTATCATGGACAACATTTTGTTGACTTGTGTTTTTTAAAGGTTGATTTCAAATGACCAGTTGATCATGTATTCAGAATTTATATTTGTGAAAAATATGAATGACCCTAATCATAACATACCACTTTCATTATATAATTGGTGTCATTATCTATCAGTTGTGTGTATTTATATAGTACTTATGCTGAAGCTTCTATATCCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7195#0 GATGTACAAGGTAGTTTAGAAGCGATAAAAACACTCCTTTCTACCTATCCATCAGATCAA 60
consensus_7195#1 ------------------------------------------------------------
consensus_7195#0 TGTAAAATAGAATACTGCATTACTGGTGTTGGTCCGTTGACTGAATCTGAAGTAGACGCT 120
consensus_7195#1 ------------------------------------------------------------
consensus_7195#0 GCCGCTGCAGTTAATGCAAATGTACT-ACTATTCAACATTCATGCTCTTCCAGAAGCAAC 179
consensus_7195#1 ------------------AATCCGCTTAACTTTCACCCCGAACACCAGTATACATTACAG 42
*** ** * **** * * * * * * *
consensus_7195#0 AATTGCAGCTGAACAAAATTGTGTTAAAATTAAAGA--ATTCAATATTATTTA-TCGATT 236
consensus_7195#1 TATATAATTTTTTTAAAACTTTATTTAGATAGAACGTGATTCAGCTGAATCTAATTTATT 102
** * * **** * * ** * ** ** ***** ** ** * ***
consensus_7195#0 GGCTGAAGAAGTTAGGGAATTAGTGAACGAGAAGCTTCCATCAGTATTGGTCGAGAAGAT 296
consensus_7195#1 GAAAGAAAATTCTAATCAAAT--TTCCTTACCACTTGTAATCAAAAGTGATGTACAAGGT 160
* *** * ** ** * * * * * **** * ** * * *** *
consensus_7195#0 AATTGGTGAAGCGGAAATTCTCCAGCTGTTTACGATTAAAGCATCTAAAAGTGTTGT-GA 355
consensus_7195#1 AGTTTA-GAAGCGATAAAAACACTCCTTTCTACCTATCCATCAGATCAATGTAAAATAGA 219
* ** ****** ** * ** * *** * * ** * ** ** * **
consensus_7195#0 AGACTGGACTTTTACCAGTTGCTGGATGTAGATGTATTAAAGGAAATATTATCGCTAATG 415
consensus_7195#1 ATACTGCATTACTGGTGTTGGTCCGTTGACTGAAT-CTGAAGTAGACGCTGCCGCTGCAG 278
* **** * * * * * * ** * * *** * * * **** *
consensus_7195#0 TTAATAAAATAGGCCCTATTCTCACAGATCTAGGTGTTGATGGTGAACCGACTGAATTGT 475
consensus_7195#1 TTAATG--GTTAGTTTTATTTTGTTAGGTTTTGATTTTTTTATC--ATGGACAACATTTT 334
***** * * **** * ** * * * * ** * * *** *** *
consensus_7195#0 GTTACCGCATTGTCCGTCCGACTCACCACTCAACATCACCAAATAATAAACATGGAGAAA 535
consensus_7195#1 GTTGACTTGTGTTTTTTAAAGGTTG--ATTTCAAATGACCAGTTGATCA-TGTATTCAGA 391
*** * * * * * * * * ** **** * ** * * * *
consensus_7195#0 ATCCAACTACCGCTGAAAAGGACTTTTCTGATTCTAAAAATACCATAGTGGATCGAGCTA 595
consensus_7195#1 ATTTA--TATTTGTGAAAA--ATATGAATGACCCTAATCATAACATACCACTTTCATTAT 447
** * ** ****** * * *** **** *** **** * *
consensus_7195#0 ACTGTTACTCACTGCGTCATGAAAAATCTACTGTTGACAGTATTCGGAAAGGAGT-AGAT 654
consensus_7195#1 ATAATTG------GTGTCATTATCTATCAGTTGTGT---GTATTTATATAGTACTTATGC 498
* ** * ***** * *** *** ***** * ** * * *
consensus_7195#0 TGTGGTAT-TGTATTAGTTTCTCCTGAAGTTCCGGATATTCATAGCAACAATCAAAATGT 713
consensus_7195#1 TGAAGCTTCTATATCCG------------------------------------------- 515
** * * * *** *
consensus_7195#0 ATCTGCGAAGAATTTCATTTCGCAATGGAAGGTAGGAGATATAATTCAATGTTATGTAAC 773
consensus_7195#1 ------------------------------------------------------------
consensus_7195#0 AATAAGTGAAAAAAGTTCAGTTGATTGGGATTTCGAGACCTGTATTTCAGAAACACCAAA 833
consensus_7195#1 ------------------------------------------------------------
consensus_7195#0 CACTCGAAATCCCATAACTTGATCATTTTTATTTTTAAAACAATAAACTTTCTGTATCAA 893
consensus_7195#1 ------------------------------------------------------------
consensus_7195#0 ATAATCAATTTACTACCAAAAAAAAAAAAAAAAAA 928
consensus_7195#1 -----------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||