cluster # 7198

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Schistosoma mansoni
cluster # 7198 cluster # 7198 Sequences # 5 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7198#0 length = 514 sequences # 2
consensus_7198#1 length = 495 sequences # 1

consensus_7198#2 length = 388 sequences # 1
consensus_7198#3 length = 388 sequences # 1

consensusID : consensus_7198#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 514
fasta sequence

                              [AGATGCTTTACGATATTTCCATTCAGCAATTTTATACGCGATAGGATCTTCTTCAAACAATTCGCGCACTCCCGGGAGATCACGAGCTGCTCCATAATACCTGTAGCCCCTATTGCCAGGAACTTCTTTTCCCTCTTTTTCAAGCATTTTCGGTGCTTCTGCTTTGAAGTCAGGACCCCCAAGGTTTTTTATGTGGTCTTCCCAGTGTGATTTCTCTCGGATAAGCTTGTTTATGTCATCATTCAAATCCCTTAGTTTGTATTCACGATTCTGTATTTGAGCTATTTTTCGAGATATCTCATGAACAATTTGACGTCTGTAATATAGAGAATCCTTCAACCCGGTGCACTCAGAGGCGATATATGGCCTTTTCTTCGTCTCTTGAACACGATCCACATAAACTGCTCTCCAACGAGCGAGAGCAGTCATAGCTTTTTCTGCACTACGAGCCATTTCGAACAGGAATGCNCAACGAACAGTTACTTCCAAAATGCACACAGGCAGTTACCACACG]

[+] EMBL CD189393             [AGATGCTTTACGATATTTCCATTCAGCAATTTTATACGCGATAGGATCTTCTTCAAACAATTCGCGCACTCCCGGGAGATCACGAGCTGCTCCATAATACCTGTAGCCCCTATTGCCAGGAACTTCTTTTCCCTCTTTTTCAAGCATTTTCGGTGCTTCTGCTTTGAAGTCAGGACCCCCAAGGTTTTTTATGTGGTCTTCCCAGTGTGATTTCTCTCGGATAAGCTTGTTTATGTCATCATTCAAATCCCTTAGTTTGTATTCACGATTCTGTATTTGAGCTATTTTTCGAGATATCTCATGAACAATTTGACGTCTGTAATATAGAGAATCCTTCAACCCGGTGCACTCAGAGGCGATATATGGCCTTTTCTTCGTCTCTTGAACACGATCCACATAAACTGCTCTCCAACGAGCGAGAGCAGTCATAGCTTTTTCTGCACTACGAGCCATTTCGAACAGGAATGCNCAACGAACAGTTACTTCCAAAATGCACACAGGCAGTTACCACACG]
[-] EMBL CD163498             [                                                                                                      GTAGCCCCTATGGCCAGGAACTTCTTTTCCCTCTTTTTCAAGCATTTTCGGTGCTT    TTTGAAGTCAGGACCCCCAAGGTTTTTTATGTGGTCTTCCCAGTGTGATTTCTCTCGGATAAGCTTGTTTATGTCATCATTCAAATCCCTTAGTTTGTATTCACGATTCTGTATTTGAGCTATTTTTCGAGATATCTCATGAACAATTTGACGTCTGTAATATAGAGAATCCTTCAACCCGGTGCACTCAGAGGCGATATATGGCCTTTTCTTCGTCTCTTGAACACGATCCACATAAACTGCTCTCCAACGAGCGAGAGCAGTCATAGCTTTTTCTGCACTACGAGCCATTTCGAACAGGAATGCCCAACGAACAGTTACTTCCAAAATGCACACAGGCAGTTACCACAC ]




>consensus_7198#0
AGATGCTTTACGATATTTCCATTCAGCAATTTTATACGCGATAGGATCTTCTTCAAACAA
TTCGCGCACTCCCGGGAGATCACGAGCTGCTCCATAATACCTGTAGCCCCTATTGCCAGG
AACTTCTTTTCCCTCTTTTTCAAGCATTTTCGGTGCTTCTGCTTTGAAGTCAGGACCCCC
AAGGTTTTTTATGTGGTCTTCCCAGTGTGATTTCTCTCGGATAAGCTTGTTTATGTCATC
ATTCAAATCCCTTAGTTTGTATTCACGATTCTGTATTTGAGCTATTTTTCGAGATATCTC
ATGAACAATTTGACGTCTGTAATATAGAGAATCCTTCAACCCGGTGCACTCAGAGGCGAT
ATATGGCCTTTTCTTCGTCTCTTGAACACGATCCACATAAACTGCTCTCCAACGAGCGAG
AGCAGTCATAGCTTTTTCTGCACTACGAGCCATTTCGAACAGGAATGCNCAACGAACAGT
TACTTCCAAAATGCACACAGGCAGTTACCACACG

consensusID : consensus_7198#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 495
fasta sequence

                              [TCATACACAGACTAAAGCCACAATAAAATAGTCAAATATCAACTTACGATCTTCTTCAAACAATTCGCGCACTCCCGGGAGATCACGAGCTGCTCCATAATACCTGTAGCCCCTATTGCCAGGAACTTCTTTTCCCTCTTTTTCAAGCATTTTCGGTGCTTCTGCTTTGAAGTCAGGACCCCCAAGGTTTTTTATGTGGTCTTCCCAGTGTGATTTCTCTCGGATAAGCTTGTTTATGTCATCATTCAAATCCCTTAGTTTGTATTCACCTAAGCTAGCTGAAAGTAAAAATTTTGAACAGAAGAAACGAGTCACACGATTCTGTATTTGAGCTATTTTTCGAGATATCTCATGAACAATTTGACGTCTGTAATATAGAGAATCCTTCAACCCGGTGCACTCAGAGGCGATATATGGCCTTTTCTTCGTCTCTTGTACACGATCCACATAAACTGCTCTCCAACGAGCGACGAGCAGTCATAGCTTTTTATGCAC]

[-] EMBL CD060884             [TCATACACAGACTAAAGCCACAATAAAATAGTCAAATATCAACTTACGATCTTCTTCAAACAATTCGCGCACTCCCGGGAGATCACGAGCTGCTCCATAATACCTGTAGCCCCTATTGCCAGGAACTTCTTTTCCCTCTTTTTCAAGCATTTTCGGTGCTTCTGCTTTGAAGTCAGGACCCCCAAGGTTTTTTATGTGGTCTTCCCAGTGTGATTTCTCTCGGATAAGCTTGTTTATGTCATCATTCAAATCCCTTAGTTTGTATTCACCTAAGCTAGCTGAAAGTAAAAATTTTGAACAGAAGAAACGAGTCACACGATTCTGTATTTGAGCTATTTTTCGAGATATCTCATGAACAATTTGACGTCTGTAATATAGAGAATCCTTCAACCCGGTGCACTCAGAGGCGATATATGGCCTTTTCTTCGTCTCTTGTACACGATCCACATAAACTGCTCTCCAACGAGCGACGAGCAGTCATAGCTTTTTATGCAC]




>consensus_7198#1
TCATACACAGACTAAAGCCACAATAAAATAGTCAAATATCAACTTACGATCTTCTTCAAA
CAATTCGCGCACTCCCGGGAGATCACGAGCTGCTCCATAATACCTGTAGCCCCTATTGCC
AGGAACTTCTTTTCCCTCTTTTTCAAGCATTTTCGGTGCTTCTGCTTTGAAGTCAGGACC
CCCAAGGTTTTTTATGTGGTCTTCCCAGTGTGATTTCTCTCGGATAAGCTTGTTTATGTC
ATCATTCAAATCCCTTAGTTTGTATTCACCTAAGCTAGCTGAAAGTAAAAATTTTGAACA
GAAGAAACGAGTCACACGATTCTGTATTTGAGCTATTTTTCGAGATATCTCATGAACAAT
TTGACGTCTGTAATATAGAGAATCCTTCAACCCGGTGCACTCAGAGGCGATATATGGCCT
TTTCTTCGTCTCTTGTACACGATCCACATAAACTGCTCTCCAACGAGCGACGAGCAGTCA
TAGCTTTTTATGCAC

consensusID : consensus_7198#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 388
fasta sequence

                              [AGATGCTTTACGATATTTCCATTCAGCAATTTTATACGCGATAGCTTCTTGTTCATAAACAGCTTCTTGAGGTATAATTACACCATCATCTTCGTCACAGTTACCATAATATGATACGTCAACTAGCTTCATTAACTCGCCTCTAGATTTCCTAGCTACTGGTTGGGGATCTTCTTCAAACAATTCGCGCACTCCCGGGAGATCACGAGCTGCTCCATAATACCTGTAGCCCCTATTGCCAGGAACTTCTTTTCCCTCTTTTTCAAGCATTTTCGGTGCTTCTGCTTTGAAGTCAGGACCCCCAAGGTTTTTTATGTGGTCTTCCCAGTGTGATTTCTCTCGGATAAGCTTGTTTATGTCATCATTCAAATCCCTTAGTTTGTATTCA]

[+] EMBL CD133587             [AGATGCTTTACGATATTTCCATTCAGCAATTTTATACGCGATAGCTTCTTGTTCATAAACAGCTTCTTGAGGTATAATTACACCATCATCTTCGTCACAGTTACCATAATATGATACGTCAACTAGCTTCATTAACTCGCCTCTAGATTTCCTAGCTACTGGTTGGGGATCTTCTTCAAACAATTCGCGCACTCCCGGGAGATCACGAGCTGCTCCATAATACCTGTAGCCCCTATTGCCAGGAACTTCTTTTCCCTCTTTTTCAAGCATTTTCGGTGCTTCTGCTTTGAAGTCAGGACCCCCAAGGTTTTTTATGTGGTCTTCCCAGTGTGATTTCTCTCGGATAAGCTTGTTTATGTCATCATTCAAATCCCTTAGTTTGTATTCA]




>consensus_7198#2
AGATGCTTTACGATATTTCCATTCAGCAATTTTATACGCGATAGCTTCTTGTTCATAAAC
AGCTTCTTGAGGTATAATTACACCATCATCTTCGTCACAGTTACCATAATATGATACGTC
AACTAGCTTCATTAACTCGCCTCTAGATTTCCTAGCTACTGGTTGGGGATCTTCTTCAAA
CAATTCGCGCACTCCCGGGAGATCACGAGCTGCTCCATAATACCTGTAGCCCCTATTGCC
AGGAACTTCTTTTCCCTCTTTTTCAAGCATTTTCGGTGCTTCTGCTTTGAAGTCAGGACC
CCCAAGGTTTTTTATGTGGTCTTCCCAGTGTGATTTCTCTCGGATAAGCTTGTTTATGTC
ATCATTCAAATCCCTTAGTTTGTATTCA

consensusID : consensus_7198#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 388
fasta sequence

                              [ATATCCTGGTTGAGAGTCAGATGCTTTACGATATTTCCATTCAGCAATTTTATACGCGATAGGATCTTCTTCAAACAATTCGCGCACTCCCGGGAGATCACGAGCTGCTCCATAATACCTGTAGCCCCTATTGCCAGGAACTTCTTTTCCCTCTTTTTCAAGCATTTTCGGTGCTTTTTGAAGTCAGGACCCCCAAGGTTTTTTATGTGGTCTTCCCAGTGTGATTTCTCTCGGATAAGCTTGTTTATGTCATCATTCAAATCCCTTAGTTTGTATTCACCTAAGCTAGCTGAAAGTAAAAATTTTGAACAGAAGAAACGAGTCACACGATTCTGTATTTGAGCTATTTTTCGAGATATCTCATGAACAATTTGACGTCTGTAATATA]

[+] EMBL CD179478             [ATATCCTGGTTGAGAGTCAGATGCTTTACGATATTTCCATTCAGCAATTTTATACGCGATAGGATCTTCTTCAAACAATTCGCGCACTCCCGGGAGATCACGAGCTGCTCCATAATACCTGTAGCCCCTATTGCCAGGAACTTCTTTTCCCTCTTTTTCAAGCATTTTCGGTGCTTTTTGAAGTCAGGACCCCCAAGGTTTTTTATGTGGTCTTCCCAGTGTGATTTCTCTCGGATAAGCTTGTTTATGTCATCATTCAAATCCCTTAGTTTGTATTCACCTAAGCTAGCTGAAAGTAAAAATTTTGAACAGAAGAAACGAGTCACACGATTCTGTATTTGAGCTATTTTTCGAGATATCTCATGAACAATTTGACGTCTGTAATATA]




>consensus_7198#3
ATATCCTGGTTGAGAGTCAGATGCTTTACGATATTTCCATTCAGCAATTTTATACGCGAT
AGGATCTTCTTCAAACAATTCGCGCACTCCCGGGAGATCACGAGCTGCTCCATAATACCT
GTAGCCCCTATTGCCAGGAACTTCTTTTCCCTCTTTTTCAAGCATTTTCGGTGCTTTTTG
AAGTCAGGACCCCCAAGGTTTTTTATGTGGTCTTCCCAGTGTGATTTCTCTCGGATAAGC
TTGTTTATGTCATCATTCAAATCCCTTAGTTTGTATTCACCTAAGCTAGCTGAAAGTAAA
AATTTTGAACAGAAGAAACGAGTCACACGATTCTGTATTTGAGCTATTTTTCGAGATATC
TCATGAACAATTTGACGTCTGTAATATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7198#1      ------------------------------------------------------------
consensus_7198#3      ------------------------------------------------------------
consensus_7198#0      ------------------------------------------------------------
consensus_7198#2      AGATGCTTTACGATATTTCCATTCAGCAATTTTATACGCGATAGCTTCTTGTTCATAAAC 60
                                                                                  

consensus_7198#1      ----------------------------------------------------------TC 2
consensus_7198#3      ------------------------------------------ATATCCTGGTTGAGAGTC 18
consensus_7198#0      ------------------------------------------------------------
consensus_7198#2      AGCTTCTTGAGGTATAATTACACCATCATCTTCGTCACAGTTACCATAATATGATACGTC 120
                                                                                  

consensus_7198#1      ATAC-ACAGACTAAAGCCACAATAAAATAGTCAAA-TATCAACTTACGATCTTCTTCAAA 60
consensus_7198#3      AGAT-GCTTTACGATATTTCCATTCAGCAATTTTA-TA-CGCGATAGGATCTTCTTCAAA 75
consensus_7198#0      AGAT-GCTTTACGATATTTCCATTCAGCAATTTTA-TA-CGCGATAGGATCTTCTTCAAA 57
consensus_7198#2      AACTAGCTTCATTAACTCGCCTCTAGATTTCCTAGCTACTGGTTGGGGATCTTCTTCAAA 180
                      *     *      *     *                **         *************

consensus_7198#1      CAATTCGCGCACTCCCGGGAGATCACGAGCTGCTCCATAATACCTGTAGCCCCTATTGCC 120
consensus_7198#3      CAATTCGCGCACTCCCGGGAGATCACGAGCTGCTCCATAATACCTGTAGCCCCTATTGCC 135
consensus_7198#0      CAATTCGCGCACTCCCGGGAGATCACGAGCTGCTCCATAATACCTGTAGCCCCTATTGCC 117
consensus_7198#2      CAATTCGCGCACTCCCGGGAGATCACGAGCTGCTCCATAATACCTGTAGCCCCTATTGCC 240
                      ************************************************************

consensus_7198#1      AGGAACTTCTTTTCCCTCTTTTTCAAGCATTTTCGGTGCTTCTGCTTTGAAGTCAGGACC 180
consensus_7198#3      AGGAACTTCTTTTCCCTCTTTTTCAAGCATTTTCGGTGCTT----TTTGAAGTCAGGACC 191
consensus_7198#0      AGGAACTTCTTTTCCCTCTTTTTCAAGCATTTTCGGTGCTTCTGCTTTGAAGTCAGGACC 177
consensus_7198#2      AGGAACTTCTTTTCCCTCTTTTTCAAGCATTTTCGGTGCTTCTGCTTTGAAGTCAGGACC 300
                      *****************************************    ***************

consensus_7198#1      CCCAAGGTTTTTTATGTGGTCTTCCCAGTGTGATTTCTCTCGGATAAGCTTGTTTATGTC 240
consensus_7198#3      CCCAAGGTTTTTTATGTGGTCTTCCCAGTGTGATTTCTCTCGGATAAGCTTGTTTATGTC 251
consensus_7198#0      CCCAAGGTTTTTTATGTGGTCTTCCCAGTGTGATTTCTCTCGGATAAGCTTGTTTATGTC 237
consensus_7198#2      CCCAAGGTTTTTTATGTGGTCTTCCCAGTGTGATTTCTCTCGGATAAGCTTGTTTATGTC 360
                      ************************************************************

consensus_7198#1      ATCATTCAAATCCCTTAGTTTGTATTCACCTAAGCTAGCTGAAAGTAAAAATTTTGAACA 300
consensus_7198#3      ATCATTCAAATCCCTTAGTTTGTATTCACCTAAGCTAGCTGAAAGTAAAAATTTTGAACA 311
consensus_7198#0      ATCATTCAAATCCCTTAGTTTGTATTCAC------------------------------- 266
consensus_7198#2      ATCATTCAAATCCCTTAGTTTGTATTCA-------------------------------- 388
                      ****************************                                

consensus_7198#1      GAAGAAACGAGTCACACGATTCTGTATTTGAGCTATTTTTCGAGATATCTCATGAACAAT 360
consensus_7198#3      GAAGAAACGAGTCACACGATTCTGTATTTGAGCTATTTTTCGAGATATCTCATGAACAAT 371
consensus_7198#0      -----------------GATTCTGTATTTGAGCTATTTTTCGAGATATCTCATGAACAAT 309
consensus_7198#2      ------------------------------------------------------------
                                                                                  

consensus_7198#1      TTGACGTCTGTAATATAGAGAATCCTTCAACCCGGTGCACTCAGAGGCGATATATGGCCT 420
consensus_7198#3      TTGACGTCTGTAATATA------------------------------------------- 388
consensus_7198#0      TTGACGTCTGTAATATAGAGAATCCTTCAACCCGGTGCACTCAGAGGCGATATATGGCCT 369
consensus_7198#2      ------------------------------------------------------------
                                                                                  

consensus_7198#1      TTTCTTCGTCTCTTGTACACGATCCACATAAACTGCTCTCCAACGAGCGACGAGCAGTCA 480
consensus_7198#3      ------------------------------------------------------------
consensus_7198#0      TTTCTTCGTCTCTTGAACACGATCCACATAAACTGCTCTCCAACGAGCGA-GAGCAGTCA 428
consensus_7198#2      ------------------------------------------------------------
                                                                                  

consensus_7198#1      TAGCTTTTTATGCAC--------------------------------------------- 495
consensus_7198#3      ------------------------------------------------------------
consensus_7198#0      TAGCTTTTTCTGCACTACGAGCCATTTCGAACAGGAATGCNCAACGAACAGTTACTTCCA 488
consensus_7198#2      ------------------------------------------------------------
                                                                                  

consensus_7198#1      --------------------------
consensus_7198#3      --------------------------
consensus_7198#0      AAATGCACACAGGCAGTTACCACACG 514
consensus_7198#2      --------------------------