cluster # 7200

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Schistosoma mansoni
cluster # 7200 cluster # 7200 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7200#0 length = 578 sequences # 2

consensus_7200#1 length = 444 sequences # 1
consensus_7200#2 length = 370 sequences # 2

consensusID : consensus_7200#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 578
fasta sequence

                              [CTACTGTTAATGAACAAACAGTTTATGGATTAGAACCTTCATTACAAACAATATTACCAACTACTATCACAATGAGTACAGATATGTTATACCTTGGTTCTGTTGAAGTAGATCGTCTTGAAAATATGAATGCAGCAATTCGTGGAATTGGAAAAATTCTAAGTTTAGCACAAACATATTCAGATGGTTTACCAAAACGATGTGAAGTACAAATTAAAGTGATACCACATGATGGTATTACATTTACTGAAAAATATAACGTGCCGTATGGAGGAAAACTATTTAACCAATTAATTATTATGGTGTGAATTAAGTTCCAGAAATTCGAGATTTAATGGAGGCTGATTACGTTCTAAAGGAATGTATGGTTCAAAATATTGGCATTAGTTGCACGTAAACACGTTTTTGGTTACATGAAAATGTTGTTTATGTATTTTGTGAATTGATCATAATCATTCAGCTTTAAATTTAGTACGTTCCATTAATACTATATTCCTACTTTAGGGGTTTATTTGTTCTTCATCATACTACCAGTAGTATTAAACATTCGTCTTCTTCTTCTTCTCAGAATGTCCATC]

[-] EMBL CD194107             [CTACTGTTAATGAACAAACAGTTTATGGATTAGAACCTTCATTACAAACAATATTACCAACTACTATCACAATGAGTACAGATATGTTATACCTTGGTTCTGTTGAAGTAGATCGTCTTGAAAATATGAATGCAGCAATTCGTGGAATTGGAAAAATTCTAAGTTTAGCACAAACATATTCAGATGGTTTACCAAAACGATGTGAAGTACAAATTAAAGTGATACCACATGATGGTATTACATTTACTGAAAAATA                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AI820478             [                                                                                                         AAGTAGATCGTCTCGAAAATATGAATGCAGCAATTCGTGGAATTGGAAAAATTCTAAGTTTAGCACAAACATATTCAGATGGTTTACCAAAACGATGTGAAGTACAAATTAAAGTGATACCACATGATGGGATTACATTTACTGGAAAATATAACGTGCCGTATGGAGGAAAACTATTTAACCAATTAATTATTATGGTGTGAATTAAGTTCCAGAAATTCGAGATTTAATGGAGGCTGATTACGTTCTAAAGGAATGTATGGTTCAAAATATTGGCATTAGTTGCACGTAAACACGTTTTTGGTTACATGAAAATGTTGTTTATGTATTTTGTGAATTGATCATAATCATTCAGCTTTAAATTTAGTACGTTCCATTAATACTATATTCCTACTTTAGGGGTTTATTTGTTCTTCATCATACTACCAGTAGTATTAAACATTCGTCTTCTTCTTCTTCTCAGAATGTCCATC]




>consensus_7200#0
CTACTGTTAATGAACAAACAGTTTATGGATTAGAACCTTCATTACAAACAATATTACCAA
CTACTATCACAATGAGTACAGATATGTTATACCTTGGTTCTGTTGAAGTAGATCGTCTTG
AAAATATGAATGCAGCAATTCGTGGAATTGGAAAAATTCTAAGTTTAGCACAAACATATT
CAGATGGTTTACCAAAACGATGTGAAGTACAAATTAAAGTGATACCACATGATGGTATTA
CATTTACTGAAAAATATAACGTGCCGTATGGAGGAAAACTATTTAACCAATTAATTATTA
TGGTGTGAATTAAGTTCCAGAAATTCGAGATTTAATGGAGGCTGATTACGTTCTAAAGGA
ATGTATGGTTCAAAATATTGGCATTAGTTGCACGTAAACACGTTTTTGGTTACATGAAAA
TGTTGTTTATGTATTTTGTGAATTGATCATAATCATTCAGCTTTAAATTTAGTACGTTCC
ATTAATACTATATTCCTACTTTAGGGGTTTATTTGTTCTTCATCATACTACCAGTAGTAT
TAAACATTCGTCTTCTTCTTCTTCTCAGAATGTCCATC

consensusID : consensus_7200#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 444
fasta sequence

                              [AGATCCAGAAAATCGAGAATTTAATGATGCTGAATTACGATCTAAAGGAATGTATGGTTCAAAAATATTGGCATTAGTTGCACGTAAACAACGTTTTTGGTTACATGAAAATGTTGTTTATGTATTTTGTGAAAATTGATCATAATCATTCAGCTTTAAAATTAGTACGNTTCCATTAATACTATATTTCCTAATTTAAGGGATTAATGGATCTTTATTAATACTATCTATAGTATTATACAATTCGTCTTCTTCTTCTTCTTCATGTAATGTTCTATCTCTACATATAATGAAGGATCTCGAACTTCAACAATGATGAATATAAAGTTCCTTTTCAATTTCATTTCTTCTTATCTTTATCAAAAAAGAGATAAACTTTCATTATATGATTAACTTATATTTAACATGGAAACAATTCATATCCATAGGATGATGATGATCATC]

[+] EMBL CD168367             [AGATCCAGAAAATCGAGAATTTAATGATGCTGAATTACGATCTAAAGGAATGTATGGTTCAAAAATATTGGCATTAGTTGCACGTAAACAACGTTTTTGGTTACATGAAAATGTTGTTTATGTATTTTGTGAAAATTGATCATAATCATTCAGCTTTAAAATTAGTACGNTTCCATTAATACTATATTTCCTAATTTAAGGGATTAATGGATCTTTATTAATACTATCTATAGTATTATACAATTCGTCTTCTTCTTCTTCTTCATGTAATGTTCTATCTCTACATATAATGAAGGATCTCGAACTTCAACAATGATGAATATAAAGTTCCTTTTCAATTTCATTTCTTCTTATCTTTATCAAAAAAGAGATAAACTTTCATTATATGATTAACTTATATTTAACATGGAAACAATTCATATCCATAGGATGATGATGATCATC]




>consensus_7200#1
AGATCCAGAAAATCGAGAATTTAATGATGCTGAATTACGATCTAAAGGAATGTATGGTTC
AAAAATATTGGCATTAGTTGCACGTAAACAACGTTTTTGGTTACATGAAAATGTTGTTTA
TGTATTTTGTGAAAATTGATCATAATCATTCAGCTTTAAAATTAGTACGNTTCCATTAAT
ACTATATTTCCTAATTTAAGGGATTAATGGATCTTTATTAATACTATCTATAGTATTATA
CAATTCGTCTTCTTCTTCTTCTTCATGTAATGTTCTATCTCTACATATAATGAAGGATCT
CGAACTTCAACAATGATGAATATAAAGTTCCTTTTCAATTTCATTTCTTCTTATCTTTAT
CAAAAAAGAGATAAACTTTCATTATATGATTAACTTATATTTAACATGGAAACAATTCAT
ATCCATAGGATGATGATGATCATC

consensusID : consensus_7200#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 370
fasta sequence

                              [AAGTAGATCGTCTCTGAAAATATGAATGCAGCAATTCG-TGGAATTGGAAAAATTCTAAGTTTAGCACAAACATATTCAGATGGTTTACCAAAACGATGTGAAGTACAAATTAAAGTGATACCACATGATGGTATTACATTTACTGAAAAATATAAACGTGCCGTATGGAGAAAAACTATTAAACCCAATTATTTATTAAGGTGTGGATTAGATCCAGAAATCCGAGAATTTAATGATGCTGATTACGATCTAAAGGAATGTATGGTTCAAAAATATTGGCATTAGTTGCACGTAAACAACGTTTTTGGTAAAAGAAAATGTTGTTTATGCATTGGGGAAATGGACCAAAACCACCGAGCTCAAATAAGGA]

[+] EMBL AI882630             [AAGTAGATCGTCTCTGAAAATATGAATGCAGCAATTCG TGGAATTGGAAAAATTCTAAGTTTAGCACAAACATATTCAGATGGTTTACCAAAACGATGTGAAGTACAAATTAAAGTGATACCACATGATGGTATTACATTTACTGAAAAATATAAACGTGCCGTATGGAGAAAAACTATTAAACCCAATTATTTATTAAGGTGTGGATTAGATCCAGAAATCCGAGAATTTAATGATGCTGATTACGATCTAAAGGAATGTATGGTTCAAAAATATTGGCATTAGTTGCACGTAAACAACGTTTTTGGTAAAAGAAAATGTTGTTTATGCATTGGGGAAATGGACCAAAACCACCGAGCTCAAATAAGGA]
[+] EMBL AI820477             [AAGTAGATCGTCT TGAAAATATGAATGCAGCAATTAGCTGGAATTGGAAAAATTCTAAGTTTAGCACAAACATATTCAGATGGTTTATCACAACGATGTGAAGTAACAATTAAAGTGATACCACATGATGGTATTACATTTACTGCAAAATATAAACGTGCCCTATGGAGAAAACCTATT ACCCCCATTATTTATTATGGTG                                                                                                                                                                       ]




>consensus_7200#2
AAGTAGATCGTCTCTGAAAATATGAATGCAGCAATTCGTGGAATTGGAAAAATTCTAAGT
TTAGCACAAACATATTCAGATGGTTTACCAAAACGATGTGAAGTACAAATTAAAGTGATA
CCACATGATGGTATTACATTTACTGAAAAATATAAACGTGCCGTATGGAGAAAAACTATT
AAACCCAATTATTTATTAAGGTGTGGATTAGATCCAGAAATCCGAGAATTTAATGATGCT
GATTACGATCTAAAGGAATGTATGGTTCAAAAATATTGGCATTAGTTGCACGTAAACAAC
GTTTTTGGTAAAAGAAAATGTTGTTTATGCATTGGGGAAATGGACCAAAACCACCGAGCT
CAAATAAGGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7200#0      CTACTGTTAATGAACAAACAGTTTATGGATTAGAACCTTCATTACAAACAATATTACCAA 60
consensus_7200#2      ------------------------------------------------------------
consensus_7200#1      ----------------------------------------------------------AG 2
                                                                                  

consensus_7200#0      CTACTATCACAATGAGTACAGATATGTTATACCTTGGTTCTGTTGAAGTAGATCGTCT-T 119
consensus_7200#2      ---------------------------------------------AAGTAGATCGTCTCT 15
consensus_7200#1      ATCCAGAAAATCGAGAATTTAATGATGCTGAATTACGATCTAAAGGAATGTATGGTTC-- 60
                                                                    * *  ** **    

consensus_7200#0      GAAAATATGAATGC-AGCAATTCGTGGAA------TTGGAAAAATTCTAAGTTTAGCACA 172
consensus_7200#2      GAAAATATGAATGC-AGCAATTCGTGGAA------TTGGAAAAATTCTAAGTTTAGCACA 68
consensus_7200#1      AAAAATATTGGCATTAGTTGCACGTAAACAACGTTTTTGGTTACATGAAAATGTTGTTTA 120
                       *******       **     ***  *       ** *   *  *  ** * * *   *

consensus_7200#0      AACATATTCAGATGGTTTACCAAAACGATGTGAAGTACAAATTAAAGTGATACCACATGA 232
consensus_7200#2      AACATATTCAGATGGTTTACCAAAACGATGTGAAGTACAAATTAAAGTGATACCACATGA 128
consensus_7200#1      TGTATTTTGTGAAAATTGATCATAATCATTCAGCTTTAAAATTAGTACGNTTCCAT-TAA 179
                         ** **  **   ** * ** **  **      *  ******    * * ***  * *

consensus_7200#0      TGGTAT-TACATTTACTGAAAAATATAA-CGTGCCGTATGGAGGAAAACTATTTAACC-A 289
consensus_7200#2      TGGTAT-TACATTTACTGAAAAATATAAACGTGCCGTATGGAGAAAAACTATTAAACCCA 187
consensus_7200#1      TACTATATTTCCTAATTTAAGGGATTAATGGATCTTTATTAATACTATCTATAGTATTAT 239
                      *  *** *    * * * **     ***  *  *  ***  *    * ****   *    

consensus_7200#0      ATTAATTATTATGGTGTGAATTAAGTTCCAGAA----ATTCGAGATTTAATGGAGGCTGA 345
consensus_7200#2      ATTATTTATTAAGGTGTGGATTA-GATCCAGAA----ATCCGAGAATTTAATGATGCTGA 242
consensus_7200#1      ACAATTCGTCTTCTTCTTCTTCTTCATGTAATGTTCTATCTCTACATATAATGAAG--GA 297
                      *  * *  *     * *   *     *  *       **       *  *  ** *  **

consensus_7200#0      TTACGTTCTAAAGGAATGTATGGTTCAAAA-TATTGGCATTAGTTGCACGTAAACA-CGT 403
consensus_7200#2      TTACGATCTAAAGGAATGTATGGTTCAAAAATATTGGCATTAGTTGCACGTAAACAACGT 302
consensus_7200#1      TCTCGAACTTCAACAATG-ATGAATATAAAGT-TCCTTTTCAATTTCATTTCTTCT-TAT 354
                      *  **  **  *  **** ***  *  *** * *     * * ** **  *   *    *

consensus_7200#0      TTTTGGTTACATGAAAATGTTGTTTATGTATTTTGTGAATTGATCATAATCATTCAGCTT 463
consensus_7200#2      TTTTGGTAA-AAGAAAATGTTGTTTATGCATTGGGGAAATGGACCAAAACCACCGAGCTC 361
consensus_7200#1      CTTTATCAAAAAAGAGATAAACTTT---CATTATATGATTAACTTATATTTAACATGGAA 411
                       ***    * *   * **    ***    ***     * *     * *   *    *   

consensus_7200#0      TAAATTTAGTACGTTCCATTAATACTATATTCCTACTTTAGGGGTTTATTTGTTCTTCAT 523
consensus_7200#2      AAA--TAAGGA------------------------------------------------- 370
consensus_7200#1      ACAATTCATATCCATAGGATGATGATGATCATC--------------------------- 444
                        *  * *                                                    

consensus_7200#0      CATACTACCAGTAGTATTAAACATTCGTCTTCTTCTTCTTCTCAGAATGTCCATC 578
consensus_7200#2      -------------------------------------------------------
consensus_7200#1      -------------------------------------------------------