These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7203#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 893 fasta sequence [AGTTATATTTACAGCAATATTTTTACAAGTTATGTATCTTTTTAGTTAACGGGTTTTGGTGCACTCAATTTATTTAACCTGTGGTTTGGTGTCCAGTGTCCCAAACTTTGGTTAGCATAATAATCCATGGGATAGGCTTCAGATAAATCTCTAGGCCAAAAAACTTGCTCATTTAAAGCAACAAATGCTTCGTATGGTGTAAGTAAAGGTTTAGTGAACTCAACACCCCAGTCAATACTAAGACGAGGACATGCAACCTGAATCCAGGCGTCTACTTGTTCATCGAAAAGCGCTAATTTACTTGGAATTATTTCAGACAGCAATAGTACGATGTAAGTCTTCCCTGATTTTTCCAATTCTATCTGAAGTTGTTTCACAACAGCTGGTGACCCTTGTTTTCCAAGTGTACACTTCATAGGAGATCAAACGTAAGTTCTCCAGGTTTCGTGGTATTTTATTGCTTAACCATTAGGCCAGAGTTCGTTACCTCTGAGGCGATCGATTGGGCAGAATACAGTTTCGGAAGGAAATTATCAGGCAAATACACTACAGGGTTATGTAATCAAAATGATGGTAATAAAAGCATAAATTTTAGTTTACTTACCCAATATTATCCCGAAATTGACAGCATTTCTTGCAGTATCAACGGCTTTTTTTCTATGTTTACGCATTTCTTTATGATCATAGTATTCACGCGTAAATGACTTATCGTAAGGATCATAACGATAAGCAGCTAACAATGGATTAGATATCATAATGGATTCAAGATGAAAGCGACCATCGCCCACGTAGATTAGGGCATCAACACTTTCTACTTTAGGAGATGTACATCCAAGTAGTTTCACCAGGCGATAAAGAGAAGGCACTGAGGAATGGTAACTAAGTAACCGCCT] [+] EMBL CD075919 [AGTTATATTTACAGCAATATTTTTACAAGTTATGTATCTTTTTAGTTAACGGGTTTTGGTGCACTCAATTTATTTAACCTGTGGTTTGGTGTCCAGTGTCCCAAACTTTGGTTAGCATAATAATCCATGGGATAGGCTTCAGATAAATCTCTAGGCCAAAAAACTTGCTCATTTAAAGCAACAAATGCTTCGTATGGTGTAAGTAAAGGTTTAGTGAACTCAACACCCCAGTCAATACTAAGACGAGGACATGCAACCTGAATCCAGGCGTCTACTTGTTCATCGAAAAGCGCTAATTTACTTGGAATTATTTCAGACAGCAATAGTACGATGTAAGTCTTCCCTGATTTTTCCAATTCTATCTGAAGTTGTTTCACAACAGCTGGTGACCCTTGTTTTCCAAGTGTACACTTCATAGGAGATCAAACGTAAGTTCTCCAGGTTTCGTGGTATTTTATTGCTTAACCATTAGGCCAGAGTTCGTTACCTCTGAGGCGATCGATTGGGCAGAATACAGTTTCGGAAGGAAATTATCAGGCAAATACACTACAGGGTTATGTAATCAAAATGATGGTAATAAAAGCATAAATTTTAGTTTACTTACCCAATATTATCCCGAAATTGACAGCA ] [-] EMBL CD185686 [ TGCTCATTTAAAGCAACAAATGCTTCGTATGGTGTAAGTAAAGGTTTAGTGAACTCAACACCCCAGTCAATACTAAGACGAGGACATGCAACCTGAATCCAGGCGTCTACTTGTTCATCGAAAAGCGCTAATTTACTTGGAATTATTTCAGACAGCAATAGTACGATGTA ] [-] EMBL CD082317 [ GTTCATCGAAAAGCGCTAATTTACTTGGAATTATTTCAGACAGCAATAGTACGATGTAAGTCTTCCCTGATTTTTCCAATTCTATCTGAAGTTGTTTCACAACAGCTGGTGACCCTTGTTTTCCAAGTGTACACTTCATAGGAGATCAAACGTAAGTTCTCCAGGTTTCGTGGTATTTTATTGCTTAACCATTAGGCCAGAGTTCGTTACCTCTGAGGCGATCGATTGGGCAGAATACAGTTTCGGAAGGAAATTATCAGGCAAATACACTACAGGGTTATGTAATCAAAATGATGGTAATAAAAGCATAAATTTTAGTTTACTTACCCAATATTATCCCGAAATTGACAGCATTTCTTGCAGTATCAACGGCTTTTTTTCTATGTTTACGCATTTCTTTATGATCATAGTATTCACGCGTAAATGACTTATCGTAAGGATCATAACGATAAGCAGCTAACAATGGATTAGATATCATAATGGATTCAAGATGAAAGCGACCATCGCCCACGTAGATTAGGGCATCAACACTTTCTACTTTAGGAGATGTACATCCAAGTAGTTTCACCAGGCGATAAAGAGAAGGCACTGAGGAATGGTAACTAAGTAACCGCCT] consensusID : consensus_7203#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 720 fasta sequence [CAGCTGGGGACCCTTGTTTTCCAAGTGTACCCAATATTATCCCGAAATTGACAGCATTTCTTGCAGTATCAACGGCTTTTTTTCTATGTTTACGCATTTCTTTATGATCATAGTATTCACGCGTAAATGACTTATCGTAAGGATCATAACGATAAGCAGCTAACAATGGATTAGATATCATAATGGATTCAAGATGAAAGCGACCATCGCCCACGTAGATTAGGGCATCAACACCTTCTACTTTAGGAGATGTACATCCAAGTATTTCACCAGGCGATAAAGGAAGGCACTGAGGAATGGTAACTAAGTAACCGGCTTCTAATAATGGTTGTTTAGCAGTCTGCAAACTAGTAACAAATTGTATTGTAGAAACAAGGGCTAAACGAGAAGATTTCTCAAAGTTAGCCTTTACACTATCTATGAGATGGACGATATCGATTTGAATATCAACAAATACGTATAG-ACGGCCTCGGAGTCCAATGGTATCAAGCAACTATGACCATAATGTACAAGTAAGTCAACACCAAGAGCTTTTGCAGTCAGCTCCCCTACACAACAAGCTCCATAAGTCACATCGCCCAAAATTACAACATCAATATCTTTAATACTGTCCTCAGCTACAGTAGAACTGTTAGTAGAGATAGAAAGAGCGGGACCTGAGGTTTCGCCACAACGAATAAAGTAATTTCGGATGATTTCGGAAATCGGTATTGCAAACAA] [-] EMBL CD083478 [CAGCTGGGGACCCTTGTTTTCCAAGTGTACCCAATATTATCCCGAAATTGACAGCATTTCTTGCAGTATCAACGGCTTTTTTTCTATGTTTACGCATTTCTTTATGATCATAGTATTCACGCGTAAATGACTTATCGTAAGGATCATAACGATAAGCAGCTAACAATGGATTAGATATCATAATGGATTCAAGATGAAAGCGACCATCGCCCACGTAGATTAGGGCATCAACACCTTCTACTTTAGGAGATGTACATCCAAGTATTTCACCAGGCGATAAAGGAAGGCACTGAGGAATGGTAACTAAGTAACCGGCTTCTAATAATGGTTGTTTAGCAGTCTGCAAACTAGTAACAAATTGTATTGTAGAAACAAGGGCTAAACGAGAAGATTTCTCAAAGTTAGCCTTTACACTATCTATGAGATGGACGATATCGATTTGAATATCAACAAATACGTATAG ACGGCCTCG ] [-] EMBL CD178604 [ TGGTAACTAAGTAACCGGCTTCTAATAATGGTTGTTTAGCAGTCTGCAAACTAGTAACAAATTGTATTGTAGAAACAAGGGCTAAACGAGAAGATTTCTCAAAGTTAGCCTTTACACTATCTATGAGATGGACGATATCGATTTGAATATCAACAAATACGTATAGAACGGAAATTGAGTCCAATGGTATCAAGCAACTATGACCATAATGTACAAGTAAGTCAACACCAAGAGCTTTTGCAGTCAGCTCCCCTACACAACAAGCTCCATAAGTCACATCGCCCAAAATTACAACATCAATATCTTTAATACTGTCCTCAGCTACAGTAGAACTGTTAGTAGAGATAGAAAGAGCGGGACCTGAGGTTTCGCCACAACGAATAAAGTAATTTCGGATGATTTCGGAAATCGGTATTGCAAACAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7203#0 AGTTATATTTACAGCAATATTTTTACAAGTTATGTATCTTTTTAGTTAACGGGTTTTGGT 60 consensus_7203#1 --------------------------CAGCTGGGGACCCTTGTTTTCCA--------AGT 26 ** * * * * ** * * * ** consensus_7203#0 GCACTCAAT-TTATTT---AACCTGTGGTTTGGTGTCCAGTGTCCCAAACTTTGGTTAGC 116 consensus_7203#1 GTACCCAATATTATCCCGAAATTGACAGCATTTCTTGCAGTATCAACGGCTTTT-TTTCT 85 * ** **** **** ** * * * **** ** **** ** consensus_7203#0 ATAATAATCCATGGGATAGGCTTCAGATAAATCTCTAGGCCAAAAAACTTGCTCATTTAA 176 consensus_7203#1 ATGTTTACGCATTTCTTTATGATCATA---GTATTCACGCGTAAA---TGACTTATCGTA 139 ** * * *** * *** * * * * ** *** * ** ** * consensus_7203#0 AGCAACAAATGCTTCGTATGGTGTAAGTAAAGGTTTAGTGAACTCAACACCCCAGTCAAT 236 consensus_7203#1 AGGATCATA---ACGATAAGCAGCTAACAATGGATTAGATATCATAATGG---ATTCAAG 193 ** * ** * ** * * * ** ** **** * * ** * **** consensus_7203#0 ACTAAGACGAGGACATGCAACCTGAATCCAGGCGTCTACTTGTTCATCGAAAAGCGCTAA 296 consensus_7203#1 ATGAAAGCGACCATCGCCCACGTAGATTAGGGCATCAACACCTTCTACTTTAGGAGATGT 253 * ** *** * * ** * ** *** ** ** *** * * * * * consensus_7203#0 TTTACTTGGAATTATTTCAGACAGCAATAGTACGATGTAAG---TCTTCCCTGATTTTTC 353 consensus_7203#1 ACATCCAAGTATTTCACCAGGCGATAAAGGAAGGCACTGAGGAATGGTAACTAAGTAACC 313 * * *** *** * ** * * * * ** * * ** * * * consensus_7203#0 CAATTCTATCTGAAGTTGTTTCACAACAGCTGGTGACCCTTGTTTTCCAAGTGTACACTT 413 consensus_7203#1 GGCTTCTAATAATGGTTGTTT---AGCAGTCTGCAAAC--TAGTAACAAATTGTATTGTA 368 ***** ******* * *** * * * * * * ** **** * consensus_7203#0 CATAGGAGATC-AAACGTAAGTTCTCCAGGTTTCGTGGTATTTTATTGCTTAACCATTAG 472 consensus_7203#1 GAAACAAGGGCTAAACGAGAAGATTTC-----TCAAAGTTAGCCTTTACACTATCTATGA 423 * * ** * ***** * * * ** ** ** * * * * consensus_7203#0 GCCAGAGTTCGTTACCTCTGAGGCGATCGATTGGGCAGAATACAGTTTCGGAAGGAAAT- 531 consensus_7203#1 GATGGACGATATCGATTTGAATATCAACAAATACGTATAG-ACGGCCTCGGAGTCCAATG 482 * ** * * * * * * * * * * ** * ***** *** consensus_7203#0 -TATCAGGCAAATACACTACAGGGTTATGTAATCAAAATGATGGTAATAAAAGCATAAAT 590 consensus_7203#1 GTATCAAGCAACTATG--ACCATAATGTACAAGTAAGTCAACACCA--AGAGCTTTTGCA 538 ***** **** ** ** * * ** ** * * * * * consensus_7203#0 TTTAGTTTACTTACCCAATATTATCCCGAAATTGACAGCATTTCTTGCAGTATCAACGGC 650 consensus_7203#1 GTCAGCTCCCCTACACAACAAGCTCCATAAGTC----ACATCGCCCAAAATTACAACATC 594 * ** * * *** *** * *** ** * *** * * * **** * consensus_7203#0 TTTTTTTCTATGTTTACGCATTTCTTTATGATCATAGTATTCACGCGTAAATGACTTATC 710 consensus_7203#1 AATATCTTTA-----ATACTGTCCTCAGCTACAGTAGAACT-GTTAGTAGA-GATAGAAA 647 * * * ** * * * ** * *** * * *** * ** * consensus_7203#0 GTAAGGATCATAACGATAAGCAGCTAACAATGGATTAGATATCATAATGGATTCAAGATG 770 consensus_7203#1 GAGCGGGACCTGAGGTTTCGCCACAACGAATAAAGTA-ATTTCG-GATGATTTCG----G 701 * ** * * * * * ** * * *** * ** ** ** *** *** * consensus_7203#0 AAAGCGACCATCGCCCACGTAGATTAGGGCATCAACACTTTCTACTTTAGGAGATGTACA 830 consensus_7203#1 AAATCGGT-ATTGCAAACAA---------------------------------------- 720 *** ** ** ** ** consensus_7203#0 TCCAAGTAGTTTCACCAGGCGATAAAGAGAAGGCACTGAGGAATGGTAACTAAGTAACCG 890 consensus_7203#1 ------------------------------------------------------------ consensus_7203#0 CCT 893 consensus_7203#1 --- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||