These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7208#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 810 fasta sequence [TGTCGATCCCAGCATTCCTAAAGCATGTTTACACCGAGAACGTTTAATGCCAATTGTGGAGGAAATAGATCAACGAATTCTCAATGCAATCGATTTTAAAGTTCGTCAGTTCTATCATATTCCAGAAGGTGATCCAGGTTTGCGTCGTGCTAAAGTTGAACATTATTTCAAGCATGTATATCACTCAAATGCTATCGAGGGTAATACGCTTACATTAGCTCAAACTCGATCAATTTTGGAAACACGATTAGCTGTTGGTGGGAAAAGCCTATTGGAGCAAAATGAAGTCCTTGGTATGGATTCAGCTCTCAGATATATTAACAACACTCTTCTACGTGGGGATTTGACTGCTATAACACTAGACAATATATTGGAATTGCATCGTAGACTCTTATCGTTTGTGGATTTGAGGGAGGCTGGAAGATTACGACGTTCTCAGGTGTTTATTGCTGATCACCAACCACCACCTCCATCTAGTGTACCTGATCTAATGTCAGAATTAATTGGTTGGTTAAGTTCTGATGAAATAGCCGATATGCATCCAATTGAATTGGCTGCTCTGACACATTGGAAACTAGTGTTTATTCATCCATTTATTCGTTTCATAGCGAAATGTACTGAACGAACACTTGATGAATATTTAGAAGCCGCTGCAATAAATCATCAGACAAAATCCGACCATGTTACTCGTATTCCAATTGAAAGTGTATTGAATGATGACAAAGAATCAAGTTCAGTAACATTTGCTGTTCATGAGTCAAAATCCTCAAGTTCATCATCATCAGCCTATAATGTTCAATATTCTCCGCC] [+] EMBL CD157352 [TGTCGATCCCAGCATTCCTAAAGCATGTTTACACCGAGAACGTTTAATGCCAATTGTGGAGGAAATAGATCAACGAATTCTCAATGCAATCGATTTTAAAGTTCGTCAGTTCTATCATATTCCAGAAGGTGATCCAGGTTTGCGTCGTGCTAAAGTTGAACATTATTTCAAGCATGTATATCACTCAAATGCTATCGAGGGTAATACGCTTACATTAGCTCAAACTCGATCAATTTTGGAAACACGATTAGCTGTTGGTGGGAAAAGCCTATTGGAGCAAAATGAAGTCCTTGGTATGGATTCAGCTCTCAGATATATTAACAACACTCTTCTACGTGGGGATTTGACT ] [+] EMBL CD157427 [TGTCGATCCCAGCATTCCTAAAGCATGTTTACACCGAGAACGTTTAATGCCAATTGTGGAGGAAATAGATCAACGAATTCTCAATGCAATCGATTTTAAAGTTCGTCAGTTCTATCATATTCCAGAAGGTGATCCAGGTTTGCGTCGTGCTAAAGTTGAACATTATTTCAAGCATGTATATCACTCAAATGCTATCGAGGGTAATACGCTTACATTAGCTCAAACTCGATCAATTTTGGAAACACGATTAGCTGTTGGTGGGAAAAGCCTATTGGAGCAAAATGAAGTCCTTGGTATGGATTCAGCTCTCAGATATATTAACAACACTCTTCTACGTGGGGATTTGACT ] [+] EMBL CD157452 [TGTCGATCCCAGCATTCCTAAAGCATGTTTACACCGAGAACGTTTAATGCCAATTGTGGAGGAAATAGATCAACGAATTCTCAATGCAATCGATTTTAAAGTTCGTCAGTTCTATCATATTCCAGAAGGTGATCCAGGTTTGCGTCGTGCTAAAGTTGAACATTATTTCAAGCATGTATATCACTCAAATGCTATCGAGGGTAATACGCTTACATTAGCTCAAACTCGATCAATTTTGGAAACACGATTAGCTGTTGGTGGGAAAAGCCTATTGGAGCAAAATGAAGTCCTTGGTATGGATTCAGCTCTCAGATATATTAACAACACTCTTCTACGTGGGGATTTGACT ] [+] EMBL CD153433 [ GCCTATTGGAGCAAAATGAAGTCCTTGGTATGGATTCAGCTCTCAGATATATTAACAACACTCTTCTACGTGGGGATTTGACTGCTATAACACTAGACAATATATTGGAATTGCATCGTAGACTCTTATCGTTTGTGGATTTGAGGGAGGCTGGAAGATTACGACGTTCTCAGGTGTTTATTGCTGATCACCAACCACCACCTCCATCTAGTGTACCTGATCTAATGTCAGAATTAATTGGTTGGTTAAGTTCTGATGAAATAGCCGATATGCATCCAATTGAATTGGCTGCTCTGACACATTGGAAACTAGTGTTTATTCATCCATTTATTCGTTTCATAGCGAAATGTACTGAACGAACACTTGATGAATATTTAGAAGCCGCTGCAATAAATCATCAGACAAAATCCGACCATGTTACTCGTATTCCAATTGAAAGTGTATTGAATGATGACAAAGAATCAAGTTCAGTAACATTTGCTGTTCATGAGTCAAAATCCTCAAGTTCATCATCATCAGCCTATAATGTTCAATATTCTCCGCC] consensusID : consensus_7208#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 528 fasta sequence [GAGGACTCAAATGCTATCGAGGGTATACGCTTACATTAGCTCAAACTCGATCAATTTTGGAAACACGATTAGCTGTTGGTGGGAAAAGCCTATTGGAGCAAAATGAAGTCCTTGGTATGGATTCAGCTCTCAGATATATTAACAACACTCTTCTACGTGGGGATTTGACTGCTATAACACTAGACAATATATTGGAATTGCATCGTAGACTCTTATCGTTTGTGGATTTGAGGGAGGCTGGAAGATTACGACGTTCTCAGGTGTTTATTGCTGATCACCAACCACCACCTCCATCTAGTGTACCTGATCTAATGTCAGAATTAATTGGTTGGTTAAGTTCTGATGAAATAGCCGATATGCATCCAATTGAATTGGCTGCTCTGACACATTGGAAACTAGTGTTTATTCATCCATTTTATGATGGAAATGGACGTACTGCTCGACTTCTTATGAATTTGATTTTAATGCGTTCTGGCTTACCTCCAGCTATTATTAAATAGAAGATCGTTTACTTATTATGAATTGCTG] [+] EMBL CD083536 [GAGGACTCAAATGCTATCGAGGGTATACGCTTACATTAGCTCAAACTCGATCAATTTTGGAAACACGATTAGCTGTTGGTGGGAAAAGCCTATTGGAGCAAAATGAAGTCCTTGGTATGGATTCAGCTCTCAGATATATTAACAACACTCTTCTACGTGGGGATTTGACTGCTATAACACTAGACAATATATTGGAATTGCATCGTAGACTCTTATCGTTTGTGGATTTGAGGGAGGCTGGAAGATTACGACGTTCTCAGGTGTTTATTGCTGATCACCAACCACCACCTCCATCTAGTGTACCTGATCTAATGTCAGAATTAATTGGTTGGTTAAGTTCTGATGAAATAGCCGATATGCATCCAATTGAATTGGCTGCTCTGACACATTGGAAACTAGTGTTTATTCATCCATTTTATGATGGAAATGGACGTACTGCTCGACTTCTTATGAATTTGATTTTAATGCGTTCTGGCTTACCTCCAGCTATTATTAAATAGAAGATCGTTTACTTATTATGAATTGCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7208#0 TGTCGATCCCAGCATTCCTAAAGCATGTTTACACCGAGAACGTTTAATGCCAATTGTGGA 60 consensus_7208#1 ------------------------------------------------------------ consensus_7208#0 GGAAATAGATCAACGAATTCTCAATGCAATCGATTTTAAAGTTCGTCAGTTCTATCATAT 120 consensus_7208#1 ------------------------------------------------------------ consensus_7208#0 TCCAGAAGGTGATCCAGGTTTGCGTCGTGCTAAAGTTGAACATTATTTCAAGCATGTATA 180 consensus_7208#1 ----------------------------------------------------------GA 2 * consensus_7208#0 TCACTCAAATGCTATCGAGGGTAATACGCTTACATTAGCTCAAACTCGATCAATTTTGGA 240 consensus_7208#1 GGACTCAAATGCTATCGAGGGTA-TACGCTTACATTAGCTCAAACTCGATCAATTTTGGA 61 ********************* ************************************ consensus_7208#0 AACACGATTAGCTGTTGGTGGGAAAAGCCTATTGGAGCAAAATGAAGTCCTTGGTATGGA 300 consensus_7208#1 AACACGATTAGCTGTTGGTGGGAAAAGCCTATTGGAGCAAAATGAAGTCCTTGGTATGGA 121 ************************************************************ consensus_7208#0 TTCAGCTCTCAGATATATTAACAACACTCTTCTACGTGGGGATTTGACTGCTATAACACT 360 consensus_7208#1 TTCAGCTCTCAGATATATTAACAACACTCTTCTACGTGGGGATTTGACTGCTATAACACT 181 ************************************************************ consensus_7208#0 AGACAATATATTGGAATTGCATCGTAGACTCTTATCGTTTGTGGATTTGAGGGAGGCTGG 420 consensus_7208#1 AGACAATATATTGGAATTGCATCGTAGACTCTTATCGTTTGTGGATTTGAGGGAGGCTGG 241 ************************************************************ consensus_7208#0 AAGATTACGACGTTCTCAGGTGTTTATTGCTGATCACCAACCACCACCTCCATCTAGTGT 480 consensus_7208#1 AAGATTACGACGTTCTCAGGTGTTTATTGCTGATCACCAACCACCACCTCCATCTAGTGT 301 ************************************************************ consensus_7208#0 ACCTGATCTAATGTCAGAATTAATTGGTTGGTTAAGTTCTGATGAAATAGCCGATATGCA 540 consensus_7208#1 ACCTGATCTAATGTCAGAATTAATTGGTTGGTTAAGTTCTGATGAAATAGCCGATATGCA 361 ************************************************************ consensus_7208#0 TCCAATTGAATTGGCTGCTCTGACACATTGGAAACTAGTGTTTATTCATCCATTTATTCG 600 consensus_7208#1 TCCAATTGAATTGGCTGCTCTGACACATTGGAAACTAGTGTTTATTCATCCATT---TTA 418 ****************************************************** * consensus_7208#0 TTTCATAGCGAAATGTACTGAACGAACACTTGATGAATAT--TTAGAAGCCGCTGCAATA 658 consensus_7208#1 TGATGGAAATGGACGTACTGCTCGACTTCTT-ATGAATTTGATTTTAATGCGTTCTGGCT 477 * * * ****** *** *** ****** * ** ** ** * consensus_7208#0 AATCATCAGACAAAATCCGACCATGTTACTCGTATTCCAATTGAAAGTGTATTGAATGAT 718 consensus_7208#1 TACCTCCAGCTATTATTAAATA--GAAGATCGTTTACTTATTATGAAT-TGCTG------ 528 * * *** * ** * * **** * * *** * * * ** consensus_7208#0 GACAAAGAATCAAGTTCAGTAACATTTGCTGTTCATGAGTCAAAATCCTCAAGTTCATCA 778 consensus_7208#1 ------------------------------------------------------------ consensus_7208#0 TCATCAGCCTATAATGTTCAATATTCTCCGCC 810 consensus_7208#1 -------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||