cluster # 7213

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Schistosoma mansoni
cluster # 7213 cluster # 7213 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7213#0 length = 637 sequences # 2

consensus_7213#1 length = 447 sequences # 3

consensusID : consensus_7213#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 637
fasta sequence

                              [GTTTATTTTTAAGAAATTGTAATCATCACAATCAAAGGTAAACGAAACTTGTAACTTCTCGGAAATAAAAATGAACATTTTTTGTACACATTTACAATACATACATGTTACATTACAGCAATACATTTTAGAGAGTCTATTGAGTAAAGTTTGATCTAGTTGCGACAAACCAATGTTCATTTTTACCTAGTCGTAAGATACCTAGACCCGTGGTTTGATCAAATCTGCTAAATGCTGCTTGTATGTTTTCGGGTGATATTTCAAATTTACTGCCCTTCTTTAAAAGGTTAACACTATTTAGTACAACACCTCTAGTGAAACATGTTTGTAAAGCTTCAGATCGATCTTTAAAGTTTGAGGTAAGCATGATTAGGTCTAAAACACTTTCTAAAAGCTGACTATAATTATTTCCAGAACTTTTCAGAGAATCAGTGAAATTTTTGGGATAAATAACTGGTAGAAATTGTGAAGATGGTTCCAAGCATGAAAGGAGGTAGTGACGTTCTGAACTATTCAGTTCATTTTGAATTATTTCCATACTGCTTTTATCGAGCGGCAGGTTATCATCCGAACAATTTACAGAACTCATAGGAAAAAATATTCGAGTGCACCTCGTGCCGATTCNTGCCTGCGAGGC]

[+] EMBL CD074647             [GTTTATTTTTAAGAAATTGTAATCATCACAATCAAAGGTAAACGAAACTTGTAACTTCTCGGAAATAAAAATGAACATTTTTTGTACACATTTACAATACATACATGTTACATTACAGCAATACATTTTAGAGAGTCTATTGAGTAAAGTTTGATCTAGTTGCGACAAACCAATGTTCATTTTTACCTAGTCGTAAGATACCTAGACCCGTGGTTTGATCAAATCTGCTAAATGCTGCTTGTATGTTTTCGGGTGATATTTCAAATTTACTGCCCTTCTTTAAAAGGTTAACACTATTTAGTACAACACCTCTAGTGAAACATGTTTGTAAAGCTTCAGATCGATCTTTAAAGTTTGAGGTAAGCATGATTAGGTCTAAAACACTTTCTAAAAGCTGACTATAATTATTTCCAGAACTTTTCAGAGAATCAGTGAAATTTTTGGGATAAATAACTGGTAGAAATTGTGAAGATGGTTCCAAGCATGAAAGGAGGTAGTGACGTTCTGAACTATTCAGTTCATTTTGAATTATTTCCATACTGCTTTTATCGAGCGGCAGGTTATCATCCGAACA                                                               ]
[-] EMBL CD083375             [                                                                                                                      CAATACATTTAAGAGAGTCTATTGAGTAAAGTTTGATCTAGTTGCGACAAACCAATGTTCATTTTTACCTAGTCGTAAGATACCTAGACCCGTGGTTTGATCAAATCTGCTAAATGCTGCTTGTATGTTTTCGGGTGATATTTCAAATTTACTGCCCTTCTTTAAAAGGTTAACACTATTTAGTACAACACCTCTAGTGAAACATGTTTGTAAAGCTTCAGATCGATCTTTAAAGTTTGAGGTAAGCATGATTAGGTCTAAAACACTTTCTAAAAGCTGACTATAATTATTTCCAGAACTTTTCAGAGAATCAGTGAAATTTTTGGGATAAATAACTGGTAGAAATTGTGAAGATGGTTCCAAGCATGAAAGGAGGTAGTGACGTTCTGAACTATTCAGTTCATTTTGAATTATTTCCATACTGCTTTTATCGAGCGGCAGGTTATCATCCGAACAATTTACAGAACTCATAGGAAAAAATATTCGAGTGCACCTCGTGCCGATTCNTGCCTGCGAGGC]




>consensus_7213#0
GTTTATTTTTAAGAAATTGTAATCATCACAATCAAAGGTAAACGAAACTTGTAACTTCTC
GGAAATAAAAATGAACATTTTTTGTACACATTTACAATACATACATGTTACATTACAGCA
ATACATTTTAGAGAGTCTATTGAGTAAAGTTTGATCTAGTTGCGACAAACCAATGTTCAT
TTTTACCTAGTCGTAAGATACCTAGACCCGTGGTTTGATCAAATCTGCTAAATGCTGCTT
GTATGTTTTCGGGTGATATTTCAAATTTACTGCCCTTCTTTAAAAGGTTAACACTATTTA
GTACAACACCTCTAGTGAAACATGTTTGTAAAGCTTCAGATCGATCTTTAAAGTTTGAGG
TAAGCATGATTAGGTCTAAAACACTTTCTAAAAGCTGACTATAATTATTTCCAGAACTTT
TCAGAGAATCAGTGAAATTTTTGGGATAAATAACTGGTAGAAATTGTGAAGATGGTTCCA
AGCATGAAAGGAGGTAGTGACGTTCTGAACTATTCAGTTCATTTTGAATTATTTCCATAC
TGCTTTTATCGAGCGGCAGGTTATCATCCGAACAATTTACAGAACTCATAGGAAAAAATA
TTCGAGTGCACCTCGTGCCGATTCNTGCCTGCGAGGC

consensusID : consensus_7213#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 447
fasta sequence

                              [TACTGCCCTTCTTTAAAAGGTTAACACTATTTAGTACAAACACCTCTAGTGAAANATGTTTGTAAAGCTTCAGATCGATCTTTAAAGTTTGAGGTAAGCATGATTAGGTCTAAAACACTTTCTAAAAGCTGACTATAATTATTTCCAGAACTTTTCAGAGAATCAGTGAAATTTTTGGGATAAATAACTGGTAGAAATTGTGAAGATGGTT-CCAAGCATGAAAGGAGGTAGTGACGTTCTGAACTATTCAGTTCATTTTGAATTATTTCCATACTGCTTTTATCGAGCGGCAGGTTATCATCCGAACAATTTACAGAACTCATAGGNAAAAATATTCGAGTTGCAAGTTCTGAAGCTTGTAAAGCATAAGTTTATGATCAGTTAACAATTGATCTATTTCATCGGGTCCAAAGAAGGTCAATTGACGAACTAGTTTACCTGATAGTA]

[-] EMBL AI110952             [TACTGCCCTTCTTTAAAAGGTTAACACTATTTAGTACAAACACCTCTAGTGAAANATGTTTGTAAAGCTTCAGATCGATCTTTAAAGTTTGAGGTAAGCATGATTAGGTCTAAAACACTTTCTAAAAGCTGACTATAATTATTTCCAGAACTTTTCAGAGAATCAGTGAAATTTTTGGGATAAATAACTGGTAGAAATTGTGAAGATGGTT CCAAGCATGAAAGGAGGTAGTGACGTTCTGAACTATTCAGTTCATTTTGAATTATTTCCATACTGCTTTTATCGAGCGGCAGGTTATCATCCGAACAATTTACAGAACTCATAGGNAAAAATATTCGAGTTGCAAGTTCTGAAGCTTGTAAAGCATAAGTTTATGATCAGTTAACAATTGATCTATTTCATCGGGTCCAAAGAAGGTCAATTGACGAACTAGTTTACCTGATAGTA]
[-] EMBL AI110914             [                  GGTNAACACTATTTAGTAC AACACCTCTAGTGAAACANGTTTGTAAAGCTTCAGATCGATCTTTAAAGTTTGAGGTAAGCATGATTAGGTCTAAAACACTTTCTAAAAGCTGACTATAATTATTTCCAGAACTTTTCAGAGAATCAGTGAAATTTTTGGGATAAATAACTGGTAGAAATTGTGAAGATGGTT CCAAGCATGAAAGGAGGTAGTGACGTTCTGAACNATTCAGTTCATTTTGAAATATTTCCATACNGCTTTTTTCGAGCGGCAGGTTATCATCCGAACAATTTACAGAACTCATAGGNAAAAATATTCGAGTTGCAAGTTCTGAAGCTTGTAAAGCATAAGTTTATGATCAGTTAACAATTGATCTATTTCATCGGGTCCAAAGAAGGTCAATTGACGAAC                 ]
[-] EMBL AI111092             [                                                                                                                                      ATAATTATTTCCAGAACTTTTCAGAGAATCAGTGAAATTTTTGGGATAAATAACTGGTAGAAATTGTGAAGATGGTTCCCAAGCATGAAAGGAGGTAGTGACGTTCTGAACTATTCAGTTCATTTTGAATTATTTCCATACTGCTTTTATCGAGCGGCAGGTTATCATCCGAACAATTTACAGAACTCATAGGAAAAAATATTCGAGTTGCAAGTTCTGAAGCTTGTAAAGCATAAGTTTATGATCAGTTAACAATTGATCTATTTCATCGGGTCCAAAGAAGGTCAATTGACGAACTAGTTTACCTGATAGTA]




>consensus_7213#1
TACTGCCCTTCTTTAAAAGGTTAACACTATTTAGTACAAACACCTCTAGTGAAANATGTT
TGTAAAGCTTCAGATCGATCTTTAAAGTTTGAGGTAAGCATGATTAGGTCTAAAACACTT
TCTAAAAGCTGACTATAATTATTTCCAGAACTTTTCAGAGAATCAGTGAAATTTTTGGGA
TAAATAACTGGTAGAAATTGTGAAGATGGTTCCAAGCATGAAAGGAGGTAGTGACGTTCT
GAACTATTCAGTTCATTTTGAATTATTTCCATACTGCTTTTATCGAGCGGCAGGTTATCA
TCCGAACAATTTACAGAACTCATAGGNAAAAATATTCGAGTTGCAAGTTCTGAAGCTTGT
AAAGCATAAGTTTATGATCAGTTAACAATTGATCTATTTCATCGGGTCCAAAGAAGGTCA
ATTGACGAACTAGTTTACCTGATAGTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7213#0      GTTTATTTTTAAGAAATTGTAATCATCACAATCAAAGGTAAACGAAACTTGTAACTTCTC 60
consensus_7213#1      ------------------------------------------------------------
                                                                                  

consensus_7213#0      GGAAATAAAAATGAACATTTTTTGTACACATTTACAATACATACATGTTACATTACAGCA 120
consensus_7213#1      ------------------------------------------------------------
                                                                                  

consensus_7213#0      ATACATTTTAGAGAGTCTATTGAGTAAAGTTTGATCTAGTTGCGACAAACCAATGTTCAT 180
consensus_7213#1      ------------------------------------------------------------
                                                                                  

consensus_7213#0      TTTTACCTAGTCGTAAGATACCTAGACCCGTGGTTTGATCAAATCTGCTAAATGCTGCTT 240
consensus_7213#1      ------------------------------------------------------------
                                                                                  

consensus_7213#0      GTATGTTTTCGGGTGATATTTCAAATTTACTGCCCTTCTTTAAAAGGTTAACACTATTTA 300
consensus_7213#1      ---------------------------TACTGCCCTTCTTTAAAAGGTTAACACTATTTA 33
                                                 *********************************

consensus_7213#0      GTACAA-CACCTCTAGTGAAACATGTTTGTAAAGCTTCAGATCGATCTTTAAAGTTTGAG 359
consensus_7213#1      GTACAAACACCTCTAGTGAAANATGTTTGTAAAGCTTCAGATCGATCTTTAAAGTTTGAG 93
                      ****** ************** **************************************

consensus_7213#0      GTAAGCATGATTAGGTCTAAAACACTTTCTAAAAGCTGACTATAATTATTTCCAGAACTT 419
consensus_7213#1      GTAAGCATGATTAGGTCTAAAACACTTTCTAAAAGCTGACTATAATTATTTCCAGAACTT 153
                      ************************************************************

consensus_7213#0      TTCAGAGAATCAGTGAAATTTTTGGGATAAATAACTGGTAGAAATTGTGAAGATGGTTCC 479
consensus_7213#1      TTCAGAGAATCAGTGAAATTTTTGGGATAAATAACTGGTAGAAATTGTGAAGATGGTTCC 213
                      ************************************************************

consensus_7213#0      AAGCATGAAAGGAGGTAGTGACGTTCTGAACTATTCAGTTCATTTTGAATTATTTCCATA 539
consensus_7213#1      AAGCATGAAAGGAGGTAGTGACGTTCTGAACTATTCAGTTCATTTTGAATTATTTCCATA 273
                      ************************************************************

consensus_7213#0      CTGCTTTTATCGAGCGGCAGGTTATCATCCGAACAATTTACAGAACTCATAGGAAAAAAT 599
consensus_7213#1      CTGCTTTTATCGAGCGGCAGGTTATCATCCGAACAATTTACAGAACTCATAGGNAAAAAT 333
                      ***************************************************** ******

consensus_7213#0      ATTCGAGT-GCACCTCGTGCCGATTCNTGCCTGCGAGGC--------------------- 637
consensus_7213#1      ATTCGAGTTGCAAGTTCTGAAGCTTGTAAAGCATAAGTTTATGATCAGTTAACAATTGAT 393
                      ******** ***  *  **  * **          **                       

consensus_7213#0      ------------------------------------------------------
consensus_7213#1      CTATTTCATCGGGTCCAAAGAAGGTCAATTGACGAACTAGTTTACCTGATAGTA 447