cluster # 7214

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Schistosoma mansoni
cluster # 7214 cluster # 7214 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7214#0 length = 1150 sequences # 4

consensus_7214#1 length = 435 sequences # 1

consensusID : consensus_7214#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1150
fasta sequence

                              [GGACCCGAAAACGGCGTCCAAGGAGAACTTAGTTAATTAAAATGGGCATCAAAAACATTTGTAAATTAGCTGGAAAGTTGGGGAAAATGATTGAGCACTATAGCAAATTTACCCCGGTCTCCCTGAGTTTAAAGGACCTTTTATTATTTGGTAATATGAAATAAACTTATCTTACACTGCGATTTCATCTCAAGGTGAAACTGCGCCAGCATCCAAGTCATTCGATTTTTTAAAATATGAACTCCCAGTTCGACTGGGGAATATTATGCAGGAGATCCACCTTTTACCAGAT-TCTTAAGGAAATCAAGATCTATCCAACAGATATGTTTATTGTATGAGGAGACATTCAATAGCATTATCAAGTATGGAGAATGCTCAACAAAGTCGCCTTCCACCGTATCCAGGTTTACGGATGACGTTGACCTTATCTTACAGAAGCATTCGAGAGTAGTTGAAGTAATGGCATCGGGTATCAAAGAAATCCAGAGTGATGGATCGTGGTCTGAGTCACAAGAGTTGCAGCTACAGTATTTTCTGGATCGGTTNTACGTTAGTAGAATTGGTATTCGGACTTTACTGAATCAGCATTTCATGCTATATGGACCTACACTCTGCAACGTACAGTCCCACGTTGGGGGTATCGACCCAGATTGTAGCCCAGTTCAAATCGCAGTAAATGCATACAGTTACTCCAGACTACTGTGTATTCAGGCGTATGGTCGTGCACCAGGGTGTGACATTGAAATCTACGATTGTGTAAATAAAGAGCGTGCATCTGGTAGTTTCAACAAGATTGATTTTTGTGTGGACGCAGCTGGTCATGCGTCGACCAAATCTTATCTTTTGGACAACCAAATGAACTGTGCAGATTTATCTGTGAAGGGGAAAGACATAACATTTTGTTATATACCTGGTCATTTGTTTTATATGTTGTATGAATTGTTGAAAAATTCGATGAGAGCTGTTACTGAAAATCATAATAATGATGGACATTTGCCAAGAATACACATTTTTATATGCAACGGACCTGAAGATATCGTTATTAAAGTGAGAAGTTCAGCTTAATTTTAGTGTAATATTTTTAACTCATAATGCCACCACGTCATAATTTTTTGTGGTTCTTATATCTAATTAGATTTATTTAATAAAA]

[+] EMBL CD078786             [GGACCCGAAAACGGCGTCCAAGGAGAACTTAGTTAATTAAAATGGGCATCAAAAACATTTGTAAATTAGCTGGAAAGTTGGGGAAAATGATTGAGCACTATAGCAAATTTACCCCGGTCTCCCTGAGTTTAAAGGACCTTTTATTATTTGGTAATATGAAATAAACTTATCTTACACTGCGATTTCATCTCAAGGTGAAACTGCGCCAGCATCCAAGTCATTCGATTTTTTAAAATATGAACTCCCAGTTCGACTGGGGAATATTATGCAGGAGATCCACCTTTTACCAGAT TCTTAAGGAAATCAAGATCTATCCAACAGATATGTTTATTGTATGAGGAGACATTCAATAGCATTATCAAGTATGGAGAATGCTCAACAAAGTCGCCTTCCACCGTATCCAGGTTTACGGATGACGTTGACCTTATCTTACAGAAGCATTCGAGAGTAGTTGAAGTAATGGCATCGGGTATCAAAGAAATCCAGAGTGATGGATCGTGGTCTGAGTCACAAGAGTTGCAGCTACAGTATTTTCTGGATCGGTTNTACGTTAGTAGAATTGGTATTCGGACTTTACTGAATCAGCATTTCATGCTATATGGACCTACACTCTGCAACGTACAGTCCCACGTTGGGGGTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CD182166             [                                                                                                                                                                                                                             TCGATTTTTTAAAATATGAACTCCCAGTTCGACTGGGGAATATTATGCAGGAGATCCACCTTTTACCAGATGTCTTAAGGAAATCAAGATCTATCCAACAGATATGTTTATTGTATGAGGAGACATTCAATAGCATTATCAAGTATGGAGAATGCTCAACAAAGTCGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CD113506             [                                                                                                                                                                                                                                                                                                            GAAATCAAGATCTATCCAACAGATATGTTTATTGTATGAGGAGACATTCAATAGCATTATCAAGTATGGAGAATGCTCAACAAAGTCGCCTTCCACCGTATCCAGGTTTACGGATGACGTTGACCTTATCTTACAGAAGCATTCGAGAGTAGTTGAAGTAATGGCATCGGGTATCAAAGAAATCCAGAGTGATGGATCGTGGTCTGAGTCACAAGAGTTGCAGCTACAGTATTTTCTGGATCGGTTTTACGTTAGTAGAATTGGTATTCGGACTTTACTGAATCAGCATTTCATGCTATATGGACCTACACTCTGCAACGTACAGTCCCACGTTGGGGGTATCGACCCAGATTGTAGCCCAGTTCAAATCGCAGTAAATGCATACAGTTACTCCAGACTACTGTGTATTCAGGCGTATGGTCGTGCACCAGGGTGTGACATTGAAATCTACGATTGTGTAAATAAAGAGCGTGCATCTGGTAGTTTCAACAAGATTGATTTTTGTGTGGACGCAGCTGGTCATGCGTCGACCAAATCTTATCTTTTGGACAA                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CD073246             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TCGGACTTTACTGAATCAGCATTTCATGCTATATGGACCTACACTCTGCAACGTACAGTCCCACGTTGGGGGTATCGACCCAGATTGTAGCCCAGTTCAAATCGCAGTAAATGCATACAGTTACTCCAGACTACTGTGTATTCAGGCGTATGGTCGTGCACCGGGGTGTGACATTGAAATCTACGATTGTGTAAATAAAGAGCGTGCATCTGGTAGTTTCAACAAGATTGATTTTTGTGTGGACGCAGCTGGTCATGCGTCGACCAAATCTTATCTTTTGGACAACCAAATGAACTGTGCAGATTTATCTGTGAAGGGGAAAGACATAACATTTTGTTATATACCTGGTCATTTGTTTTATATGTTGTATGAATTGTTGAAAAATTCGATGAGAGCTGTTACTGAAAATCATAATAATGATGGACATTTGCCAAGAATACACATTTTTATATGCAACGGACCTGAAGATATCGTTATTAAAGTGAGAAGTTCAGCTTAATTTTAGTGTAATATTTTTAACTCATAATGCCACCACGTCATAATTTTTTGTGGTTCTTATATCTAATTAGATTTATTTAATAAAA]




>consensus_7214#0
GGACCCGAAAACGGCGTCCAAGGAGAACTTAGTTAATTAAAATGGGCATCAAAAACATTT
GTAAATTAGCTGGAAAGTTGGGGAAAATGATTGAGCACTATAGCAAATTTACCCCGGTCT
CCCTGAGTTTAAAGGACCTTTTATTATTTGGTAATATGAAATAAACTTATCTTACACTGC
GATTTCATCTCAAGGTGAAACTGCGCCAGCATCCAAGTCATTCGATTTTTTAAAATATGA
ACTCCCAGTTCGACTGGGGAATATTATGCAGGAGATCCACCTTTTACCAGATTCTTAAGG
AAATCAAGATCTATCCAACAGATATGTTTATTGTATGAGGAGACATTCAATAGCATTATC
AAGTATGGAGAATGCTCAACAAAGTCGCCTTCCACCGTATCCAGGTTTACGGATGACGTT
GACCTTATCTTACAGAAGCATTCGAGAGTAGTTGAAGTAATGGCATCGGGTATCAAAGAA
ATCCAGAGTGATGGATCGTGGTCTGAGTCACAAGAGTTGCAGCTACAGTATTTTCTGGAT
CGGTTNTACGTTAGTAGAATTGGTATTCGGACTTTACTGAATCAGCATTTCATGCTATAT
GGACCTACACTCTGCAACGTACAGTCCCACGTTGGGGGTATCGACCCAGATTGTAGCCCA
GTTCAAATCGCAGTAAATGCATACAGTTACTCCAGACTACTGTGTATTCAGGCGTATGGT
CGTGCACCAGGGTGTGACATTGAAATCTACGATTGTGTAAATAAAGAGCGTGCATCTGGT
AGTTTCAACAAGATTGATTTTTGTGTGGACGCAGCTGGTCATGCGTCGACCAAATCTTAT
CTTTTGGACAACCAAATGAACTGTGCAGATTTATCTGTGAAGGGGAAAGACATAACATTT
TGTTATATACCTGGTCATTTGTTTTATATGTTGTATGAATTGTTGAAAAATTCGATGAGA
GCTGTTACTGAAAATCATAATAATGATGGACATTTGCCAAGAATACACATTTTTATATGC
AACGGACCTGAAGATATCGTTATTAAAGTGAGAAGTTCAGCTTAATTTTAGTGTAATATT
TTTAACTCATAATGCCACCACGTCATAATTTTTTGTGGTTCTTATATCTAATTAGATTTA
TTTAATAAAA

consensusID : consensus_7214#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 435
fasta sequence

                              [GCATTATCAAGTATGGAGAATGCTCAACAAAGTCGTCATCGACGCAGATAATCCAGGTGTACGGATGACGTTGACCTTATCTTACAGAAGCATTCGAGAGTAGTTGAAGTAATGGCATCGGGTATCAAAGAAATCCAGAGTGATGGATCGTGGTCTGAGTCACAAGAGTTGCAGCTACAGTATTTTCTGGATCGGTTTTACGTTAGTAGAATTGGTATTCGGACTTTACTGAATCAGCATTATTACAGATTTTGGTGGAGGAATGGCGTCTAATATTGTCGAAAAAACATTTCGATACAATTATACAACAGCTGTTCATTCTGCAAATCTACATCCTACTGTACTAAATTTTAAGGACAACTATTCAACAATTCAATCAGCCCATCAAGTGACAGTAAGTGATCGAATGACATATGAAGTTGAATCAGAACGTAA]

[+] EMBL CD110987             [GCATTATCAAGTATGGAGAATGCTCAACAAAGTCGTCATCGACGCAGATAATCCAGGTGTACGGATGACGTTGACCTTATCTTACAGAAGCATTCGAGAGTAGTTGAAGTAATGGCATCGGGTATCAAAGAAATCCAGAGTGATGGATCGTGGTCTGAGTCACAAGAGTTGCAGCTACAGTATTTTCTGGATCGGTTTTACGTTAGTAGAATTGGTATTCGGACTTTACTGAATCAGCATTATTACAGATTTTGGTGGAGGAATGGCGTCTAATATTGTCGAAAAAACATTTCGATACAATTATACAACAGCTGTTCATTCTGCAAATCTACATCCTACTGTACTAAATTTTAAGGACAACTATTCAACAATTCAATCAGCCCATCAAGTGACAGTAAGTGATCGAATGACATATGAAGTTGAATCAGAACGTAA]




>consensus_7214#1
GCATTATCAAGTATGGAGAATGCTCAACAAAGTCGTCATCGACGCAGATAATCCAGGTGT
ACGGATGACGTTGACCTTATCTTACAGAAGCATTCGAGAGTAGTTGAAGTAATGGCATCG
GGTATCAAAGAAATCCAGAGTGATGGATCGTGGTCTGAGTCACAAGAGTTGCAGCTACAG
TATTTTCTGGATCGGTTTTACGTTAGTAGAATTGGTATTCGGACTTTACTGAATCAGCAT
TATTACAGATTTTGGTGGAGGAATGGCGTCTAATATTGTCGAAAAAACATTTCGATACAA
TTATACAACAGCTGTTCATTCTGCAAATCTACATCCTACTGTACTAAATTTTAAGGACAA
CTATTCAACAATTCAATCAGCCCATCAAGTGACAGTAAGTGATCGAATGACATATGAAGT
TGAATCAGAACGTAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7214#0      GGACCCGAAAACGGCGTCCAAGGAGAACTTAGTTAATTAAAATGGGCATCAAAAACATTT 60
consensus_7214#1      ------------------------------------------------------------
                                                                                  

consensus_7214#0      GTAAATTAGCTGGAAAGTTGGGGAAAATGATTGAGCACTATAGCAAATTTACCCCGGTCT 120
consensus_7214#1      ------------------------------------------------------------
                                                                                  

consensus_7214#0      CCCTGAGTTTAAAGGACCTTTTATTATTTGGTAATATGAAATAAACTTATCTTACACTGC 180
consensus_7214#1      ------------------------------------------------------------
                                                                                  

consensus_7214#0      GATTTCATCTCAAGGTGAAACTGCGCCAGCATCCAAGTCATTCGATTTTTTAAAATATGA 240
consensus_7214#1      ------------------------------------------------------------
                                                                                  

consensus_7214#0      ACTCCCAGTTCGACTGGGGAATATTATGCAGGAGATCCACCTTTTACCAGATTCTTAAGG 300
consensus_7214#1      ------------------------------------------------------------
                                                                                  

consensus_7214#0      AAATCAAGATCTATCCAACAGATATGTTTATTGTATGAGGAGACATTCAATAGCATTATC 360
consensus_7214#1      ----------------------------------------------------GCATTATC 8
                                                                          ********

consensus_7214#0      AAGTATGGAGAATGCTCAACAAAGTCGCCTTCCACCGT----ATCCAGGTTTACGGATGA 416
consensus_7214#1      AAGTATGGAGAATGCTCAACAAAGTCGTCATCGACGCAGATAATCCAGGTGTACGGATGA 68
                      *************************** * ** **       ******** *********

consensus_7214#0      CGTTGACCTTATCTTACAGAAGCATTCGAGAGTAGTTGAAGTAATGGCATCGGGTATCAA 476
consensus_7214#1      CGTTGACCTTATCTTACAGAAGCATTCGAGAGTAGTTGAAGTAATGGCATCGGGTATCAA 128
                      ************************************************************

consensus_7214#0      AGAAATCCAGAGTGATGGATCGTGGTCTGAGTCACAAGAGTTGCAGCTACAGTATTTTCT 536
consensus_7214#1      AGAAATCCAGAGTGATGGATCGTGGTCTGAGTCACAAGAGTTGCAGCTACAGTATTTTCT 188
                      ************************************************************

consensus_7214#0      GGATCGGTTNTACGTTAGTAGAATTGGTATTCGGACTTTACTGAATCAGCATTTCATGCT 596
consensus_7214#1      GGATCGGTTTTACGTTAGTAGAATTGGTATTCGGACTTTACTGAATCAGCATTATTACAG 248
                      ********* *******************************************       

consensus_7214#0      ATATGGACCTACACTCTGCAACGTACAGTCCCACGTTGGGGGTATCGACCCAGATTGTAG 656
consensus_7214#1      ATTTTGGTGGAGGAATGGCGTCTAATATTGTCGAAA-AAACATTTCGATACA-ATTATAC 306
                      ** * *    *      **  *  * * *  *          * ****  ** *** ** 

consensus_7214#0      CCCAGTTCAAATCGCAGTAAATGCATACAGTTACTCCAGACTACTGTGTATTCAGGCGTA 716
consensus_7214#1      AACAGCTGTTCATTCTGCAAATCTACATC-CTACTGTACTAAATTTTAAGGACAACTATT 365
                        *** *       * * ****  * *    ****  *    * * *     **    * 

consensus_7214#0      TGGTCGTGCA-CCAGGGTGTGACATTGAAATCTACGATTGTGTAAATAAAGAGCGTGCAT 775
consensus_7214#1      CAACAATTCAATCAGCCCATCAAGTGACAGTAAGTGATCGAATGACATATGAAGTTGAAT 425
                            * **  ***    * *  *   * *    *** *  * *   * **   ** **

consensus_7214#0      CTGGTAGTTTCAACAAGATTGATTTTTGTGTGGACGCAGCTGGTCATGCGTCGACCAAAT 835
consensus_7214#1      CAGAACGTAA-------------------------------------------------- 435
                      * *   **                                                    

consensus_7214#0      CTTATCTTTTGGACAACCAAATGAACTGTGCAGATTTATCTGTGAAGGGGAAAGACATAA 895
consensus_7214#1      ------------------------------------------------------------
                                                                                  

consensus_7214#0      CATTTTGTTATATACCTGGTCATTTGTTTTATATGTTGTATGAATTGTTGAAAAATTCGA 955
consensus_7214#1      ------------------------------------------------------------
                                                                                  

consensus_7214#0      TGAGAGCTGTTACTGAAAATCATAATAATGATGGACATTTGCCAAGAATACACATTTTTA 1015
consensus_7214#1      ------------------------------------------------------------
                                                                                  

consensus_7214#0      TATGCAACGGACCTGAAGATATCGTTATTAAAGTGAGAAGTTCAGCTTAATTTTAGTGTA 1075
consensus_7214#1      ------------------------------------------------------------
                                                                                  

consensus_7214#0      ATATTTTTAACTCATAATGCCACCACGTCATAATTTTTTGTGGTTCTTATATCTAATTAG 1135
consensus_7214#1      ------------------------------------------------------------
                                                                                  

consensus_7214#0      ATTTATTTAATAAAA 1150
consensus_7214#1      ---------------