cluster # 7215

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Schistosoma mansoni
cluster # 7215 cluster # 7215 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7215#0 length = 1041 sequences # 4

consensus_7215#1 length = 299 sequences # 1

consensusID : consensus_7215#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1041
fasta sequence

                              [CTTTTTTTTATTAAGACAAACTTTCTGTCCAATGGATGATGCTACTTTAATAAGATTGATGGATCAAGAAGTCTCTGACAAAGAATCAGGAGATGGTTCAATAACTGAAGATACAGAACAAATGGAGGATATTCCAAATAATATGTTGAATAGTTTACGTTTTCTTGCTAAATGGATGAGTGAAAATCAATCATTTGTAAACAAACCACAAAGTATATCACGAGGATGTTTGGCAAAATATTGTGAATGTCGTCGTGAACTTATCCGTCTAAATTTAGTAAGAGTACGAGAATTATTAAGAAAAGCTGAAAATCCATCATCATCATCTGGCACAGTATCTAAACCAGGATTTCTGCCGCCAAACGTACGTGGTCGCACTAAACGCCTCCCTGGATTCGTTTGGGATATAAGTGCTGTTCGACTTATCAATGAAACAGAAACCGATGAACTTGATTCTGAACATTATGCTATCGCTCTGGGTGTTCTCGTTAAATTAATGCAAAATGAATGTATTTTGTTGGATCGTTTACAGTTAACTGCTAGTCCACAAGATTCTCAAGTGTTATTGTTCAATATATTTAAAAAGGGGTCATCTGATATCTTAACTGAAGGAACAACACTAACTCGTCTAATGCATCGAGCTCAAGGGCGGGCAGAATTTCATATGGTTATGTCATTATTAGTAGTACTGAAAAAGTTTTTTCAAATTTCTGATGATCTTGTATCTGTACTTCA-GGGTATTGATAATGTAATAATTGATTTTAATCAATTAGTTCTTCGTTTATTAAGTCAAAGTAAAATAACACTAGAAACTTATGTACAATTTTTGCAACAAGTTACAGAAAAATCCAGTTCAAATAGTAATGTTGTACCTGAAGATGGAACAATACATGAACTTACAACTAATGCATTGATGTATTTAGAAAACTTGTTAGAATTCGCTGATATTATTGGTACTACTTTGTCATTTACTGAAGCTGNGCCACAAGCTACTACTAACACACTTANATATCTTACCACTATTGGCCANAATCATGCCTT]

[+] EMBL CD187022             [CTTTTTTTTATTAAGACAAACTTTCTGTCCAATGGATGATGCTACTTTAATAAGATTGATGGATCAAGAAGTCTCTGACAAAGAATCAGGAGATGGTTCAATAACTGAAGATACAGAACAAATGGAGGATATTCCAAATAATATGTTGAATAGTTTACGTTTTCTTGCTAAATGGATGAGTGAAAATCAATCATTTGTAAACAAACCACAAAGTATATCACGAGGATGTTTGGCAAAATATTGTGAATGTCGTCGTGAACTTATCCGTCTAAATTTAGTAAGAGTACGAGAATTATTAAGAAAAGCTGAAAATCCATCATCATCATCTGGCACAGTATCTAAACCAGGATTTCTGCCGCCAAACGTACGTGGTCGCACTAAACGCCTCCCTGGATTCGTTTGGGATATAAGTGCTGTTCGACTTATCAATGAAACAGAAACCGATGAACTTGATTCTGAACATTATGCTATCGCTCTGGGTGTTCTCGTTAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CD191625             [                                                                                                                                                                                      AAAATCAATCATTTGTAAACAAACCACAAAGTATATCACAAGGATGTTTGGCAAAATATTGTGAATGTCGTCGTGAACTTATCCGTCTAAATTTAGTAAGAGTACGAGAATTATTAAGAAAAGCTGAAAATCCATCATCATCATCTGGCACAGTATCTAAACCAGGATTTCTGCCGCCAAACGTACGTGGTCGCACTAAACGCCTCCCTGGATTCGTTTGGGATATAAGTGCTGTTCGACTTATCAATGAAACAGAAACCGATGAACTTGATTCTGAACATTATGCTATCGCTCTGGGTGTTCTCGTTAAATTAATGCAAAATGAATGTATTTTGTTGGATCGTTTACAGTTAACTGCTAGTCCACAAGATTCTCAAGTGTTATTGTTCAATATATTTAAAAAGGGGTCATCTGATATCTTAACTGAAGGAACAACACTAACTCGTCTAATGCATCGAGCTCAAGGGCGGGCAGAATTTCATATGGTTATGTCATTATTAGTAGTACTGAAAAAGTTTTTTCAAATTTCTGATGATCTTGTATCTGTACTTCAGGGGTATTGAT ATGTAATAATTGATTTTA                                                                                                                                                                                                                                                                                     ]
[+] EMBL CD140075             [                                                                                                                                                                                                                                                                                                                                                                                                                    ATGTAAGTGCTGTTCGACTTATCAATGAAACAGAAACCGATGAACTTGATTCTGAACATTATGCTATCGCTCTGGGTGTTCTCGTTAAATTAATGCAAAATGAATGTATTTTGTTGGATCGTTTACAGTTAACTGCTAGTCCACAAGATTCTCAAGTGTTATTGTTCAATATATTTAAAAAGGGGTCATCTGATATCTTAACTGAAGGAACAACACTAACTCGTCTAATGCATCGAGCTCAAGGGCGGGCAGAATTTCATATGGTTATGTCATTATTAGTAGTACTGAAAAAGTTTTTTCAAATTTCTGATGATCTTGTATCTGTACTTCA GGGCATTGATAATGTAATAATTGATTTTAATCAATTAGTTCTTCGTTTATTAAGTCAAAGTAAAATAACACTAGAAACTTATGTACAATTT                                                                                                                                                                                                                       ]
[+] EMBL CD154083             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GCTATCGCTCTGGGTGTTCTCGTTAAATTAATGCAAAATGAATGTATTTTGTTGGATCGTTTACAGTTAACTGCTAGTCCACAAGATTCTCAAGTGTTATTGTTCAATATATTTAAAAAGGGGTCATCTGATATCTTAACTGAAGGAACAACACTAACTCGTCTAATGCATCGAGCTCAAGGGCGGGCAGAATTTCATATGGTTATGTCATTATTAGTAGTACTGAAAAAGTTTTTTCAAATTTCTGATGATCTTGTATCTGTACTTCA GGGTATTGATAATGTAATAATTGATTTTAATCAATTAGTTCTTCGTTTATTAAGTCAAAGTAAAATAACACTAGAAACTTATGTACAATTTTTGCAACAAGTTACAGAAAAATCCAGTTCAAATAGTAATGTTGTACCTGAAGATGGAACAATACATGAACTTACAACTAATGCATTGATGTATTTAGAAAACTTGTTAGAATTCGCTGATATTATTGGTACTACTTTGTCATTTACTGAAGCTGNGCCACAAGCTACTACTAACACACTTANATATCTTACCACTATTGGCCANAATCATGCCTT]




>consensus_7215#0
CTTTTTTTTATTAAGACAAACTTTCTGTCCAATGGATGATGCTACTTTAATAAGATTGAT
GGATCAAGAAGTCTCTGACAAAGAATCAGGAGATGGTTCAATAACTGAAGATACAGAACA
AATGGAGGATATTCCAAATAATATGTTGAATAGTTTACGTTTTCTTGCTAAATGGATGAG
TGAAAATCAATCATTTGTAAACAAACCACAAAGTATATCACGAGGATGTTTGGCAAAATA
TTGTGAATGTCGTCGTGAACTTATCCGTCTAAATTTAGTAAGAGTACGAGAATTATTAAG
AAAAGCTGAAAATCCATCATCATCATCTGGCACAGTATCTAAACCAGGATTTCTGCCGCC
AAACGTACGTGGTCGCACTAAACGCCTCCCTGGATTCGTTTGGGATATAAGTGCTGTTCG
ACTTATCAATGAAACAGAAACCGATGAACTTGATTCTGAACATTATGCTATCGCTCTGGG
TGTTCTCGTTAAATTAATGCAAAATGAATGTATTTTGTTGGATCGTTTACAGTTAACTGC
TAGTCCACAAGATTCTCAAGTGTTATTGTTCAATATATTTAAAAAGGGGTCATCTGATAT
CTTAACTGAAGGAACAACACTAACTCGTCTAATGCATCGAGCTCAAGGGCGGGCAGAATT
TCATATGGTTATGTCATTATTAGTAGTACTGAAAAAGTTTTTTCAAATTTCTGATGATCT
TGTATCTGTACTTCAGGGTATTGATAATGTAATAATTGATTTTAATCAATTAGTTCTTCG
TTTATTAAGTCAAAGTAAAATAACACTAGAAACTTATGTACAATTTTTGCAACAAGTTAC
AGAAAAATCCAGTTCAAATAGTAATGTTGTACCTGAAGATGGAACAATACATGAACTTAC
AACTAATGCATTGATGTATTTAGAAAACTTGTTAGAATTCGCTGATATTATTGGTACTAC
TTTGTCATTTACTGAAGCTGNGCCACAAGCTACTACTAACACACTTANATATCTTACCAC
TATTGGCCANAATCATGCCTT

consensusID : consensus_7215#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 299
fasta sequence

                              [GCACAGTTATCTACACCACCGATTTCTGACGCCGAACGTACGTGGTCGCTCTAGACTCCTCCCTGGATTCGTTTGGGATATAATTGCTGAGCGACTTATCAATGAAATAGATACCGAGTAAACTTGATTCTGAACATTATGCTATCTGCGCTGTGTGTTCTCGCTTAAATTAATGCTGAAGTGAATAGTATTTTGTTGGATCGTTTACAGTTAACTGCTAGTCCACAAGATTCTCAAGTGTTATTGTTCAATATATTTAAAAAGGGGTCATCTGATATCTTAACTGAAGGAACAACACT]

[+] EMBL CD114730             [GCACAGTTATCTACACCACCGATTTCTGACGCCGAACGTACGTGGTCGCTCTAGACTCCTCCCTGGATTCGTTTGGGATATAATTGCTGAGCGACTTATCAATGAAATAGATACCGAGTAAACTTGATTCTGAACATTATGCTATCTGCGCTGTGTGTTCTCGCTTAAATTAATGCTGAAGTGAATAGTATTTTGTTGGATCGTTTACAGTTAACTGCTAGTCCACAAGATTCTCAAGTGTTATTGTTCAATATATTTAAAAAGGGGTCATCTGATATCTTAACTGAAGGAACAACACT]




>consensus_7215#1
GCACAGTTATCTACACCACCGATTTCTGACGCCGAACGTACGTGGTCGCTCTAGACTCCT
CCCTGGATTCGTTTGGGATATAATTGCTGAGCGACTTATCAATGAAATAGATACCGAGTA
AACTTGATTCTGAACATTATGCTATCTGCGCTGTGTGTTCTCGCTTAAATTAATGCTGAA
GTGAATAGTATTTTGTTGGATCGTTTACAGTTAACTGCTAGTCCACAAGATTCTCAAGTG
TTATTGTTCAATATATTTAAAAAGGGGTCATCTGATATCTTAACTGAAGGAACAACACT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7215#0      CTTTTTTTTATTAAGACAAACTTTCTGTCCAATGGATGATGCTACTTTAATAAGATTGAT 60
consensus_7215#1      ------------------------------------------------------------
                                                                                  

consensus_7215#0      GGATCAAGAAGTCTCTGACAAAGAATCAGGAGATGGTTCAATAACTGAAGATACAGAACA 120
consensus_7215#1      ------------------------------------------------------------
                                                                                  

consensus_7215#0      AATGGAGGATATTCCAAATAATATGTTGAATAGTTTACGTTTTCTTGCTAAATGGATGAG 180
consensus_7215#1      ------------------------------------------------------------
                                                                                  

consensus_7215#0      TGAAAATCAATCATTTGTAAACAAACCACAAAGTATATCACGAGGATGTTTGGCAAAATA 240
consensus_7215#1      ------------------------------------------------------------
                                                                                  

consensus_7215#0      TTGTGAATGTCGTCGTGAACTTATCCGTCTAAATTTAGTAAGAGTACGAGAATTATTAAG 300
consensus_7215#1      ------------------------------------------------------------
                                                                                  

consensus_7215#0      AAAAGCTGAAAATCCATCATCATCATCTGGCACAGT-ATCTAAACCAG-GATTTCTGCCG 358
consensus_7215#1      -----------------------------GCACAGTTATCTACACCACCGATTTCTGACG 31
                                                   ******* ***** ****  ******** **

consensus_7215#0      CCAAACGTACGTGGTCGCACTAAACGCCTCCCTGGATTCGTTTGGGATATAAGTGCTGTT 418
consensus_7215#1      CCGAACGTACGTGGTCGCTCTAGACTCCTCCCTGGATTCGTTTGGGATATAATTGCTGAG 91
                      ** *************** *** ** ************************** *****  

consensus_7215#0      CGACTTATCAATGAAACAGAAACCGA-TGAACTTGATTCTGAACATTATGCTATC-GCTC 476
consensus_7215#1      CGACTTATCAATGAAATAGATACCGAGTAAACTTGATTCTGAACATTATGCTATCTGCGC 151
                      **************** *** ***** * ************************** ** *

consensus_7215#0      TGGGTGTTCTCG-TTAAATTAATGC-AAAATGAAT-GTATTTTGTTGGATCGTTTACAGT 533
consensus_7215#1      TGTGTGTTCTCGCTTAAATTAATGCTGAAGTGAATAGTATTTTGTTGGATCGTTTACAGT 211
                      ** ********* ************  ** ***** ************************

consensus_7215#0      TAACTGCTAGTCCACAAGATTCTCAAGTGTTATTGTTCAATATATTTAAAAAGGGGTCAT 593
consensus_7215#1      TAACTGCTAGTCCACAAGATTCTCAAGTGTTATTGTTCAATATATTTAAAAAGGGGTCAT 271
                      ************************************************************

consensus_7215#0      CTGATATCTTAACTGAAGGAACAACACTAACTCGTCTAATGCATCGAGCTCAAGGGCGGG 653
consensus_7215#1      CTGATATCTTAACTGAAGGAACAACACT-------------------------------- 299
                      ****************************                                

consensus_7215#0      CAGAATTTCATATGGTTATGTCATTATTAGTAGTACTGAAAAAGTTTTTTCAAATTTCTG 713
consensus_7215#1      ------------------------------------------------------------
                                                                                  

consensus_7215#0      ATGATCTTGTATCTGTACTTCAGGGTATTGATAATGTAATAATTGATTTTAATCAATTAG 773
consensus_7215#1      ------------------------------------------------------------
                                                                                  

consensus_7215#0      TTCTTCGTTTATTAAGTCAAAGTAAAATAACACTAGAAACTTATGTACAATTTTTGCAAC 833
consensus_7215#1      ------------------------------------------------------------
                                                                                  

consensus_7215#0      AAGTTACAGAAAAATCCAGTTCAAATAGTAATGTTGTACCTGAAGATGGAACAATACATG 893
consensus_7215#1      ------------------------------------------------------------
                                                                                  

consensus_7215#0      AACTTACAACTAATGCATTGATGTATTTAGAAAACTTGTTAGAATTCGCTGATATTATTG 953
consensus_7215#1      ------------------------------------------------------------
                                                                                  

consensus_7215#0      GTACTACTTTGTCATTTACTGAAGCTGNGCCACAAGCTACTACTAACACACTTANATATC 1013
consensus_7215#1      ------------------------------------------------------------
                                                                                  

consensus_7215#0      TTACCACTATTGGCCANAATCATGCCTT 1041
consensus_7215#1      ----------------------------