cluster # 7221

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Schistosoma mansoni
cluster # 7221 cluster # 7221 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7221#0 length = 649 sequences # 2

consensus_7221#1 length = 585 sequences # 3

consensusID : consensus_7221#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 649
fasta sequence

                              [CAGCACGGCACCCTCATATGTTCGCAGGAACACCAACTGCCACCCCTACACCAACTCCTGAACAAACCTCTCAGTTCCAGGGATGTAATAAAATCGCTAGTGATAGTGATAATTCTTTAAATCAAGCGCCTTGGTTTCAAGCTATGCTACCCAGAGAAATAGCATTTGAATTGCTCGCTAAAGAAGAGGTTGGCAGTTTTTTAGTTCGCAACAGTGCTACTCATCCTGGTTGTTGTGCTTTATCTGTTCGAGTGCCAAATAAGGATAATCCGATAGGAATAACCCATTACTTGATACAGAAAACGAATCGAGGCGTTCGATTAAAGGGTTTGGACAAGGAATGGCCATCCCTACAAGCTCTTGTTACCCATTTGACTGTCATTCCAGAGATGCTTCCATGCCCTCTCAAGCTTCCACAATATACTACTAATCCAATCTCTACACAGTCCGATCTGCAGTTGACAAATGGCCCATCAAACGAAATTCCCAAGCAACAGCGTAACTATAACATCAGATCATCACAAACAGAAGCGGGTGAAAATAATCGTGTCACTAATTCAGACTTATCTAGTCACCATCCCCAGCGTATACTTCATTCAGTCGCAGATCTTCCTTGTAGACCAGTCCTACCATCATGTGCTACCATTTC]

[+] EMBL CD061020             [CAGCACGGCACCCTCATATGTTCGCAGGAACACCAACTGCCACCCCTACACCAACTCCTGAACAAACCTCTCAGTTCCAGGGATGTAATAAAATCGCTAGTGATAGTGATAATTCTTTAAATCAAGCGCCTTGGTTTCAAGCTATGCTACCCAGAGAAATAGCATTTGAATTGCTCGCTAAAGAAGAGGTTGGCAGTTTTTTAGTTCGCAACAGTGCTACTCATCCTGGTTGTTGTGCTTTATCTGTTCGAGTGCCAAATAAGGATAATCCGATAGGAATAACCCATTACTTGATACAGAAAACGAATCGAGGCGTTCGATTAAAGGGTTTGGACAAGGAATGGCCATCCCTACAAGCTCTTGTTACCCATTTGACTGTCATTCCAGAGATGCTTCCATGCCCTCTCAAGCTTCCACAATATACTACTAATCCAATCTCTACACAGTCCGATCTGCAGTTGACAAATGGCCCATCAAACGAAATTCCCAAGCAACAGCGTAACTATAACATCAGATCATCACAAACAGAAGCGGGTGAAAATAATCGTGTCACTAATTCAGACTTATCTAGTCACCATCCCCAGCGTATACTTCATTCAGTCGCAGATCTTCCTTGTAGACCAGTCCTACCATCATGTGCTACCATTTC]
[+] EMBL CD060978             [gAGCTCGGCACCCTCATATGTTCGCAGGAACACCAACTGCCACCCCTACACCAACTCCTGAACAAACCTCTCAGTTCCAGGGATGTAATAAAATCGCTAGTGATAGTGATAATTCTTTAAATCAAGCGCCTTGGTTTCAAGCTATGCTACCCAGAGAAATAGCATTTGAATTGCTCGCTAAAGAAGAGGTTGGCAGTTTTTTAGTTCGCAACAGTGCTACTCATCCTGGTTGTTGTGCTTTATCTGTTCGAGTGCCAAATAAGGATAATCCGATAGGAATAACCCATTACTTGATACAGAAAACGAATCGAGGCGTTCGATTAAAGGGTTTGGACAAGGAATGGCCATCCCTACAAGCTCTTGTTACCCATTTGACTGTCATTCCAGAGATGCTTCCATGCCCTCTCAAGCTTCCACAATATACTACTAATCCAATCTCTACACAGTCCGATCTGCAGTTGACAAATGGCCCATCAAACGAAATTCCCAAGCAACAGCGTAACTATAACATCAGATCATCACAAACAGAAGCGGGTGAAAATAATCGTGTCACTAATTCAGACTTATCTAGTCACCATCCCCAGCGTATACTTCATTCAGTCGCAGATCTTCCTTGTAGACCAGTCCTACCATCATGTGCTACCATTTC]




>consensus_7221#0
CAGCACGGCACCCTCATATGTTCGCAGGAACACCAACTGCCACCCCTACACCAACTCCTG
AACAAACCTCTCAGTTCCAGGGATGTAATAAAATCGCTAGTGATAGTGATAATTCTTTAA
ATCAAGCGCCTTGGTTTCAAGCTATGCTACCCAGAGAAATAGCATTTGAATTGCTCGCTA
AAGAAGAGGTTGGCAGTTTTTTAGTTCGCAACAGTGCTACTCATCCTGGTTGTTGTGCTT
TATCTGTTCGAGTGCCAAATAAGGATAATCCGATAGGAATAACCCATTACTTGATACAGA
AAACGAATCGAGGCGTTCGATTAAAGGGTTTGGACAAGGAATGGCCATCCCTACAAGCTC
TTGTTACCCATTTGACTGTCATTCCAGAGATGCTTCCATGCCCTCTCAAGCTTCCACAAT
ATACTACTAATCCAATCTCTACACAGTCCGATCTGCAGTTGACAAATGGCCCATCAAACG
AAATTCCCAAGCAACAGCGTAACTATAACATCAGATCATCACAAACAGAAGCGGGTGAAA
ATAATCGTGTCACTAATTCAGACTTATCTAGTCACCATCCCCAGCGTATACTTCATTCAG
TCGCAGATCTTCCTTGTAGACCAGTCCTACCATCATGTGCTACCATTTC

consensusID : consensus_7221#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 585
fasta sequence

                              [CGACGTCATCACTTTCAACAGATACTCCAACACCAACTGCCACCCCTACACCAACTCCTGAACAAACCTCTCAGTTCCAGGGATGTAATAAAATCGCTAGTGATAGTGATAATTCTTTAAATCAAGCGCCTTGGTTTCAAGCTATGCTACCCAGAGAAATAGCATTTGAATTGCTCGCTAAAGAAGAGGTTGGCAGTTTTTTAGTTCGCAACAGTGCTACTCATCCTGGTTGTTGTGCTTTATCTGTTCGAGTGCCAAATAAGGATAATCCGATAGGAATAACCCATTACTTGATACAGAAAACGAATCGAGGCGTTCGATTAAAGGGTTTGGACAAGGAATGGCCATCCCTACAAGCTCTTGTTACCCATTTGACTGTCATTCCAGAGATGCTTCCATGCCCTCTCAAGCTTCCACAATATACTACTAATCCAATCTTTACACAGTCCGATCTGCAGTTGACAAATGGCCCATCAAACGAAATTCCCAAGCAACAGCGTAACTATAACATCAGATCATCACAAACAGAAGCGGGTGAAAATAATCGTGTTACTAATTCAGACTTATCTAGTCACCATCCCCAGC]

[+] EMBL CD181953             [CGACGTCATCACTTTCAACAGATACTCCAACACCAACTGCCACCCCTACACCAACTCCTGAACAAACCTCTCAGTTCCAGGGATGTAATAAAATCGCTAGTGATAGTGATAATTCTTTAAATCAAGCGCCTTGGTTTCAAGCTATGCTACCCAGAGAAATAGCATTTGAATTGCTCGCTAAA                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CD124935             [ GACGTCATCACTTTCAACAGATACTCCAACACCAACTGCCACCCCTACACCAACTCCTGAACAAACCTCTCAGTTCCAGGGATGTAATANAATCGCTAGTGATAGTGATAATTCTTTAAATCAAGCGCCTTGGTTTCAAGCTATGCTACCCAGAGAAATAGCATTTGAATTGCTCGCTAAAGAAGAGGTTGGCAGTTTTTTAGTTCGCAACAGTGCTACTCATCCTGGTTGTTGTGCTTTATCTGTTCGAGTGCCAAATAAGGATAATCCGATAGGAATAACCCATTACTTGATACAGAAAACGAATCGAGGCGTTCGATTAAAGGGTTTGGACAAGGAATGGCCATCCCTACAAGCTCTTGTTACCCATTTGACTGTCATTCCAGAGATGCTTCCATGCCCTCTCAAGCTTCCACAATATACTACTAATCCAATCTTTACACAGTCCGATCTGCAGTTGACAAATGGCCCATCAAACGAAATTCCCAAGCAACAGCGTAACTATAACATCAGATCATCACAAACAGAAGCGGGTGAAAATAATCGTGTTACTAATTCAGACTTATCTAGTCACCATCCCCAGC]
[+] EMBL CD139059             [                                                    AACTCCTGAACAAACCTCTCAGTTCCAGGGATGTAATAAAATCGCTAGTGATAGTGATAATTCTTTAAATCAAGCGCCTTGGTTTCAAGCTATGCTACCCAGAGAAATAGCACTTGAATTGCTCGCTAAAGAAGAGGTTGGCAGTTTTTTAGTTCGCAACAGTGCTACTCATCCTGGTTGTTGTGCTTTATCTGTTCGAGTGCCAAATAAGGATAATCCGATAGGAATAACCCATTACTTGATACAGAAAACGAATCGAGGCGTTCGATTAAAGGGTTTGGACAAGGAATGGCCATCCCTACAAGCTCTTGTTACCCATTTGACTGTCATTCCAGAGATGCTTCCATGCCCTCTCAAGCTTCCACAATATACTACTAATCCAATCTTTACACAGTCCGATCTGCAGTTGACAAATGGACCATCAAACG                                                                                                         ]




>consensus_7221#1
CGACGTCATCACTTTCAACAGATACTCCAACACCAACTGCCACCCCTACACCAACTCCTG
AACAAACCTCTCAGTTCCAGGGATGTAATAAAATCGCTAGTGATAGTGATAATTCTTTAA
ATCAAGCGCCTTGGTTTCAAGCTATGCTACCCAGAGAAATAGCATTTGAATTGCTCGCTA
AAGAAGAGGTTGGCAGTTTTTTAGTTCGCAACAGTGCTACTCATCCTGGTTGTTGTGCTT
TATCTGTTCGAGTGCCAAATAAGGATAATCCGATAGGAATAACCCATTACTTGATACAGA
AAACGAATCGAGGCGTTCGATTAAAGGGTTTGGACAAGGAATGGCCATCCCTACAAGCTC
TTGTTACCCATTTGACTGTCATTCCAGAGATGCTTCCATGCCCTCTCAAGCTTCCACAAT
ATACTACTAATCCAATCTTTACACAGTCCGATCTGCAGTTGACAAATGGCCCATCAAACG
AAATTCCCAAGCAACAGCGTAACTATAACATCAGATCATCACAAACAGAAGCGGGTGAAA
ATAATCGTGTTACTAATTCAGACTTATCTAGTCACCATCCCCAGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7221#0      CAGCA-CGGCACCCTCATATGTTCGCAGGAACACCAACTGCCACCCCTACACCAACTCCT 59
consensus_7221#1      CGACGTCATCACTTTCA-ACAGATACTCCAACACCAACTGCCACCCCTACACCAACTCCT 59
                      *  *  *  ***  *** *      *   *******************************

consensus_7221#0      GAACAAACCTCTCAGTTCCAGGGATGTAATAAAATCGCTAGTGATAGTGATAATTCTTTA 119
consensus_7221#1      GAACAAACCTCTCAGTTCCAGGGATGTAATAAAATCGCTAGTGATAGTGATAATTCTTTA 119
                      ************************************************************

consensus_7221#0      AATCAAGCGCCTTGGTTTCAAGCTATGCTACCCAGAGAAATAGCATTTGAATTGCTCGCT 179
consensus_7221#1      AATCAAGCGCCTTGGTTTCAAGCTATGCTACCCAGAGAAATAGCATTTGAATTGCTCGCT 179
                      ************************************************************

consensus_7221#0      AAAGAAGAGGTTGGCAGTTTTTTAGTTCGCAACAGTGCTACTCATCCTGGTTGTTGTGCT 239
consensus_7221#1      AAAGAAGAGGTTGGCAGTTTTTTAGTTCGCAACAGTGCTACTCATCCTGGTTGTTGTGCT 239
                      ************************************************************

consensus_7221#0      TTATCTGTTCGAGTGCCAAATAAGGATAATCCGATAGGAATAACCCATTACTTGATACAG 299
consensus_7221#1      TTATCTGTTCGAGTGCCAAATAAGGATAATCCGATAGGAATAACCCATTACTTGATACAG 299
                      ************************************************************

consensus_7221#0      AAAACGAATCGAGGCGTTCGATTAAAGGGTTTGGACAAGGAATGGCCATCCCTACAAGCT 359
consensus_7221#1      AAAACGAATCGAGGCGTTCGATTAAAGGGTTTGGACAAGGAATGGCCATCCCTACAAGCT 359
                      ************************************************************

consensus_7221#0      CTTGTTACCCATTTGACTGTCATTCCAGAGATGCTTCCATGCCCTCTCAAGCTTCCACAA 419
consensus_7221#1      CTTGTTACCCATTTGACTGTCATTCCAGAGATGCTTCCATGCCCTCTCAAGCTTCCACAA 419
                      ************************************************************

consensus_7221#0      TATACTACTAATCCAATCTCTACACAGTCCGATCTGCAGTTGACAAATGGCCCATCAAAC 479
consensus_7221#1      TATACTACTAATCCAATCTTTACACAGTCCGATCTGCAGTTGACAAATGGCCCATCAAAC 479
                      ******************* ****************************************

consensus_7221#0      GAAATTCCCAAGCAACAGCGTAACTATAACATCAGATCATCACAAACAGAAGCGGGTGAA 539
consensus_7221#1      GAAATTCCCAAGCAACAGCGTAACTATAACATCAGATCATCACAAACAGAAGCGGGTGAA 539
                      ************************************************************

consensus_7221#0      AATAATCGTGTCACTAATTCAGACTTATCTAGTCACCATCCCCAGCGTATACTTCATTCA 599
consensus_7221#1      AATAATCGTGTTACTAATTCAGACTTATCTAGTCACCATCCCCAGC-------------- 585
                      *********** **********************************              

consensus_7221#0      GTCGCAGATCTTCCTTGTAGACCAGTCCTACCATCATGTGCTACCATTTC 649
consensus_7221#1      --------------------------------------------------