These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7224#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1161 fasta sequence [GCCANATCTTGGCACGAGGGTCTACACGTTATCATGTAATAATGGATCGTGTATTGGTCGAAGTGTTTTGGAAAATTCAGTAACTAACAGTAATGATATCAACAATTTCAATTATGGATTAAAAAACTTTAAAAATAAAGCAGATTATCAGACACGGACTACTTCGGGGAAAGAACAAAAATCTGTCCACTGGTCTGAAGATTTAGATACTTCAAATTCAAATCGAAAACAGTTGACCAGTGATATTGCTACACTAAACAATAATAATAAAATTATTCCAACAAATTTTGACAGTATCAATACTACAATTCCTACTACAACTACTAATAATATTGATAGCGTAACAAGTAATGTTAATAATAACCTTGTTAATAGTTATGGAACTGGTTATCCTCAATTTAGAAGACAACAATTATCAGTACGTGATGTGTCCAACGATAATGTTACAAAAGCTTATTCATGTTCAAAAAATATCGAAGAATTTCTTAGGAGAAGATCGTTATCCTCTAATCCAGCAAATGCATCCAATCAGATGATTAGAAGCCAGAGTTTATATGCTTACCTTTCTATGCGTAATGAATCGGCAAATAATGTGGCTAAAACTAGCGCANACGCATTGGCCAATACGACATTTTCAATAAAACCAGACAACAGCCGTAATATAGTTGACGTACAACCAAAGCTACCTCTCANACAGATGGCTGTTACTACTTCTANCACTCCCAATAATAATAGTAACCATAGACAAAGTGATAATTATTCCGAATATTCTATCGCTCGAAGATCAGTTTGTTCCTCTGTGTACGGAGCAGAGAGCTCTATTTCTCCAAATTTATCCACAGAGCTTCATCTATCTTCTAATAGAAGAAGTATATCACCAAGTTTTCAAAGATTTTCAAATCAATCGGAAACTGACGGAGTTGTAGACAAACATCAGTCTAACAAAACAAATCTCACTGTACAAATCTTTCTGCCGGATAGAACTAGTATACATATCCCAGTTCATAGTACGACTACTACATTACAAGCTTTACAAAAGTTATGTAGTACCAATCAAAAACTTCTTACAATGAAACATGCTTTGGTTGAAAGAATTCCGGTTTTACACTTAGAACGTTGTCTAGAAGATGATGAATATTTATTCAATTATTTATCAAGTTG] [+] EMBL CD080711 [GCCANATCTTGGCACGAGGGTCTACACGTTATCATGTAATAATGGATCGTGTATTGGTCGAAGTGTTTTGGAAAATTCAGTAACTAACAGTAATGATATCAACAATTTCAATTATGGATTAAAAAACTTTAAAAATAAAGCAGATTATCAGACACGGACTACTTCGGGGAAAGAACAAAAATCTGTCCACTGGTCTGAAGATTTAGATACTTCAAATTCAAATCGAAAACAGTTGACCAGTGATATTGCTACACTAAACAATAATAATAAAATTATTCCAACAAATTTTGACAGTATCAATACTACAATTCCTACTACAACTACTAATAATATTGATAGCGTAACAAGTAATGTTAATAATAACCTTGTTAATAGTTATGGAACTGGTTATCCTCAATTTAGAAGACAACAATTATCAGTACGTGATGTGTCCAACGATAATGTTACAAAAGCTTATTCATGTTCAAAAAATATCGAAGAATTTCTTAGGAGAAGATCGTTATCCTCTAATCCAGCAAATGCATCCAATCAGATGATTAGAAGCCAGAGTTTATATGCTTACCTTTCTATGCGTAATGAATCGGCAAATAATGTGGCTAAAACTAGCGCANACGCATTGGCCAATACGACATTTTCAATAAAACCAGACAACAGCCGTAATATAGTTGACGTACAACCAAAGCTACCTCTCANACAGATGGCTGTTACTACTTCTANCACTCCCAATAAT ] [-] EMBL CD074636 [ TCCAATCAGATGATTAGAAGCCAGAGTTTATATGCTTACCTTTCTATGCGTAATGAATCGGCAAATAATGTGGCTAAAACTAGCGCAAACGCATTGGCCAATACGACATTTTCAATAAAACCAGACAACAGCCGTAATATAGTTGACGTACAACCAAAGCTACCTCTCAAACAGATGGCTGTTACTACTTCTACAACTCCCAATAATAATAGTAACCATAGACAAAGTGATAATTATTCCGAATATTCTATCGCTCGAAGATCAGTTTGTTCCTCTGTGTACGGAGCAGAGAGCTCTATTTCTCCAAATTTATCCACAGAGCTTCATCTATCTTCTAATAGAAGAAGTATATCACCAAGTTTTCAAAGATTTTCAAATCAATCGGAAACTGACGGAGTTGTAGACAAACATCAGTCTAACAAAACAAATCTCACTGTACAAATCTTTCTGCCGGATAGAACTAGTATACATATCCCAGTTCATAGTACGACTACTACATTACAAGCTTTACAAAAGTTATGTAGTACCAATCAAAAACTTCTTACAATGAAACATGCTTTGGTTGAAAGAATTCCGGTTTTACACTTAGAACGTTGTCTAGAAGATGATGAATATTTATTCAATTATTTATCAAGTTG] consensusID : consensus_7224#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 475 fasta sequence [CCAAACAACAAAAGTTCAGTACAATACAGGTATTCAGCAGAATTAGTAGATGCAACACATCAAAACACAAGGACGGGTTATTCAACACAAAGGGTAGATGACAGCATACGAGGAAATTGTTATTTACCTAGGACAAATTTACCTCATATACAACAAGCTCAACATGATTCCCAACTGAAAAAACCTCAGAAAACAATAAATTTCCTCAATTCTACTGAAGCACGTGATACTAATAATTCCCAAGCTATTGCAGATATTCGGAATAGAAAATATCAAAAACATGAGTATGGTATTCAGTCAAGTAAAGATAATAGAAGCGGTTACACGTTATCATGTAATAATGGATCGTGTATTGGTCGAAGTGTTTTGGAAAATTCAGTAACTAACAGTAATGATATCAACAATTTCAATTATGGATTAAAAAACTTTAAAAATAAAGCAGATTATCAGACACGGACTACTTCGGGGAAAGAAC] [-] EMBL CD180322 [CCAAACAACAAAAGTTCAGTACAATACAGGTATTCAGCAGAATTAGTAGATGCAACACATCAAAACACAAGGACGGGTTATTCAACACAAAGGGTAGATGACAGCATACGAGGAAATTGTTATTTACCTAGGACAAATTTACCTCATATACAACAAGCTCAACATGATTCCCAACTGAAAAAACCTCAGAAAACAATAAATTTCCTCAATTCTACTGAAGCACGTGATACTAATAATTCCCAAGCTATTGCAGATATTCGGAATAGAAAATATCAAAAACATGAGTATGGTATTCAGTCAAGTAAAGATAATAGAAGCGGTTACACGTTATCATGTAATAATGGATCGTGTATTGGTCGAAGTGTTTTGGAAAATTCAGTAACTAACAGTAATGATATCAACAATTTCAATTATGGATTAAAAAACTTTAAAAATAAAGCAGATTATCAGACACGGACTACTTCGGGGAAAGAAC] [-] EMBL CD180459 [ ACAAGGACGGGTTATTCAACACAAAGGGTAGATGACAGTATACAAGGAAATTGTTATTTACCTAGGACAAATTTACCTCATATACAACAAGCTCAACATGATTCCCAACTGAAAAAACCTCAGAAAACAATAAATTTCCTCAATTCCACTGAAGCACGTGATACTAATAATTCCCAAGCTATTGCAGATATTCGGAATAGAAAATATCAAAAACATGAGTATGGTATTCAGTCAAGTAAAGATAATAGAAGCAGTTACACGTTATCATGTAATAATGGATCGTGTATTGGTCGAAGTGTTTTGGAAAATTCAGTAACTAACAGTAATGATATCAACAATTTCAATTATGGATTAAAAAACTTTGAAAATAAAGCAGATTATCAGACACGGACTACTTCGGGGAAA ] consensusID : consensus_7224#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 468 fasta sequence [GTCAAAACGCTGTCAATAATAACAACAGTCAGCCAAACAACAAAAGTTCAGTACAATACAGGTATTCAGCAGAATTAGTAGATGCAACACATCAAAACACAAGGACGGGTTATTCAACACAAAGGGACAAATTTACCTCATATACAACAAGCTCAACATGATTCCCAACTGAAAAAAACCTCAGAAAACAATAAATTTCCTCAATTCCACTGAAGCACGTGATACTAATAATTCCCAAGCTATTGCAGATATTCGGAATAGAAAATATCAAAAACATGAGTATGGTATTCAGTCAAGTAAAGATAATAGAAGCAGTTACACGTTATCATGTAATAATGGATCGTGTATTGGTCGAAGTGTTTCGGAAAATTCAGTAACTAACAGTAATGATATCAACAATTTCAATTATGGATTAAAAAACTTTACAAATACAGCAGATTATCAGACACGGACTACTTCGGGGAAAGA] [+] EMBL CD180343 [GTCAAAACGCTGTCAATAATAACAACAGTCAGCCAAACAACAAAAGTTCAGTACAATACAGGTATTCAGCAGAATTAGTAGATGCAACACATCAAAACACAAGGACGGGTTATTCAACACAAAGGGACAAATTTACCTCATATACAACAAGCTCAACATGATTCCCAACTGAAAAAAACCTCAGAAAACAATAAATTTCCTCAATTCCACTGAAGCACGTGATACTAATAATTCCCAAGCTATTGCAGATATTCGGAATAGAAAATATCAAAAACATGAGTATGGTATTCAGTCAAGTAAAGATAATAGAAGCAGTTACACGTTATCATGTAATAATGGATCGTGTATTGGTCGAAGTGTTTCGGAAAATTCAGTAACTAACAGTAATGATATCAACAATTTCAATTATGGATTAAAAAACTTTACAAATACAGCAGATTATCAGACACGGACTACTTCGGGGAAAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7224#1 ------------------------------------------------------------ consensus_7224#2 ------------------------------------------------------------ consensus_7224#0 GCCANATCTTGGCACGAGGGTCTACACGTTATCATGTAATAATGGATCGTGTATTGGTCG 60 consensus_7224#1 ----------------------------------------------------------CC 2 consensus_7224#2 --------------------------GTCAAAACGCTGTCAATAATAACAACAGTCAGCC 34 consensus_7224#0 AAGTGTTTTGGAAAATTCAGTAACTAACAGTAATGATATCAACAATTTCAATTATGGATT 120 consensus_7224#1 AAACAAC---AAAAGTTCAGTACAATA-CAGGTATTCAGCAGAATTAGTAGATGCAACAC 58 consensus_7224#2 AAACAAC---AAAAGTTCAGTACAATA-CAGGTATTCAGCAGAATTAGTAGATGCAACAC 90 consensus_7224#0 AAAAAACTTTAAAAATAAAGCAGATTATCAGACACGGACTACTTCGGGGAAAGAACAAAA 180 *** *** **** * ** * * ** *** * * * * * * * * consensus_7224#1 ATCAAAACACAAG---GACGGGTTATTCAACACAAAGGGTAGATGACAGCATACGAGGAA 115 consensus_7224#2 ATCAAAACACAAG---GACGGGTTATTCAACACAAAGGG--------------------- 126 consensus_7224#0 ATCTGTCCACTGGTCTGAAGATTTAGATACTTCAAATTCAAATCGAAAACAGTTGACCAG 240 *** *** * ** * *** * **** consensus_7224#1 ATTGTTATTTACCTAGGACAAATTTACCTCATATA---CAACAAGCTCAACATGATTCCC 172 consensus_7224#2 -----------------ACAAATTTACCTCATATA---CAACAAGCTCAACATGATTCCC 166 consensus_7224#0 TGATATTGCTACACTAAACAATAATAATAAAATTATTCCAACAAATTT--TGACAGTATC 298 **** ** * ** ****** * * * * consensus_7224#1 AACTGAAAAAA-CCTCAGAAAACAATAAATTTCCTCAATTCTACTGAAGCACGTGATACT 231 consensus_7224#2 AACTGAAAAAAACCTCAGAAAACAATAAATTTCCTCAATTCCACTGAAGCACGTGATACT 226 consensus_7224#0 AATACTACAATTCCTACTACAACTACTAATAATATTGAT---AGCGTAACAAGTAATGTT 355 ** * ** *** * *** * *** * ** * * * ** ** ** * consensus_7224#1 AATAATTCCCAAGCTA----TTGCAGA------TATTCGGAATAGAAAATATCAAAAACA 281 consensus_7224#2 AATAATTCCCAAGCTA----TTGCAGA------TATTCGGAATAGAAAATATCAAAAACA 276 consensus_7224#0 AATAATAACCTTGTTAATAGTTATGGAACTGGTTATCCTCAATTTAGAAGACAACAATTA 415 ****** ** * ** ** ** *** * *** * ** * * ** * consensus_7224#1 TGAGTATGGTATTCAGTCAAGTAAAGATAATAGAAGCGGTTACACGTTATCATGTAATAA 341 consensus_7224#2 TGAGTATGGTATTCAGTCAAGTAAAGATAATAGAAGCAGTTACACGTTATCATGTAATAA 336 consensus_7224#0 TCAGTACG-TGATGTGTCCAACGATAATGTTACAAAAGCTTATTCATGTTCAAAAAATAT 474 * **** * * * *** * * ** ** ** *** * * *** **** consensus_7224#1 TGGATCGTGTATTGGTCGAAG--TGTT-TTGGAAAATTCAGTAACTAACAGTAATGATAT 398 consensus_7224#2 TGGATCGTGTATTGGTCGAAG--TGTT-TCGGAAAATTCAGTAACTAACAGTAATGATAT 393 consensus_7224#0 CGAAGAATTTCTTAGGAGAAGATCGTTATCCTCTAATCCAGCAAATGCATCCAATCAGAT 534 * * * * ** * **** *** * *** *** ** * *** * ** consensus_7224#1 CAACAATTTCAATTATGGAT-TAAAAAACTTTAAAAATAAAGCAGATTATCAGACACGG- 456 consensus_7224#2 CAACAATTTCAATTATGGAT-TAAAAAACTTTACAAATACAGCAGATTATCAGACACGG- 451 consensus_7224#0 GATTAGAAGCCAGAGTTTATATGCTTACCTTTCTATGCGTAATGAATCGGCAAATAATGT 594 * * * * * ** * * **** * * ** ** * * * consensus_7224#1 -ACTACTTCGGGGAAAGAAC---------------------------------------- 475 consensus_7224#2 -ACTACTTCGGGGAAAGA------------------------------------------ 468 consensus_7224#0 GGCTAAAACTAGCGCANACGCATTGGCCAATACGACATTTTCAATAAAACCAGACAACAG 654 *** * * * * consensus_7224#1 ------------------------------------------------------------ consensus_7224#2 ------------------------------------------------------------ consensus_7224#0 CCGTAATATAGTTGACGTACAACCAAAGCTACCTCTCANACAGATGGCTGTTACTACTTC 714 consensus_7224#1 ------------------------------------------------------------ consensus_7224#2 ------------------------------------------------------------ consensus_7224#0 TANCACTCCCAATAATAATAGTAACCATAGACAAAGTGATAATTATTCCGAATATTCTAT 774 consensus_7224#1 ------------------------------------------------------------ consensus_7224#2 ------------------------------------------------------------ consensus_7224#0 CGCTCGAAGATCAGTTTGTTCCTCTGTGTACGGAGCAGAGAGCTCTATTTCTCCAAATTT 834 consensus_7224#1 ------------------------------------------------------------ consensus_7224#2 ------------------------------------------------------------ consensus_7224#0 ATCCACAGAGCTTCATCTATCTTCTAATAGAAGAAGTATATCACCAAGTTTTCAAAGATT 894 consensus_7224#1 ------------------------------------------------------------ consensus_7224#2 ------------------------------------------------------------ consensus_7224#0 TTCAAATCAATCGGAAACTGACGGAGTTGTAGACAAACATCAGTCTAACAAAACAAATCT 954 consensus_7224#1 ------------------------------------------------------------ consensus_7224#2 ------------------------------------------------------------ consensus_7224#0 CACTGTACAAATCTTTCTGCCGGATAGAACTAGTATACATATCCCAGTTCATAGTACGAC 1014 consensus_7224#1 ------------------------------------------------------------ consensus_7224#2 ------------------------------------------------------------ consensus_7224#0 TACTACATTACAAGCTTTACAAAAGTTATGTAGTACCAATCAAAAACTTCTTACAATGAA 1074 consensus_7224#1 ------------------------------------------------------------ consensus_7224#2 ------------------------------------------------------------ consensus_7224#0 ACATGCTTTGGTTGAAAGAATTCCGGTTTTACACTTAGAACGTTGTCTAGAAGATGATGA 1134 consensus_7224#1 --------------------------- consensus_7224#2 --------------------------- consensus_7224#0 ATATTTATTCAATTATTTATCAAGTTG 1161 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||