cluster # 7226

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 7226 cluster # 7226 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7226#0 length = 564 sequences # 3

consensus_7226#1 length = 477 sequences # 1
consensus_7226#2 length = 269 sequences # 1

consensusID : consensus_7226#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 564
fasta sequence

                              [TCAGCCTTGTGAATTCCGAAGAATCTGGGATTTCATCATGAGGTGTAATAATTATTTCTTAAACACATAGGGGAGAATTTAAATGGTTTGAATTGTTTATTCTAGTTAGCGTTTTTTACCAAGGTTGTTTTCCACGAGATGAAGTTGTCAATCCTACTCCAAAACCTCCAACTTTGACCAGATTTGAGAGCATCAGTAGCCGTAGATAAGCTACAGTTCGAGTTAAACATGTTATGCTCAACAGTTATTTCCA-TTTTTATTTTGTAGTTTGATTGCATTTGCCATAGCACTATTGATTATTCTCGTGAAGAAGATCAGTGAGAAATATCCACTGAATGTCGTGTTTGTAATTATTTATGTAAGAATTTCTAATGATCATTTCACATATATTTGCCTATTTTCTTTCTAAAAATCCAATTTAATAAAACGTACTGCTTGTAGATGGTAATCCAACGTGACTGATTTTTATGTCATAGAAGAGATTTGCGAAATCGGAATACTGACTGGTTTACGGATTAATTTAAATCTTCGATTTGTCGAGATTGATATGTTAGACGTTTCACT]

[+] EMBL AI976557             [TCAGCCTTGTGAATTCCGAAGAATCTGGGATTTCATCATGAGGTGTAATAATTATTTCTTAAACACATAGGGGAGAATTTAAATGGTTTGAATTGTTTATTCTAGTTAGCGTTTTTTACCAAGGTTGTTTTCCACGAGATGAAGTTGTCAATCCTACTCCAAAACCTCCAACTTTGACCAGATTTGAGAGCATCAGTAGCCGTAGATAAGCTACAGTTCGAGTTAAACATGTTATGCTCAACAGTTATTTTCATTTTTTTTTTTGTAGTTTGATTGCATTTGCCATAGCACTATTGATTATTCTCGTGAAGAAGATCAGTGAGAAATATCCACTGAATGTCGTGTTTGTAATTATTTATGTAAGAATTTCTAATGATCATTTCACATATATTTGCCTATTTTCTTTCTAAAAATCCAATTTAATAAAACGTACTGCTTGTAGATGGTAATCCAACGTGACTGATTTTTATGTCATAGAAGAGATTTGCGAAATCGGAATACTGACTGGTTTACGGATTAATTTAAATCTTCGATTTGTCGAGATTGATATGTTAGACGTTTCACT]
[+] EMBL AI976136             [TCAGCCTTGTGAATTCCGAAGAATCTGGGATTTCATCATGAGGTGTAATAATTATTTCTTAAACACATAGGGGAGAATTTAAATGGTTTGAATTGTTTATTCTAGTTAGCGTTTTTTACCAAGGTTGTTTTCCACGAGATGAAGTTGTCAATCCTACTCCAAAACCTCCAACTTTGACCAGATTTGAGAGCATCAGTAGCCGTAGATAAGCTACAGTTCGAGTTAAACATGTTATGCTCAACAGTTATTTCCA TTTTTATTTTGTAGTTTGATTGCATTTGCCATAGCACTATTGATTATTCTCGTGAAGAAGATCAGTGAGAAATATCCACTGAATGTCGTGTTTGTAATTATTTATGTAAGAATTTCTAATGATCATTTCACATATATTTGCCTATTTTCTTTCTAAAAATCCAATTTAATAAAACGTACTGCTTGTAGATGGTAATCCA                                                                                                                ]
[+] EMBL BF936357             [TCAGCCTTGTGAATTCCGAAGAATCTGGGATTTCATCATGAGGTGTAATAATTATTTCTTAAACACATAGGGGAGAATTTAAATGGTTTGAATTGTTTATTCTAGTTAGCGTTTTTTACCAAGGTTGTTTTCCACGAGATGAAGTTGTCAATCCTACTCCAAAACCTCCAACTTTGACCAGATTTGAGAGCATCAGTAGCCGTAGATAAGCTACAGTTCGAGTTAAACATGTTATGCTCAACAGTTATTTCCA TTTTTATTTTGTAGTTTGATTGCATTTGCCATAGCACTATTGATTATTCTCGTGAAGAAGATCAGTGAGAAATATCCACTGAATGTCGTGTTTGTAATTATTTATGTAAGAATTTCTAATGATCATTTCACATATATTTGCCTATTTTCTTTCTAAAAATCCAATTTAATAAAACGTACTGCTTGTAGATGGTAATCCA                                                                                                                ]




>consensus_7226#0
TCAGCCTTGTGAATTCCGAAGAATCTGGGATTTCATCATGAGGTGTAATAATTATTTCTT
AAACACATAGGGGAGAATTTAAATGGTTTGAATTGTTTATTCTAGTTAGCGTTTTTTACC
AAGGTTGTTTTCCACGAGATGAAGTTGTCAATCCTACTCCAAAACCTCCAACTTTGACCA
GATTTGAGAGCATCAGTAGCCGTAGATAAGCTACAGTTCGAGTTAAACATGTTATGCTCA
ACAGTTATTTCCATTTTTATTTTGTAGTTTGATTGCATTTGCCATAGCACTATTGATTAT
TCTCGTGAAGAAGATCAGTGAGAAATATCCACTGAATGTCGTGTTTGTAATTATTTATGT
AAGAATTTCTAATGATCATTTCACATATATTTGCCTATTTTCTTTCTAAAAATCCAATTT
AATAAAACGTACTGCTTGTAGATGGTAATCCAACGTGACTGATTTTTATGTCATAGAAGA
GATTTGCGAAATCGGAATACTGACTGGTTTACGGATTAATTTAAATCTTCGATTTGTCGA
GATTGATATGTTAGACGTTTCACT

consensusID : consensus_7226#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 477
fasta sequence

                              [CCTGAGGCCAGATCGGCACGAGGCTGACTAGGAAGTGAGATCAGTTCATTCAACACTACAGACAAATCTTGGAAGTATGGTTCCTATTGTTGAAAATGCTGAATGGGAAGGAGTCAATGTGATGAAACATGTTGATCGTTTACGTGTTGTATCAACATATACCGAAACAGTGCTTATACTTGTTGTAATACAAATATTAATAACACTTTTCATCATAATGCTCTCGTCAATAATTGGGAATCATTTTCGAGACAATAGCCAACCGATACCGTCCATTGTAGCTGGTTTATTCATTTTGATTGCATTTGTGATAGCAGTACTGGTTGTTCTCGTGAAGAAGATCAGTGAGAAATATCCACTGAATGTCATGTTTGTAATTATTTATTCTATTTTCATGGCAATAGCGATGGCAGTTTGGAGTATAGAGTTATGTATTCTTTACAAACTTGCAATCTTTGGAATCAGTCTGGTGTTGTT]

[+] EMBL CD084069             [CCTGAGGCCAGATCGGCACGAGGCTGACTAGGAAGTGAGATCAGTTCATTCAACACTACAGACAAATCTTGGAAGTATGGTTCCTATTGTTGAAAATGCTGAATGGGAAGGAGTCAATGTGATGAAACATGTTGATCGTTTACGTGTTGTATCAACATATACCGAAACAGTGCTTATACTTGTTGTAATACAAATATTAATAACACTTTTCATCATAATGCTCTCGTCAATAATTGGGAATCATTTTCGAGACAATAGCCAACCGATACCGTCCATTGTAGCTGGTTTATTCATTTTGATTGCATTTGTGATAGCAGTACTGGTTGTTCTCGTGAAGAAGATCAGTGAGAAATATCCACTGAATGTCATGTTTGTAATTATTTATTCTATTTTCATGGCAATAGCGATGGCAGTTTGGAGTATAGAGTTATGTATTCTTTACAAACTTGCAATCTTTGGAATCAGTCTGGTGTTGTT]




>consensus_7226#1
CCTGAGGCCAGATCGGCACGAGGCTGACTAGGAAGTGAGATCAGTTCATTCAACACTACA
GACAAATCTTGGAAGTATGGTTCCTATTGTTGAAAATGCTGAATGGGAAGGAGTCAATGT
GATGAAACATGTTGATCGTTTACGTGTTGTATCAACATATACCGAAACAGTGCTTATACT
TGTTGTAATACAAATATTAATAACACTTTTCATCATAATGCTCTCGTCAATAATTGGGAA
TCATTTTCGAGACAATAGCCAACCGATACCGTCCATTGTAGCTGGTTTATTCATTTTGAT
TGCATTTGTGATAGCAGTACTGGTTGTTCTCGTGAAGAAGATCAGTGAGAAATATCCACT
GAATGTCATGTTTGTAATTATTTATTCTATTTTCATGGCAATAGCGATGGCAGTTTGGAG
TATAGAGTTATGTATTCTTTACAAACTTGCAATCTTTGGAATCAGTCTGGTGTTGTT

consensusID : consensus_7226#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 269
fasta sequence

                              [CCCAATTATTGACGAGAGCATTATGATGAAAAGTGTTATTAATATTTGTATTACAACAAGTATAAGCACTGTTTCGGTATATGTTGATACAACACGTAAACGATCAACATGTTTCATCACATTGACTCTTTCCCATTCAGCATTTTCAACAATAGGAACCATTACTTCCAAGATTTGTGTGTAACGTTGAATGAGCTGGTCTCAGTTCCTAATCAGATTCAAAATAACCACATTCATTATATGGAGTTGTATTGAATACTTTGTTTATG]

[+] EMBL CD189757             [CCCAATTATTGACGAGAGCATTATGATGAAAAGTGTTATTAATATTTGTATTACAACAAGTATAAGCACTGTTTCGGTATATGTTGATACAACACGTAAACGATCAACATGTTTCATCACATTGACTCTTTCCCATTCAGCATTTTCAACAATAGGAACCATTACTTCCAAGATTTGTGTGTAACGTTGAATGAGCTGGTCTCAGTTCCTAATCAGATTCAAAATAACCACATTCATTATATGGAGTTGTATTGAATACTTTGTTTATG]




>consensus_7226#2
CCCAATTATTGACGAGAGCATTATGATGAAAAGTGTTATTAATATTTGTATTACAACAAG
TATAAGCACTGTTTCGGTATATGTTGATACAACACGTAAACGATCAACATGTTTCATCAC
ATTGACTCTTTCCCATTCAGCATTTTCAACAATAGGAACCATTACTTCCAAGATTTGTGT
GTAACGTTGAATGAGCTGGTCTCAGTTCCTAATCAGATTCAAAATAACCACATTCATTAT
ATGGAGTTGTATTGAATACTTTGTTTATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7226#0      -------TCAGCCTTGTG-AATTCCGA--AGAATCTGGGATTTCATCATGAGGTGTAATA 50
consensus_7226#1      CCTGAGGCCAGATCGGCACGAGGCTGACTAGGAAGTGAGATCAGTTCATTCAACACTACA 60
consensus_7226#2      ------------------------------------------------------------
                                                                                  

consensus_7226#0      ATTATTTCTTAAACACATAGG----------GGAGAATTTAAATGGTTTGAATTGTTTAT 100
consensus_7226#1      GACAAATCTTGGAAGTATGGTTCCTATTGTTGAAAATGCTGAATGGGAAGGAGTCAATGT 120
consensus_7226#2      ------------------------------------------------------------
                                                                                  

consensus_7226#0      TCTAGTTAGCGTTTTTTACCAAGGTTGTTTTCCACGAGAT---GAAGTTGTCAATCCTAC 157
consensus_7226#1      GATGAAACATGTTGATCGTTTACGTGTTGTATCAACATATACCGAAACAGTGCTTATACT 180
consensus_7226#2      ------------------------------------------CCCAATTATTGACGAGAG 18
                                                                   *    *         

consensus_7226#0      TCCAAAACCTCCAACTTTGACCAGATTTGAGAGCATCA-GTAGCCGTAGATAAGCTACAG 216
consensus_7226#1      TGTTGTAATACAAATATTAATAACACTTTTCATCATAATGCTCTCGTCAATAA-TTGGGA 239
consensus_7226#2      CATTATGATGAAAAGTGTTATTAATATTTGTATTACAA--CAAGTATAAGCACTGTTTCG 76
                                  **   * *  *   **   *  *  *        *    *   *    

consensus_7226#0      TTCGAGTTAAACATGTTATGCTCAACAGTTATTTCCATTTT---TATTTTGT--AGTTTG 271
consensus_7226#1      ATCATTTTCGAGACAATA-GCCAACCGATACCGTCCATTGTAGCTGGTTTATTCATTTTG 298
consensus_7226#2      GTATATGTTGATACAACACGTAAACGATCAACATGTTTCAT--CACATTGACTCTTTCCC 134
                       *     *  * *    * *   *         *   *  *      **       *   

consensus_7226#0      ATT--GCATTTGCCATAGCACTATTGATTATTCTCGTGAAGAAGATCAGTGAGAAATATC 329
consensus_7226#1      ATT--GCATTTGTGATAGCAGTACTGGTTGTTCTCGTGAAGAAGATCAGTGAGAAATATC 356
consensus_7226#2      ATTCAGCATTTTCAACAATAGGAACCATTACTTCC------AAGATTTGTGTGTAACGT- 187
                      ***  ******   * *  *  *    **  *  *      *****  *** * **  * 

consensus_7226#0      CACTGAATGTCGTGTTTGTAATTATTTATGTAA--------GAATTTCTAATGATCATTT 381
consensus_7226#1      CACTGAATGTCATGTTTGTAATTATTTATTCTATTTTCATGGCAATAGCGATGGCAGTTT 416
consensus_7226#2      ---TGAATGAGCTGGTCTCAGTTCCTAATCAGATT--CAAAATAACCACATTCATTATAT 242
                         ******   ** *   * **  * **   *          *       *     * *

consensus_7226#0      CACATATATTTGCCTATTTTCTTTCTAAAAATCCAATTTAATAAAACGTACTGCTTGTAG 441
consensus_7226#1      GGAGTATAGAGTTATGTATTCTTTACAAACTTGCAATCTTTGGAATCAGTCTGGT-GTTG 475
consensus_7226#2      GGAGTTGTATTGAATACTTTGTTTATG--------------------------------- 269
                          *         *   ** ***                                    

consensus_7226#0      ATGGTAATCCAACGTGACTGATTTTTATGTCATAGAAGAGATTTGCGAAATCGGAATACT 501
consensus_7226#1      TT---------------------------------------------------------- 477
consensus_7226#2      ------------------------------------------------------------
                                                                                  

consensus_7226#0      GACTGGTTTACGGATTAATTTAAATCTTCGATTTGTCGAGATTGATATGTTAGACGTTTC 561
consensus_7226#1      ------------------------------------------------------------
consensus_7226#2      ------------------------------------------------------------
                                                                                  

consensus_7226#0      ACT 564
consensus_7226#1      ---
consensus_7226#2      ---