These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7234#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 991 fasta sequence [TGACCGCTTACATGCTCAACTAACAATTGTTGTTTTATCACGGCTTGGACTGAGTTCACCACACCGGGAACCTCAACAAATAATTCTATCGCCGAATTCCCAATTGAATTTGATTCCTTGGACTGATTTACATTCTGATAGCATTTTACAGTACAAGATTTTAACCGTTCCACATAATAGAAATCTATCGTTAGAACACGCTAGTCAGTTTTTAACTGTCACTCCAGATGGTATTCTGTGTGCGAATGATAAATGTTCAGAGAGTGGATTAGTTTGTCGAGTTACACTTCAAATTCAATCAATGCCTAATGGGAATTTAGTGAATTCAAAGTATACACATACTTTTGACAATCCACTTATTCAGACATTAATTTTGGATGTATTGATTAAAGTGCCACGTTATATGATATTCTCCGTACCTTCTATTACTATTCCACAGAATGAAAGATTGTCAAAAGTAGTGGGACTTCCCGTTGGCGGTCCATACAATATTAAAATCTCGTATCATGATGAGTTAGGGCGTGTATTCGATGCAGTTTCAAATGATTTCTACCGATTGAAAGCATCACTTCATCGATCAGATTTGTTTTCTACCCATTTTATACAAGATTTTATAATTGAACAAAATTTCCCTGTAAATAATATAAACTCATACAACCCGATTCGTCATGCTGCTTTTGGTTTTAGTATACATTCCTTGCCATTTTCTAAGTCAACTAATCAGGTTGAATTCATTCAAGATGAGAAAAATTCTCATTGNGCTGCCTTACGTATTGNGTTATCGAAT-AAATTAATGGTGTATCACCAAGTTATTTAAGTCTACCATATAGTAATTCGTTAGATCTTCTTGGTTTAACATCTTTAATAGAAGGACAATGGATGTGTTTGCCAAAGTTCTCATCATCCACAAGCTATTCAGATTTAGATAATACTTGGTCTTCAGTTGATCCATCGATCATATGGATTGATCCATTAAATCAAATAATTTTAG] [+] EMBL CD096430 [TGACCGCTTACATGCTCAACTAACAATTGTTGTTTTATCACGGCTTGGACTGAGTTCACCACACCGGGAACCTCAACAAATAATTCTATCGCCGAATTCCCAATTGAATTTGATTCCTTGGACTGATTTACATTCTGATAGCATTTTACAGTACAAGATTTTAACCGTTCCACATAATAGAAATCTATCGTTAGAACACGCTAGTCAGTTTTTAACTGTCACTCCAGATGGTATTCTGTGTGCGAATGATAAATGTTCAGAGAGTGGATTAGTTTGTCGAGTTACACTTCAAATTCAATCAATGCCTAATGGGAATTTAGTGAATTCAAAGTATACACATACTTTTGACAATCCACTTATTCAGACATTAATTTTGGATGTATTGATTAAAGTGCCACGTTATATGA ] [+] EMBL CD096424 [ AAATGTTCAGAGAGTGGATTAGTTTGTCGAGTTACACTTCAAATTCAATCAATGCCTAATGGGAATTTAGTGAATTCAAAGTATACACATAATTTTGACAATTCACTTATTCAGACATTAATTTTGGATGTATTGATTAAAGTGCCACGTTATATGATATTCTCCGTACCTTCTATTACTATTCCACAGAATGAAAGATTGTCAAAAGTAGTGGGACTTCCCGTTGGCGGTCCATACAATATTAAAATCTCGTATCATGATGAGTTAGGGCGTGTATTCGATGCAGTTTCAAATGATTTCTACCGATTGAAAGCATCACTTCATCGATCAGATTTGTTTTCTACCCATTTTATACAAGATTTTATAATTGAACAAAATTTCCCTGTAAATAATATAAACTCATACAACCCGATTCGTCATGCTGCTTTTGGTTTTAGTATACATTCCTTGCCATTTTCTAAGTCAACTAATCAGGTTGAATTCATTCAAGATGAGAAAAATTCTCATTGNGCTGCCTTACGTATTGNGTTATCGAAT AAATTAATGG ] [+] EMBL CD126523 [ ATCACTTCATCGATCAGATTTGTTTTCTACCCATTTTATACGAGATTTTATAATTGAACAAAATTTCCCTGTAAATAATATAAACTCATACAACCCGATTCGTCATGCTGCTTTTGGTTTTAGTATACATTCCTTGCCATTTTCTAAGTCAACTAATCAGGTTGAATTCATTCAAGATGAGAAAAATTCTCATTGGGCTGCCTTACGTATTGGGTTATCGAATAAAATTAATGGTGTATCACCAAGTTATTTAAGTCTACCATATAGTAATTCGTTAGATCTTCTTGGTTTAACATCTTTAATAGAAGGACAATGGATGTGTTTGCCAAAGTTCTCATCATCCACAAGCTATTCAGATTTAGATAATACTTGGTCTTCAGTTGATCCATCGATCATATGGATTGATCCATTAAATCAAATAATTTTAG] consensusID : consensus_7234#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 483 fasta sequence [CCATATAAATCATATCATCAACGAAAGGATTTTGAATATGATGGCAATTATAGATCGGCTATAAATGAATATGACCATGATATTAAAAACGAATTATGCGATGATAATTTGGAACAACAACCTAGTTTTTGTAATAATCACCAGTTTGATGAAAGTCGTTACAATTACAATGATAATCTTAATAATTATGATGTAGATGGAATCAATTCATCGGATTTACCCGATCCAGATACTTTACGTGCTTTGAGGAAACGTGATAAAATGATGATGGTTGCAGCAACTGGAATTTATTCACCTATATTCAATGGATCAGGTCAAGCGGGTTACTTTGATGATTTAAATGATGTAGAATATCAGGACGATGATGATGATGAAATAGAAAAACAGTTGATCCATCGATCATATGGATTGATCCATTAAATCAAATAATTTTAGCACGTCATTCCGGTCAAGGAGTATTAACATTTTCTTTAACATCTTCAG] [+] EMBL CD187684 [CCATATAAATCATATCATCAACGAAAGGATTTTGAATATGATGGCAATTATAGATCGGCTATAAATGAATATGACCATGATATTAAAAACGAATTATGCGATGATAATTTGGAACAACAACCTAGTTTTTGTAATAATCACCAGTTTGATGAAAGTCGTTACAATTACAATGATAATCTTAATAATTATGATGTAGATGGAATCAATTCATCGGATTTACCCGATCCAGATACTTTACGTGCTTTGAGGAAACGTGATAAAATGATGATGGTTGCAGCAACTGGAATTTATTCACCTATATTCAATGGATCAGGTCAAGCGGGTTACTTTGATGATTTAAATGATGTAGAATATCAGGACGATGATGATGATGAAATAGAAAAACAGTTGATCCATCGATCATATGGATTGATCCATTAAATCAAATAATTTTAGCACGTCATTCCGGTCAAGGAGTATTAACATTTTCTTTAACATCTTCAG] [+] EMBL CD187726 [CCATATAAATCATATCATCAACGAAAGGATTTTGAATATGATGGCAATTATAGATCGGCTATAAATGAATATGACCATGATATTAAAAACGAATTATGCGATGATAATTTGGAACAACAACCTAGTTTTTGTAATAATCACCAGTTTGATGAAAGTCGTTACAATTACAATGATAATCTTAATAATTATGATGTAGATGGAATCAATTCATCGGATTTACCCGATCCAGATACTTTACGTGCTTTGAGGAAACGTGATAAAATGATGATGGTTGCAGCAACTGGAATTTATTCACCTATATTCAATGGATCAGGTCAAGCGGGTTACTTTGATGATTTAAATGATGTAGAATATCAGGACGATGATGATGATGAAATAGAAAAACAGTTGATCCATCGATCATATGGATTGATCCATTAAATCAAATAATTTTAGCACGTCATTCCGGTCAAGGAGTATTAACATTTTCTTTAACATCTTCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7234#0 TGACCGCTTACATGCTCAACTAACAATTGTTGTTTTATCACGGCTTGGACTGAGTTCACC 60 consensus_7234#1 ------------------------------------------------------------ consensus_7234#0 ACACCGGGAACCTCAACAAATAATTCTATCGCCGAATTCCCAATTGAATTTGATTCCTTG 120 consensus_7234#1 ------------------------------------------------------------ consensus_7234#0 GACTGATTTACATTCTGATAGCATTTTACAGTACAAGATTTTAACCGTTCCACATAATAG 180 consensus_7234#1 ---------CCATATAAATCATATCATCAACGAAAGGATTTTGAATATGATGGCAATTAT 51 *** ** ** * * * * ****** * * * ** consensus_7234#0 AAATCTATCGTTA--GAACACGCTAGTCAGTTTTTAACTGTCACTCCAGATGGTATTCTG 238 consensus_7234#1 AGATCGGCTATAAATGAATATGACCATGATATTAAAAACGAATTATGCGATGATAATTTG 111 * *** * * *** * * * * ** ** * **** ** * ** consensus_7234#0 TGTGCGAATGATAAATGTTCAGAGAGTGGATTAGTTTGTCGAGTTACACTTCAAATTCAA 298 consensus_7234#1 -GAACAACAACCTAGTTTTTGTAATAATCACCAGTTTGATGAAAGTCGTTACAATTACAA 170 * * * * * ** * * ****** ** * * *** * *** consensus_7234#0 TCA-ATGCCTAATGGGAATTTAGTGAATTCAAAGTATACACATACTTTTGACAATCCACT 357 consensus_7234#1 TGATAATCTTAATAATTATGATGTAGATGGAATCAATTCATCGGATTTACCCGATCCAGA 230 * * * * **** ** ** ** ** ** ** *** * ***** consensus_7234#0 TATTCAGACATTAATTTTGGATGTATTGATTAAAGTGCCACGTTATATGATATTCTCCGT 417 consensus_7234#1 TACTT---TACGTGCTTTGAGGAAACGTGATAAAATG---------ATGATGGTTGCAGC 278 ** * * **** * **** ** ***** * * * consensus_7234#0 ACCTTCTATTACTATTCCACAGAATGAAAGATTGTCAAAAGTAGTGGGACTTCCCGTTGG 477 consensus_7234#1 AACTGGAATT--TATTCACCTATATTCAATGG-ATCAGGTCAAGCGGG---TTACTTTGA 332 * ** *** ***** * ** ** *** ** *** * * *** consensus_7234#0 CGGTCCATACAATATTAAAATCTCGTATCATGATGAGTTAGGGCGTGTATTCGATGCAGT 537 consensus_7234#1 TGATTTAAATGATGTAGAA------TATCAGGACGA-TGATGATG---ATGAAATAGAAA 382 * * * * ** * ** ***** ** ** * * * * ** ** * consensus_7234#0 TTCAAATGATTTCTACCGATTGAAAGCATCACTTCATCGA-TCAGATTTGTTTTCTAC-C 595 consensus_7234#1 AACAGTTGAT--CCATCGATCATATGGATTGATCCATTAAATCAAATAATTTTAGCACGT 440 ** **** * * **** * * ** * *** * *** ** *** ** consensus_7234#0 CATTTTATACAAGA--TTTTATAATTGAACAAAATTTCCCTGTAAATAATATAAACTCAT 653 consensus_7234#1 CATTCCGGTCAAGGAGTATTAACATTTTCTTTAACATCTTCAG----------------- 483 **** **** * *** *** ** ** consensus_7234#0 ACAACCCGATTCGTCATGCTGCTTTTGGTTTTAGTATACATTCCTTGCCATTTTCTAAGT 713 consensus_7234#1 ------------------------------------------------------------ consensus_7234#0 CAACTAATCAGGTTGAATTCATTCAAGATGAGAAAAATTCTCATTGNGCTGCCTTACGTA 773 consensus_7234#1 ------------------------------------------------------------ consensus_7234#0 TTGNGTTATCGAATAAATTAATGGTGTATCACCAAGTTATTTAAGTCTACCATATAGTAA 833 consensus_7234#1 ------------------------------------------------------------ consensus_7234#0 TTCGTTAGATCTTCTTGGTTTAACATCTTTAATAGAAGGACAATGGATGTGTTTGCCAAA 893 consensus_7234#1 ------------------------------------------------------------ consensus_7234#0 GTTCTCATCATCCACAAGCTATTCAGATTTAGATAATACTTGGTCTTCAGTTGATCCATC 953 consensus_7234#1 ------------------------------------------------------------ consensus_7234#0 GATCATATGGATTGATCCATTAAATCAAATAATTTTAG 991 consensus_7234#1 -------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||