These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7240#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 994 fasta sequence [ATTGTACCAAAATATAATATTGAATAAAGTCAACCAACCATCTTGTTGAAAATGATTAACGTTACCACCTTGCTGACAATATTATAGGTCAAATAGAATTTAAACCACAGTGTCAAGTATATAGCTTGGACTAGAGTAAATTGTTNTATGCTGAAATATTCTGTGCTAAAGTACCACTGAGAAATATAACTACATAAAAAGACATTACTATCTAGTAATTAAGTAGCAATACAAATACCATTCACA-GAGTAATACTTTAGTAA-TGAAAAAAATTCTAAAAATTAAGTCTGTGATATGGGAATGAACATATGGTGATGAACATACACAGTAGTTATAAGCAAAGTCAGGTTTGGATATAAAAAAATGGAAAAGCCTTAATGTGAGTTATTTATCTACCATAGATCATACATTTAATTCATGACAGTGCATTTCATTAGCTGACTGACCAACGAAGTCTGGAAGAAGACCATTGTTGTCTCTAGTACTAGACAGATTAGGATAGCTCTCCAATAACCAATCTATTATATTTTTATGCTTCCCTCGGTACGCGTGGTGCAAGCAGTTCCTACCACAATTATCACGAGATTCTAGTAGTGGTGCTCCTCCCTTGCCGACGAGCAGTTTTAAAATACCAAGATGTCCCGCATATGCTGCTCGATGTGCAGGTGTAGCCCCGTCATTCTTTGTCTTTGCGAAACTATCAGCCCCAGCTTCTAATAATACTTTGCAAACATCTTCATGATTATTTCTAGCAGCATAATGCAGAGCTGTATACCCATAACTGTCTGGTATGTTAACATTAATATGTTTATTTAATAATTTCCGGACGCGATCAATATCACCACGTGTGGAAGCACCCANATCCCTCTTTCAAATCCATTTCACTTANATCTTGATGANGTGATTGATATAACGCTGTATGATTGGTACATGAATGTGAATTTTCAGTCATTCGCTGCTGAATTCTATCAGTTTTGAAGTAAAGTCTNCATCT] [-] EMBL CD145546 [ATTGTACCAAAATATAATATTGAATAAAGTCAACCAACCATCTTGTTGAAAATGATTAACGTTACCACCTTGCTGACAATATTATAGGTCAAATAGAATTTAAACCACAGTGTCAAGTATATAGCTTGGACTAGAGTAAATTGTTNTATGCTGAAATATTCTGTGCTAAAGTACCACTGAGAAATATAACTACATAAAAAGACATTACTATCTAGTAATTAAGTAGCAATACAAATACCATTCACA GAGTAATACTTTAGTAA TGAAAAAAATTCTAAAAATTAAGTCTGTGATATGGGAATGAACATATGGTGATGAACATACACAGTAGTTATAAGCAAAGTCAGGTTTGGATATAAAAAAATGGAAAAGCCTTAATGTGAGTTATTTATCTACCATAGATCATACATTTAATTCATGACAGTGCATTTCATTAGCTGACTGACCAACGAAGTCTGGAAGAAGACCATTGTTGTCTCTAGTACTAGACAGATTAGGATAGCTCTCCAATAACCAATCTATTATATTTTTATGCTTCCCTCGGTACGCGTGGTGCAAGCAGTTCCTACCACAATTATCACGAGATTCTAGTAG ] [-] EMBL AI390087 [ TACCATTCACAGGAGAGATACTTTAGTAAGTGAAAAAAATACTAAAAATAAAGTCTCTGATATGGGAGTGAACATATGTAGGTGAACATACACAGTAGTTATAAGCAAAGTCAGGTTTGGATATAAAAAAATGGAAAAGCCTTAATGTGAGTTATTTATCTACCATAGATCATACATTTAATTCATGACAGTGCATTTCATTAGCTGACTGACCAACGAAGTCTG GAAGACCATTGTTGTCTCTAGTACTAGACAGATTAGGATAGCTCTCCAATAACCAATCTATTATATTTTTATGCTTCCCTCGGTACGCGTGGTGCAAGCAGTTCCTACCACAATTATCACGAGAT ] [+] EMBL CD145251 [ GTTATTTATCTACCATAGATCATACATTTAATTCATGACAGTGCATTTCATTAGCTGACTGACCAACGAAGTCTGGAAGAAGACCATTGTTGTCTCTAGTACTAGACAGATTAGGATAGCTCTCCAATAACCAATCTATTATATTTTTATGCTTCCCTCGGTACGCGTGGTGCAAGCAGTTCCTACCACAATTATCACGAGATTCTAGTAGTGGTGCTCCTCCCTTGCCGACGAGCAGTTTTAAAATACCAAGATGTCCCGCATATGCTGCTCGATGTGCAGGTGTAGCCCCGTCATTCTTTGTCTTTGCGAAACTATCAGCCCCAGCTTCTAATAATACTTTGCAAACATCTTCATGATTATTTCTAGCAGCATAATGCAGAGCTGTATACCCATAACTGTCTGGTATGTTAACATTAATATGTTTATTTAATAATTTCCGGACGCGATCAATATCACCACGTGTGGAAGCACCCANATCCCTCTTTCAAATCCATTTCACTTANATCTTGATGANGTGATTGATATAACGCTGTATGATTGGTACATGAATGTGAATTTTCAGTCATTCGCTGCTGAATTCTATCAGTTTTGAAGTAAAGTCTNCATCT] [+] EMBL CD181447 [ GAAGTCTGGAAGAAGACCATTGTTGTCTCTAGTACTAGACAGATTAGGATAGCTCTCCAATAACCAATCTATTATATTTTTATGCTTCCCTCGGTACGCGTGGTGCAAGCAGTTCCTACCACAATTATCACGAGATTCTAATAGTGGTGCTCCTCCCTTGCCGACGAGCAGTTTTAAAATACCAAGATGTCCCGCATATGCTGCTCGATGTGCAGGTGTAGCCCCGTCATTCTTTGTCTTTGCGAA ] consensusID : consensus_7240#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 365 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCACAGAGTAATACTTTAGTAATGAAAAAAATTCTAAAAATTAAGTCTGTGATATGGGAATGAACATATGGTGATGAACATACACAGTAGTTATAAGCAAAGTCAGGTTTGGATATAAAAAAATGGAAAAGCCTTAATGTGAGTTATTTATCTACCATAGATCATACATTTAATTCATGACAGTGCATTTCATTAGCTGACTGACCAACGAAGTCTGGAAGAAGACCATTGTTGTCTCTAGTACTAGACAGATTAGGATAGCTCTCCAATAACCAATCTATTATATTTTTATGCTTCCCTCGGTACGCGTGGTGCAAGCAGTTCCCTACACAATTA] [+] EMBL AI395234 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCACAGAGTAATACTTTAGTAATGAAAAAAATTCTAAAAATTAAGTCTGTGATATGGGAATGAACATATGGTGATGAACATACACAGTAGTTATAAGCAAAGTCAGGTTTGGATATAAAAAAATGGAAAAGCCTTAATGTGAGTTATTTATCTACCATAGATCATACATTTAATTCATGACAGTGCATTTCATTAGCTGACTGACCAACGAAGTCTGGAAGAAGACCATTGTTGTCTCTAGTACTAGACAGATTAGGATAGCTCTCCAATAACCAATCTATTATATTTTTATGCTTCCCTCGGTACGCGTGGTGCAAGCAGTTCCCTACACAATTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7240#0 ATTGTACCAAAATATAATATTGAATAAAGTCAACCAACCATCTTGTTGAAAATGATTAAC 60 consensus_7240#1 ------------------------------------------------------------ consensus_7240#0 GTTACCACCTTGCTGACAATATTATAGGTCAAATAGAATTTAAACCACAGTGTCAAGTAT 120 consensus_7240#1 ------------------------------------------------------------ consensus_7240#0 ATAGCTTGGACTAGAGTAAATTGTTNTATGCTGAAATATTCTGTGCTAAAGTACCACTGA 180 consensus_7240#1 ------------------------------------------------------------ consensus_7240#0 GAAATATAACTACATAAAAAGACATTACTATCTAGTAATTAAGTAGCAATACAAATACCA 240 consensus_7240#1 --------------------------------TTTTTTTTTTTTTTTTTTTTTTTTTTTT 28 * * ** * * * consensus_7240#0 TTCACAGAGTAATACTTTAGTAATGAAAAAAATTCTAAAAATTAAGTCTGTGATATGGGA 300 consensus_7240#1 TTCACAGAGTAATACTTTAGTAATGAAAAAAATTCTAAAAATTAAGTCTGTGATATGGGA 88 ************************************************************ consensus_7240#0 ATGAACATATGGTGATGAACATACACAGTAGTTATAAGCAAAGTCAGGTTTGGATATAAA 360 consensus_7240#1 ATGAACATATGGTGATGAACATACACAGTAGTTATAAGCAAAGTCAGGTTTGGATATAAA 148 ************************************************************ consensus_7240#0 AAAATGGAAAAGCCTTAATGTGAGTTATTTATCTACCATAGATCATACATTTAATTCATG 420 consensus_7240#1 AAAATGGAAAAGCCTTAATGTGAGTTATTTATCTACCATAGATCATACATTTAATTCATG 208 ************************************************************ consensus_7240#0 ACAGTGCATTTCATTAGCTGACTGACCAACGAAGTCTGGAAGAAGACCATTGTTGTCTCT 480 consensus_7240#1 ACAGTGCATTTCATTAGCTGACTGACCAACGAAGTCTGGAAGAAGACCATTGTTGTCTCT 268 ************************************************************ consensus_7240#0 AGTACTAGACAGATTAGGATAGCTCTCCAATAACCAATCTATTATATTTTTATGCTTCCC 540 consensus_7240#1 AGTACTAGACAGATTAGGATAGCTCTCCAATAACCAATCTATTATATTTTTATGCTTCCC 328 ************************************************************ consensus_7240#0 TCGGTACGCGTGGTGCAAGCAGTTCCTACCACAATTATCACGAGATTCTAGTAGTGGTGC 600 consensus_7240#1 TCGGTACGCGTGGTGCAAGCAGTTCCCTACACAATTA----------------------- 365 ************************** ******** consensus_7240#0 TCCTCCCTTGCCGACGAGCAGTTTTAAAATACCAAGATGTCCCGCATATGCTGCTCGATG 660 consensus_7240#1 ------------------------------------------------------------ consensus_7240#0 TGCAGGTGTAGCCCCGTCATTCTTTGTCTTTGCGAAACTATCAGCCCCAGCTTCTAATAA 720 consensus_7240#1 ------------------------------------------------------------ consensus_7240#0 TACTTTGCAAACATCTTCATGATTATTTCTAGCAGCATAATGCAGAGCTGTATACCCATA 780 consensus_7240#1 ------------------------------------------------------------ consensus_7240#0 ACTGTCTGGTATGTTAACATTAATATGTTTATTTAATAATTTCCGGACGCGATCAATATC 840 consensus_7240#1 ------------------------------------------------------------ consensus_7240#0 ACCACGTGTGGAAGCACCCANATCCCTCTTTCAAATCCATTTCACTTANATCTTGATGAN 900 consensus_7240#1 ------------------------------------------------------------ consensus_7240#0 GTGATTGATATAACGCTGTATGATTGGTACATGAATGTGAATTTTCAGTCATTCGCTGCT 960 consensus_7240#1 ------------------------------------------------------------ consensus_7240#0 GAATTCTATCAGTTTTGAAGTAAAGTCTNCATCT 994 consensus_7240#1 ---------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||