These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7241#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 786 fasta sequence [CCANAATTCGGCACGAGGCGCAGACCTGAATACAAGATAGTGCCTTTATCTGGGATGATTTCATGTTGGTAAATAATTCAGAATTGTTGAATAATTTAGGTAATTTTGTTAATCGATCTCTTTCTTTTGTGTCACGATTTTTCAATTCGATTATTCCGTCAATAACAAAATTAGAACCAGTTGATACCGAATTCTTGGCCAGAATTAATAAACTCTTCGCTACTTATATACACAATATGGAGTCATGTCATCTTCGAGATGCTATTCGAAATGTATTGACAATTGCTCGTCTTGGTAATGGTTACTTTCAGGCCAATCAACCGTGGGTCGCTGTTAAGAAACCGGAAACAAAAGAACGTTCTGGTGTTGTGATAAGCGTTGCTGCTAATATTGCTTGTCTTCTTGGTGCTATGATTTATCCATTCATGCCTACGATTGGAAAACAGATCTGGATTGAACAGTGCGATCTTCCAATATCCCAAATGAGTTTCGTGCAAATTATTAAAAACGAGTTTACAGTGACGAGGTTGTTACCTGATGGTCATCATATTGGAAAGCCAGTCCCTCTTTTCCGGAAAATAGATACTGATGAAATTAAACGTTTGTCTCAAGTTTATAGTGGTTCATCTGGTGCGTCTGTGACTAATGGAAACGATACAAAGTAAAAAAAATCACTAATGTATGTGTGACTTTTCTGAAAAATCATTTCTTATGACAATTCATTTATCCCAAGTACTTATTNCCAAGTGTTGCTTCCCCACTATGTACTTTATAGAATATATANTC] [+] EMBL CD080850 [CCANAATTCGGCACGAGGCGCAGACCTGAATACAAGATAGTGCCTTTATCTGGGATGATTTCATGTTGGTAAATAATTCAGAATTGTTGAATAATTTAGGTAATTTTGTTAATCGATCTCTTTCTTTTGTGTCACGATTTTTCAATTCGATTATTCCGTCAATAACAAAATTAGAACCAGTTGATACCGAATTCTTGGCCAGAATTAATAAACTCTTCGCTACTTATATACACAATATGGAGTCATGTCATCTTCGAGATGCTATTCGAAATGTATTGACAATTGCTCGTCTTGGTAATGGTTACTTTCAGGCCAATCAACCGTGGGTCGCTGTTAAGAAACCGGAAACAAAAGAACGTTCTGGTGTTGTGATAAGCGTTGCTGCTAATATTGCTTGTCTTCTTGGTGCTATGATTTATCCATTCATGCCTACGATTGGAAAACAGATCTGGATTGAACAGTGCGATCTTCCAATATCCCAAATGAGTTTCGTGCAAATTATTAAAAACGAGTTTACAGTGACGAGGTTGTTACCTGATGGTCATCATATTGGAAAGCCAGTCCCTCTTTTCCGGAAAATAGATACTGATGAAATTAAACGTTTGTCTCAAGTTTATAGTGGTTCATCTGGTGCGTCTGTGACTAATGGAAACGATACAAAGTAAAAAAAATCACTAATGTATGTGTGACTNTTCTG AAAATCATTTCTTATGACAATTCATTTATCCCAAGTACTTATTNCCAAGTGTTGCTTCCCCACTATGTACTTTATAGAATATATANTC] [-] EMBL CD073694 [ AAAATTAGAACCAGTTGATACCGAATTCTTGGCCAGAATTAATAAACTCTTCGCTACTTATATACACAATATGGAGTCATGTCATCTTCGAGATGCTATTCGAAATGTATTGACAATTGCTCGTCTTGGTAATGGTTACTTTCAGGCCAATCAACCGTGGGTCGCTGTTAAGAAACCGGAAACAAAAGAACGTTCTGGTGTTGTGATAAGCGTTGCTGCTAATATTGCTTGTCTTCTTGGTGCTATGATTTATCCATTCATGCCTACGATTGGAAAACAGATCTGGATTGAACAGTGCGATCTTCCAATATCCCAAATGAGTTTCGTGCAAATTATTAAAAACGAGTTTACAGTGACGAGGTTGTTACCTGATGGTCATCATATTGGAAAGCCAGTCCCTCTTTTCCGGAAAATAGATACTGATGAAATTAAACGTTTGTCTCAAGTTTATAGTGGTTCATCTGGTGCGTCTGTGACTAATGGAAACGATACAAAGTAAAAAAAATCACTAATGTATGTGTGACTTTTCTGAAAAATCATTTCTTATGACAATTCATTTATCCAAAGTACTTATT CCAAGTGTTGCTTCGCCACTATGTACTTTATAAAATATATAtct] [+] EMBL CD142277 [ GAAAACAGATCTGGATTGAACAGTGCGATCTTCCAATATCCCAAATGAGTTTCGTGCAAATTATTAAAAACGAGTTTACAGTGACGAGGTTGTTACCTGATGGTCGTCATATTGGAAAGCCAGTCCCTCTTTTCCGGAAAATAGATACTGATGAAATTAAACGTTTGTCTCAAGTTTATAGTGGTTCATCTGGTGCGTCTGTGACTAATGGAAACGATACAAAGTAAAAAAAATCACTAATGTATGTGTGACTTTTCTGAAAAATCATTTCTTATGACAATTCATTTAT ] consensusID : consensus_7241#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 687 fasta sequence [TTTACTGTATCGGAGACCTGAATCACAAGATAGTGCCTTTATCTGGGATGATTTCATGTTGGTAAATAATTCAGAATTGTTGAATAATTTAGGTAATTTTGTTAATCGATCTCTTTCTTTTGTGTCACGATTTTTCAATTCGATTTTTCCGTCAATAACAAAATTAGAACCAGTTGATACCGAATTCTTGGCCAGAATTAATAAACTCTTCGCTACTTATATACACAATATGGAGTCAGGTCATCTTCGAATGGCTATTCGAAATGTATTGACAATTGCTCGNCCTGGTATGGGTACTTTCAGGCCATCAACCGTGGGTCGCTGGTAGTAAACGGAAACAAAGAAACGTCTGGTGTTGNNGATAGCGTTGCTGCTATAATGGCTGCCTTCTGGNGCTATGATTATCCATCATGCCTCGATGGAAAACGATCTGATTGACAGGCCGACTCCAATCCAAAGGGGTTCGGCAAATATTAAACGGTTTACGGGCAGGTGTCCTGGGGGCTCAATTGAAACCAGCCCTTTTCGCGAATAAACGGAAAAAAACGTGGCCAATTTAAGGGATTGGGGGCGGGACATTGGACCCCCCNAAAAAACCCCGGGGGGGGGTTTTTGGAAAATTTTTTGAGATTTTTTTCCCACGGCATTTCCAGGGGGGGGCCCCCCCCCCTTTTCTAAAAAAAAATT] [+] EMBL CD078218 [TTTACTGTATCGGAGACCTGAATCACAAGATAGTGCCTTTATCTGGGATGATTTCATGTTGGTAAATAATTCAGAATTGTTGAATAATTTAGGTAATTTTGTTAATCGATCTCTTTCTTTTGTGTCACGATTTTTCAATTCGATTTTTCCGTCA ] [+] EMBL CD079420 [ CGGAGACCTGAATCACAAGATAGCGCCTTTATCTGGGATGATTTCATGTTGGTAAATAATTCAGAACTGTTGAATAATTTAGGTAATTTTGTTAATCGATCTCTTTCTTTTGTGTCACGATTTTTCAATTCGATTATTCCGTCAATAACAAAATTAGAACCAGTTGATACCGAATTCTTGGCCAGAATTAATAAACTCTTCGCTACTTATATACACAATATGGAGTCAGGTCATCTTCGAATGGCTATTCGAAATGTATTGACAATTGCTCGNCCTGGTATGGGTACTTTCAGGCCATCAACCGTGGGTCGCTGGTAGTAAACGGAAACAAAGAAACGTCTGGTGTTGNNGATAGCGTTGCTGCTATAATGGCTGCCTTCTGGNGCTATGATTATCCATCATGCCTCGATGGAAAACGATCTGATTGACAGGCCGACTCCAATCCAAAGGGGTTCGGCAAATATTAAACGGTTTACGGGCAGGTGTCCTGGGGGCTCAATTGAAACCAGCCCTTTTCGCGAATAAACGGAAAAAAACGTGGCCAATTTAAGGGATTGGGGGCGGGACATTGGACCCCCCNAAAAAACCCCGGGGGGGGGTTTTTGGAAAATTTTTTGAGATTTTTTTCCCACGGCATTTCCAGGGGGGGGCCCCCCCCCCTTTTCTAAAAAAAAATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7241#0 CCANAATTCGGCACGAGGCGCAGACCTGAAT-ACAAGATAGTGCCTTTATCTGGGATGAT 59 consensus_7241#1 -------TTTAC-TGTATCGGAGACCTGAATCACAAGATAGTGCCTTTATCTGGGATGAT 52 * * * ** ********** **************************** consensus_7241#0 TTCATGTTGGTAAATAATTCAGAATTGTTGAATAATTTAGGTAATTTTGTTAATCGATCT 119 consensus_7241#1 TTCATGTTGGTAAATAATTCAGAATTGTTGAATAATTTAGGTAATTTTGTTAATCGATCT 112 ************************************************************ consensus_7241#0 CTTTCTTTTGTGTCACGATTTTTCAATTCGATTATTCCGTCAATAACAAAATTAGAACCA 179 consensus_7241#1 CTTTCTTTTGTGTCACGATTTTTCAATTCGATTTTTCCGTCAATAACAAAATTAGAACCA 172 ********************************* ************************** consensus_7241#0 GTTGATACCGAATTCTTGGCCAGAATTAATAAACTCTTCGCTACTTATATACACAATATG 239 consensus_7241#1 GTTGATACCGAATTCTTGGCCAGAATTAATAAACTCTTCGCTACTTATATACACAATATG 232 ************************************************************ consensus_7241#0 GAGTCATGTCATCTTCGAGATGCTATTCGAAATGTATTGACAATTGCTCGTCTTGGTAAT 299 consensus_7241#1 GAGTCAGGTCATCTTCGAATGGCTATTCGAAATGTATTGACAATTGCTCGNCCTGGTA-T 291 ****** *********** ***************************** * ***** * consensus_7241#0 GGTTACTTTCAGGCCAATCAACCGTGGGTCGCTGTTAAGAAACCGGAAACAAAAGAACGT 359 consensus_7241#1 GGGTACTTTCAGGCCA-TCAACCGTGGGTCGCTGGTAGTAAAC-GGAAACAAAGAAACGT 349 ** ************* ***************** ** **** ********* ***** consensus_7241#0 TCTGGTGTTGTGATAAGCGTTGCTGCTAATATTGCTTGTCTTCTTGGTGCTATGATTTAT 419 consensus_7241#1 -CTGGTGTTGNNGATAGCGTTGCTGCTA-TAATGGCTGCCTTCT-GGNGCTATGATT-AT 405 ********* ************* ** ** ** ***** ** ********* ** consensus_7241#0 CCATTCATGCCTACGATTGGAAAACAGATCTGGATTGAACAGTGCGATCTTCCAATATCC 479 consensus_7241#1 CCAT-CATGCCT-CGAT-GGAAAAC-GATCTG-ATTGA-CAGGCCGAC--TCCAAT---C 454 **** ******* **** ******* ****** ***** *** *** ****** * consensus_7241#0 CAAATGAGTTTCGTGCAAATTATTAAAAACGAGTTTACAGTGACGAGGTTGTTACCTGAT 539 consensus_7241#1 CAAAGGGGTTCGGC---AAATATTAAA---CGGTTTACGG----GCAGGTGT--CCTGGG 502 **** * *** * ** ******* ****** * * * *** **** consensus_7241#0 GGTCATCATATTGGAAAGCCAGTCCCTCTTTTCCGGAAAATAGATACTGATGAAATTAAA 599 consensus_7241#1 GGC--TCA-ATTGAAA--CCAGCCCTTTTC-----GCGAATAAA------CGGAAAAAAA 546 ** *** **** ** **** ** * * * **** * * ** *** consensus_7241#0 CGTTTGTCTCAAGTTTATAGTGGTTCATCTGGTGCGTCTGTGACTAATGGAAACGATACA 659 consensus_7241#1 CGTG----GCCAATTTAAGGGATTGGGGGCGGGACATTGG--ACCCCCCNAAAAAACCCC 600 *** * * **** * * ** * * * ** *** * * consensus_7241#0 AAGTAAAAAAAATCACTAATGTATGTGTGACTTTTCTGAAAAATCATTTCTTATGACAAT 719 consensus_7241#1 GGGGGGGGGTTTTTGGAAAATTTTTTGAGATTTTTTTCCCACGGCATTTCCAGGGGGGGG 660 * * ** * * ** ** **** * * ****** * consensus_7241#0 TCATTTATCCCAAGTACTTATTNCCAAGTGTTGCTTCCCCACTATGTACTTTATAGAATA 779 consensus_7241#1 CCCCCCCCCCT-----TTTCTAAAAAAAAATT---------------------------- 687 * ** ** * ** ** consensus_7241#0 TATANTC 786 consensus_7241#1 ------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||