cluster # 7245

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Schistosoma mansoni
cluster # 7245 cluster # 7245 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7245#0 length = 768 sequences # 2

consensus_7245#1 length = 454 sequences # 1
consensus_7245#2 length = 323 sequences # 2

consensusID : consensus_7245#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 768
fasta sequence

                              [CATGTAGCTACACTACCTTTATTCTCTGTATTCGAGCTACGCAGTTGTCTGGCAAGTGGAGTAATTATGTTGAATCTGGAAAGTTATACCATGGAACAAATTGCAGACTTAGTTTTAAATTTATTAATATCGGAAGACCGTCTACCGTTAGATCAAAGAGATTTACTATTCGATGTGTTACTACGTCGTCATGTTCATTTACATGAACGACTTCGACCGAAACTTATTGGTCGTAGTGCAACAAATCTTCCGTTGATTCGATCATTAGCAGATATTGGTAAACGACACTCAGCAAAAGATGTTGAAAAAGCTGGAGAAGCACCTTATACATCGCTAGCTAAAATGCCTACATTAACTGGAATGGATTCATTGGATCCGGCTACAGCTGCACATATTACAGCTCATGCACAAGCACAACCATCTGGACCATCTGAAGTAATGTCTGGTAGTTTACAAGGGAAATACGATTTACATTTCTTGAAAAAAATTGCGCCTGGATCAGAAACTTCCAATATACTTGTCGGTGAAACAACATTTTTAACAACACAAATCACTGTATTCATTCGTTTAAAAGAGGCTGTTTTACTTGGTGATCTTACTGAAGTACCAGTACCGACAAGATTTCTATTTATACATTTGGGTACTATAGGTAATGCAGCTAAATATCGTGAAATTGGCCGTTCCATGGGTGTACTTATGTCCGATGAAGTATTTCATGATGTTGCTTACAAGGCTCGATCTAGAACAGATTTATTAGCCGGCTTAGAT]

[+] EMBL CD188689             [CATGTAGCTACACTACCTTTATTCTCTGTATTCGAGCTACGCAGTTGTCTGGCAAGTGGAGTAATTATGTTGAATCTGGAAAGTTATACCATGGAACAAATTGCAGACTTAGTTTTAAATTTATTAATATCGGAAGACCGTCTACCGTTAGATCAAAGAGATTTACTATTCGATGTGTTACTACGTCGTCATGTTCATTTACATGAACGACTTCGACCGAAACTTATTGGTCGTAGTGCAACAAATCTTCCGTTGATTCGATCATTAGCAGATATTGGTAAACGACACTCAGCAAAAGATGTTGAAAAAGCTGGAGAAGCACCTTATACATCGCTAGCTAAAATGCCTACATTAACTGGAATGGATTCATTGGATCCGGCTACAGCTGCACATATTACAGCTCATGCACAAGCACAACCATCTGGACCATCTGAAGTAATGTCTGGTAGTTTACAAGGGAAATACGATTTACATTTCTTGAA                                                                                                                                                                                                                                                                                              ]
[+] EMBL CD187084             [                                                                                                                                                                                                                                                                                                                                                                               CATTGGATCCGGCTACAGCTGCACATATTACAGCTCATGCACAAGCACAACCATCTGGACCATCTGAAGTAATGTCTGGTAGTTTACAAGGGAAATACGATTTACATTTCTTGAAAAAAATTGCGCCTGGATCAGAAACTTCCAATATACTTGTCGGTGAAACAACATTTTTAACAACACAAATCACTGTATTCATTCGTTTAAAAGAGGCTGTTTTACTTGGTGATCTTACTGAAGTACCAGTACCGACAAGATTTCTATTTATACATTTGGGTACTATAGGTAATGCAGCTAAATATCGTGAAATTGGCCGTTCCATGGGTGTACTTATGTCCGATGAAGTATTTCATGATGTTGCTTACAAGGCTCGATCTAGAACAGATTTATTAGCCGGCTTAGAT]




>consensus_7245#0
CATGTAGCTACACTACCTTTATTCTCTGTATTCGAGCTACGCAGTTGTCTGGCAAGTGGA
GTAATTATGTTGAATCTGGAAAGTTATACCATGGAACAAATTGCAGACTTAGTTTTAAAT
TTATTAATATCGGAAGACCGTCTACCGTTAGATCAAAGAGATTTACTATTCGATGTGTTA
CTACGTCGTCATGTTCATTTACATGAACGACTTCGACCGAAACTTATTGGTCGTAGTGCA
ACAAATCTTCCGTTGATTCGATCATTAGCAGATATTGGTAAACGACACTCAGCAAAAGAT
GTTGAAAAAGCTGGAGAAGCACCTTATACATCGCTAGCTAAAATGCCTACATTAACTGGA
ATGGATTCATTGGATCCGGCTACAGCTGCACATATTACAGCTCATGCACAAGCACAACCA
TCTGGACCATCTGAAGTAATGTCTGGTAGTTTACAAGGGAAATACGATTTACATTTCTTG
AAAAAAATTGCGCCTGGATCAGAAACTTCCAATATACTTGTCGGTGAAACAACATTTTTA
ACAACACAAATCACTGTATTCATTCGTTTAAAAGAGGCTGTTTTACTTGGTGATCTTACT
GAAGTACCAGTACCGACAAGATTTCTATTTATACATTTGGGTACTATAGGTAATGCAGCT
AAATATCGTGAAATTGGCCGTTCCATGGGTGTACTTATGTCCGATGAAGTATTTCATGAT
GTTGCTTACAAGGCTCGATCTAGAACAGATTTATTAGCCGGCTTAGAT

consensusID : consensus_7245#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 454
fasta sequence

                              [CCATAGTTCATCTAATTCACAGAATAACTGATGTGTTTGCTCATCATCACCATCACATTCACCAAGTAAAAACATTACATGTTCACTTGGATTTGTAGGAAAGGCCTTTGAACTTTCCTCCCTTGTACTGTTTGTACCGATGCGTTTACGTCGTCGACGATGGCGATGAGCTGAAGGTCCTGATGCAATTCCTCGGGGGAACTGTGACGTGCTGAGCGTAGCTATATCATTGTTTACGGATAATCCAGCTATCATAGACACTTTAGATCGATGATCTTCGATTTCATCTTGAGAAGGTTCACCGATATTATACTTTACTTTAGAGTCAAGAATTGGCTCATCACCCAAGTTTCCAGGCTCAGACATGAGACTTCGAGAATGAATTATGCCAGCATGCGATCACTTTGAGCGCTTATAAACTGGAAGAACCATAGACTTCTCACTGACAAAAACG]

[+] EMBL CD189132             [CCATAGTTCATCTAATTCACAGAATAACTGATGTGTTTGCTCATCATCACCATCACATTCACCAAGTAAAAACATTACATGTTCACTTGGATTTGTAGGAAAGGCCTTTGAACTTTCCTCCCTTGTACTGTTTGTACCGATGCGTTTACGTCGTCGACGATGGCGATGAGCTGAAGGTCCTGATGCAATTCCTCGGGGGAACTGTGACGTGCTGAGCGTAGCTATATCATTGTTTACGGATAATCCAGCTATCATAGACACTTTAGATCGATGATCTTCGATTTCATCTTGAGAAGGTTCACCGATATTATACTTTACTTTAGAGTCAAGAATTGGCTCATCACCCAAGTTTCCAGGCTCAGACATGAGACTTCGAGAATGAATTATGCCAGCATGCGATCACTTTGAGCGCTTATAAACTGGAAGAACCATAGACTTCTCACTGACAAAAACG]




>consensus_7245#1
CCATAGTTCATCTAATTCACAGAATAACTGATGTGTTTGCTCATCATCACCATCACATTC
ACCAAGTAAAAACATTACATGTTCACTTGGATTTGTAGGAAAGGCCTTTGAACTTTCCTC
CCTTGTACTGTTTGTACCGATGCGTTTACGTCGTCGACGATGGCGATGAGCTGAAGGTCC
TGATGCAATTCCTCGGGGGAACTGTGACGTGCTGAGCGTAGCTATATCATTGTTTACGGA
TAATCCAGCTATCATAGACACTTTAGATCGATGATCTTCGATTTCATCTTGAGAAGGTTC
ACCGATATTATACTTTACTTTAGAGTCAAGAATTGGCTCATCACCCAAGTTTCCAGGCTC
AGACATGAGACTTCGAGAATGAATTATGCCAGCATGCGATCACTTTGAGCGCTTATAAAC
TGGAAGAACCATAGACTTCTCACTGACAAAAACG

consensusID : consensus_7245#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 323
fasta sequence

                              [TCAGGACCTTCATCTGATCGCCTTCGTTGACTACTGAAACGCATTGGTCCAAACAGTGCAAGGGAGGAAAGTTCAGAGGCCTTTTCTACAAATCCAAGTGAACATGTAATGTTTTTACTTGGTGAATGTGATGGTGATG-ATGAGCAAACACATCAGTTATTGTGTGAATTAGATGAACTATGGAATGACCCATCAGGATCAGGTGAAACCGAATGGCGAGAAGCCGCACGATGGATTAAATT-TGAAGAGGAT-GT-TGAAGAAAATGGAGAACGTTGGTCTAAACCTCATGTAGCTACACTACCTTTATTCTCTGTATTCGAGCT]

[+] EMBL CD084819             [TCAGGACCTTCATCTGATCGCCTTCGTTGACTACTGAAACGCATTGGTCCAAACAGTGCAAGGGAGGAAAGTTCAGAGGCCTTTTCTACAAATCCAAGTGAACATGTAATGTTTTTACTTGGTGAATGTGATGGTGATG ATGAGCAAACACATCAGTTATTGTGTGAATTAGATGAACTATGGAATGACCCATCAGGATCAGGTGAAACCGAATGGCGAGAAGCCGCACGATGGATTAAATT TGAAGAGGAT GT TGAAGAAAATGGAGAACGTTGGTCTAAACCTCATGTAGCTACACTACCTTTATTCTCTGTATTCGAGCT]
[-] EMBL CD167336             [                                                                                                     ACATGTAATGTTTTTACTTGGTGAATGTGATGGTGATGAATGAGCAAACACATCAGTTATTCTGTGAATTAGATGAAATATGGAATGACCCATCAGGATCAGGTGAAACCGAATGGCGAGAAGCCGCAAGATGGATTAAATTATGAAGAGGATGGTGTGAAGA                                                               ]




>consensus_7245#2
TCAGGACCTTCATCTGATCGCCTTCGTTGACTACTGAAACGCATTGGTCCAAACAGTGCA
AGGGAGGAAAGTTCAGAGGCCTTTTCTACAAATCCAAGTGAACATGTAATGTTTTTACTT
GGTGAATGTGATGGTGATGATGAGCAAACACATCAGTTATTGTGTGAATTAGATGAACTA
TGGAATGACCCATCAGGATCAGGTGAAACCGAATGGCGAGAAGCCGCACGATGGATTAAA
TTTGAAGAGGATGTTGAAGAAAATGGAGAACGTTGGTCTAAACCTCATGTAGCTACACTA
CCTTTATTCTCTGTATTCGAGCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7245#0      -------CATGTAGCTACACTACCTTTAT--TCTCTGTATTCGAGCTACGCAGTTGTCTG 51
consensus_7245#2      -------TCAGGACCTTCATCTGATCGCC--TTCGTTGACTACTGAAACGCATTGGTC-- 49
consensus_7245#1      CCATAGTTCATCTAATTCACAGAATAACTGATGTGTTTGCTCATCATCACCATCACATT- 59
                                     * **     *      *   *    *         **        

consensus_7245#0      GCAAGTGGAGTAATTATGTTGAATCTGGAAAGTTATACCATGGAACAAATTGCAGACTTA 111
consensus_7245#2      -CAAACAGTGCAAGGGAGGAAAGTTCAGAGGCCTTTTCTACAAATCCAAGTGAACATGTA 108
consensus_7245#1      -CACCAAGTAAAAACATTACATGTTCACTTGGATTTGTAGGAAAGGCCTTTGAACTTTCC 118
                       **    *   **          *         * *       *      ** *      

consensus_7245#0      GTTTTAAATTTATTAATATCGG---AAGACCGTCTACCGTTAGATCAAAGAGATTTACTA 168
consensus_7245#2      ATGTT---TTTACTT------G---GTGAATGTG-ATGGTGATGATGAGCAAACACATCA 155
consensus_7245#1      TCCCTTGTACTGTTTGTACCGATGCGTTTACGTCGTCGACGATGGCGATGAGCTGAAGGT 178
                          *     *  *                 **        *     *  *     *   

consensus_7245#0      TTCGATGTGTTACTACGTCGTCATGTTCATTTACATGAACGACTTCGACCGAAACTTATT 228
consensus_7245#2      GTTATTGTGTGAATTAGATGAACTATGGAATGACCC-ATCAGGATCAGGTGAAACCGAAT 214
consensus_7245#1      CCTGATGCAATTCCTCGGGGGAACTGTGACGTGCTGAGCGTAGCTATATCATTGTTTACG 238
                           **         *  *        *    *          *            *  

consensus_7245#0      GGTCGTAGTGCAACAAATCTTCCGTTGATTCGATCATTAGCAGATATTGGTAAACGACAC 288
consensus_7245#2      GG--------CGAGAAGCCGCACGATGGATTAA------------ATTTGAAGAGGATGT 254
consensus_7245#1      GATAATCCAGCTATCATAGACACTTTAGATCGATGATCTTCGATTTCATCTTGAGAAGGT 298
                      *         * *  *      *  *   *  *                    *  *   

consensus_7245#0      TCAGCAAAAGATGTTGAAAAAGCTGGAGAAGCACCTTATACATCGCTAGCTAAAATGCCT 348
consensus_7245#2      TGAAGAAAA----TGGAGAACGTTGGTCTAA-ACCTCATG------TAGCTACACTACCT 303
consensus_7245#1      TCACCGATA------TTATACTTTACTTTAGAGTCAAGAAT-----TGGCT-CATCACCC 346
                      * *   * *          *   *     *    *           * ***  *   ** 

consensus_7245#0      ACATTAACTGGAATGGATTCATTGGATCCGGCTACAGCTGCACATATTACAGCTCATGCA 408
consensus_7245#2      TTATTCTCTGTATTCGAGCT---------------------------------------- 323
consensus_7245#1      AAGTTTCCAGGCTCAGACATGAGACTTCGAGAATGAATTATGCCAGCATGCGATCACTTT 406
                         **  * *     **                                           

consensus_7245#0      CAAGCACAACCATCTGGACCATCTGAAGTAATGTCTGGTAGTTTACAAGGGAAATACGAT 468
consensus_7245#2      ------------------------------------------------------------
consensus_7245#1      GAGCGCTTATAAACTGGAAGAACCATAGACTTCTCACTGACAAAAACG------------ 454
                                                                                  

consensus_7245#0      TTACATTTCTTGAAAAAAATTGCGCCTGGATCAGAAACTTCCAATATACTTGTCGGTGAA 528
consensus_7245#2      ------------------------------------------------------------
consensus_7245#1      ------------------------------------------------------------
                                                                                  

consensus_7245#0      ACAACATTTTTAACAACACAAATCACTGTATTCATTCGTTTAAAAGAGGCTGTTTTACTT 588
consensus_7245#2      ------------------------------------------------------------
consensus_7245#1      ------------------------------------------------------------
                                                                                  

consensus_7245#0      GGTGATCTTACTGAAGTACCAGTACCGACAAGATTTCTATTTATACATTTGGGTACTATA 648
consensus_7245#2      ------------------------------------------------------------
consensus_7245#1      ------------------------------------------------------------
                                                                                  

consensus_7245#0      GGTAATGCAGCTAAATATCGTGAAATTGGCCGTTCCATGGGTGTACTTATGTCCGATGAA 708
consensus_7245#2      ------------------------------------------------------------
consensus_7245#1      ------------------------------------------------------------
                                                                                  

consensus_7245#0      GTATTTCATGATGTTGCTTACAAGGCTCGATCTAGAACAGATTTATTAGCCGGCTTAGAT 768
consensus_7245#2      ------------------------------------------------------------
consensus_7245#1      ------------------------------------------------------------