cluster # 7251

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Schistosoma mansoni
cluster # 7251 cluster # 7251 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7251#0 length = 655 sequences # 3

consensus_7251#1 length = 600 sequences # 2

consensusID : consensus_7251#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 655
fasta sequence

                              [AATATTTATTTTATTGCAAACAAAATGAATGTGTAGAATGACAAAATATTTTTAAAATAATTCAGTTGAAACCGTACAACTGTTAGTTGAATAAATCACCACAGATAAAGGTGATTTTCTAACAAGAATTGATGTCGTTTGAGGTTTATTTCCAGCTTAGATGGTGGGTTTTTGTTTATCGATGAAGAATCGCAAACTACGATGAAACAATTGGTTATTAATGTGACCCCCCACCCCACCTTGGTTATTAATGGCACTTACGCTAATTAATATTAGTGTCGATGATAAAGACCATCAGCGAAAATGTAAACAGCCAGAAAAACCTCTCGATAAAGCTTTGAAAAGTTTCAAAAGACACAGAAATAAATATAGTGTTTTTTCTCTCTCTCTCTCTCTGAAATGACTAGAAACAGTTTGTCTAATATAGAGGAGAAAGCAAAGAAGGACAATGGATATAATAATGTAAATTGTTGATTAGATTTCTTATTTACAAGACCAAAATTGTTCATATTCTTTCAATGCTTTACGAAAAGCTCCCGTATGCACACCATTAGGTACGTGATGGCTGTGAACACCTAGACTNTNTACTTCTTTGATATTCCAGTGTAGATCATCGAANAATATCATTNTATTGTATGGAATTTTAGTCTTTCGT]

[+] EMBL CD075597             [AATATTTATTTTATTGCAAACAAAATGAATGTGTAGAATGACAAAATATTTTTAAAATAATTCAGTTGAAACCGTACAACTGTTAGTTGAATAAATCACCACAGATAAAGGTGATTTTCTAACAAGAATTGATGTCGTTTGAGGTTTATTTCCAGCTTAGATGGTGGGTTTTTGTTTATCGATGAAGAATCGCAAACTACGATGAAACAATTGGTTATTAATGTGACCCCCCACCCCACCTTGGTTATTAATGGCACTTACGCTAATTAATATTAGTGTCGATGATAAAGACCATCAGCGAAAATGTAAACAGCCAGAAAAACCTCTCGATAAAGCTTTGAAAAGTTTCAAAAGACACAGAAATAAATATAGTGTTTTTTCTCTCTCTCTCTCTCTGAAATGACTAGAAACAGTTTGTCTAATATAGAGGAGAAAGCAAAGAAGGACAATGGATATAATAATGTAAATTGTTGATTAGATTTCTTATTTACAAGACCAAAATTGTTCATATTCTTTCAATGCTTTACGAAAAGCTCCCGTATGCACACCATTAGGTACGTGATGGCTGTGAACACCTAGACTNTNTACTTCTTTGATATTCCAGTGTAGATCATCGAANAATATCATTNTATTGTATGGAATTTTAGTCTTTCGT]
[+] EMBL CD077245             [    TTTATTTCATTGCAAACAAAATGAATGTGTAGAATGACAAAATATTTTTAAAATAATTCAGTTGAAACCGTACAACTGTTAGTTGAATAAATCACCACAGATAAAGGTGATTTTCTAACAAGAATTGATGTCGTTTGAGGTTTATTTCCAGCTTAAATGGTGGGTTTTTGTTTATCGATGAAGAATCGCAAACTACGATGAAACAATTGGTTATTAATGTGACCCCCCACCCCACCTTGGTTATTAATGGCACTTACGCTAATTAATATTGGTGTCGATGATAAAGACCATCAGCGAAAATGTAAACAGCCAGAAAAACCTCTCGATAAAGCTTTGAAAAGTTTCAAAAGACACAGAAATAAATATAGTGTTTTT  TCTCTCTCTCTCTCTGAAATGACTAGAAACAGTTTGTCTAATATAGAGGAGAAAGCAAAGAAGGACAATGGATATAATAATGTAAATTGTTGATTAGATTTCTTATTTACAAGACCAAAATTGTTCATATTCTTTCAATGCTTTACGAAAAGCTCCCGTATGCACACCATTAGGTACGTGATGGCTGTGAACACCTAGACTTTTTACTTCTTTGATA                                                         ]
[-] EMBL CD083535             [                              GTGTAGAATGACAAAATATTTTTAAAATAATTCAGTTGAAACCGTACAACTGTTAGTTGAATAAATCACCACAGATAAAGGTGATTTTCTAACAAGAATTGATGTCGTTTGAGGTTTATTTCCAGCTTAGATGGTGGGTTTTTGTTTATCGATGAAGAATCGCAAACTACGATGAAACAATTGGTTATTAATGTGACCCCCCACCCCACCTTGGTTATTAATGGCACTTACGCTAATTAATATTAGTGTCGATGATAAAGACCATCAGCGAAAATGTAAACAGCCAGAAAAACCTCTCGATAAAGCTTTGAAAAGTTTCAAAAGACACAGAAATAAATATAGTGTTTTTTCTCTCTCTCTCTCTCTGAAATGACTAGAAACAGTTTGTCTAATATAGAGGAGAAAGCAAAGAAGGACAATGGATATAATAATGTAAATTGTTGATTAGATTTCTTATTTACAAGACCAAAATTGTTCATATTCTTTCAATGCTTTACGAAAAGCTCCCG ATGCACACCA TAGGTACGTGATGGCTcctcgt                                                                                  ]




>consensus_7251#0
AATATTTATTTTATTGCAAACAAAATGAATGTGTAGAATGACAAAATATTTTTAAAATAA
TTCAGTTGAAACCGTACAACTGTTAGTTGAATAAATCACCACAGATAAAGGTGATTTTCT
AACAAGAATTGATGTCGTTTGAGGTTTATTTCCAGCTTAGATGGTGGGTTTTTGTTTATC
GATGAAGAATCGCAAACTACGATGAAACAATTGGTTATTAATGTGACCCCCCACCCCACC
TTGGTTATTAATGGCACTTACGCTAATTAATATTAGTGTCGATGATAAAGACCATCAGCG
AAAATGTAAACAGCCAGAAAAACCTCTCGATAAAGCTTTGAAAAGTTTCAAAAGACACAG
AAATAAATATAGTGTTTTTTCTCTCTCTCTCTCTCTGAAATGACTAGAAACAGTTTGTCT
AATATAGAGGAGAAAGCAAAGAAGGACAATGGATATAATAATGTAAATTGTTGATTAGAT
TTCTTATTTACAAGACCAAAATTGTTCATATTCTTTCAATGCTTTACGAAAAGCTCCCGT
ATGCACACCATTAGGTACGTGATGGCTGTGAACACCTAGACTNTNTACTTCTTTGATATT
CCAGTGTAGATCATCGAANAATATCATTNTATTGTATGGAATTTTAGTCTTTCGT

consensusID : consensus_7251#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 600
fasta sequence

                              [TTTATGCACAATGNAGGTAGAGCAAATTTTTAAATATCAGTGAACGTCACTGTTAGTGATAATCCCCCAGATAAGTGATTTCTACAGATTGATGTCGTTGAGTTANNTTCAGCTAGATGTGGGTTTTGTTATCGATGAGAATCGCAACTACGATGANCANTTGGTATTAATGTGACCCCCCNCCCACCTTGGTATTTATGGCACTANCGCTATTAATATTAGTGTCGATGATAAGACCATCAGCGANAATGTAACAGCCAGAAAAACCTCTCGATANAGCTTTGAAAAGTTTCAAAAGACACAGAAATAAATATAGTGTTTTTTCTCTCTCTCTCTCTCTGAAATGACTAGAAACAGTTTGTCTAATATAGAGGAGAAAGCAAAGAAGGACAATGGATATAATAATGTAAATTGTTGATTAGATTTCTTATTTACAAGACCAAAATTGTTCATATTCTTTCAATGCTTTACGAAAAGCTCCCGTATGCACACCATTAGGTACGTGATGGCTGTGAACACCTAGACTTTTTACTTCTTTGATATTCCAGTGTAGATCATCGAAAAATATCATTTTATTGTATGGAATTTTAGTCTTTCGTT]

[-] EMBL CD081895             [TTTATGCACAATGNAGGTAGAGCAAATTTTTAAATATCAGTGAACGTCACTGTTAGTGATAATCCCCCAGATAAGTGATTTCTACAGATTGATGTCGTTGAGTTANNTTCAGCTAGATGTGGGTTTTGTTATCGATGAGAATCGCAACTACGATGANCANTTGGTATTAATGTGACCCCCCNCCCACCTTGGTATTTATGGCACTANCGCTATTAATATTAGTGTCGATGATAAGACCATCAGCGANAATGTAACAGCCAGAAAAACCTCTCGATANAGCTTTGAAAAGTTTCAAAAGACACAGAAATAAATATAGTGTTTTTTCTCTCTCTCTCTCTCTGAAATGACTAGAAACAGTTTGTCTAATATAGAGGAGAAAGCAAAGAAGGACAATGGATATAATAATGTAAATTGTTGATTAGATTTCTTATTTACAAGACCAAAATTGTTCATATTCTTTCAATGCTTTACGAAAAGCTCCCGTATGCACACCATTAGGTACGTGATGGCTGTGAACACCTAGACTTTTTACTTCTTTGATATTCCAGTGTAGATCATCGAAAAATATCATTTTATTGTATGGAATTTTAGTCTTTCGTT]
[-] EMBL CD077430             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          AAGCTCCCGTATGCACACCATTAGGTACGTGATGGCTGTGAACACCTAGACTTTTTACTTCTTTGATATTCCAGTGTAGATCATCGAAAAATATCATTTTATTGTATGGAATTTTAGTCTTTCGTT]




>consensus_7251#1
TTTATGCACAATGNAGGTAGAGCAAATTTTTAAATATCAGTGAACGTCACTGTTAGTGAT
AATCCCCCAGATAAGTGATTTCTACAGATTGATGTCGTTGAGTTANNTTCAGCTAGATGT
GGGTTTTGTTATCGATGAGAATCGCAACTACGATGANCANTTGGTATTAATGTGACCCCC
CNCCCACCTTGGTATTTATGGCACTANCGCTATTAATATTAGTGTCGATGATAAGACCAT
CAGCGANAATGTAACAGCCAGAAAAACCTCTCGATANAGCTTTGAAAAGTTTCAAAAGAC
ACAGAAATAAATATAGTGTTTTTTCTCTCTCTCTCTCTCTGAAATGACTAGAAACAGTTT
GTCTAATATAGAGGAGAAAGCAAAGAAGGACAATGGATATAATAATGTAAATTGTTGATT
AGATTTCTTATTTACAAGACCAAAATTGTTCATATTCTTTCAATGCTTTACGAAAAGCTC
CCGTATGCACACCATTAGGTACGTGATGGCTGTGAACACCTAGACTTTTTACTTCTTTGA
TATTCCAGTGTAGATCATCGAAAAATATCATTTTATTGTATGGAATTTTAGTCTTTCGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7251#0      AATATTTATTTTATTGCAAACAAAATGAATGTGTAGAATGACAAAATATTTTTAAAATAA 60
consensus_7251#1      --------------TTTATGCACAATGNAGGTAGAG-----CAAA----TTTTTAAATA- 36
                                    *  *  ** **** * **  **     ****    **** ***** 

consensus_7251#0      TTCAGTTGAAACCGTACAACTGTTAGTTGAATAAATCACCACAGATAAAGGTGATTTTCT 120
consensus_7251#1      -TCAGTGAACGTC-----ACTGTTAGT--GATAATCCCCCA--GATAA--GTGATTTC-- 82
                       *****  *   *     *********   ****  * ***  *****  *******   

consensus_7251#0      AACAAGAATTGATGTCGTTTGAGGTTTATTTCCAGCTTAGATGGTGGGTTTTTGTTTATC 180
consensus_7251#1      --TACAGATTGATGTCGTT---GAGTTANNTTCAGCT-AGATG-TGGGTTTTG--TTATC 133
                         *   ************   *  ***  * ***** ***** ********   *****

consensus_7251#0      GATGAAGAATCGCAAACTACGATGAAACAATTGGTTATTAATGTGACCCCCCACCCCACC 240
consensus_7251#1      GATGA-GAATCGCAA-CTACGATGAN-CANTTGGT-ATTAATGTGACCCCCCNCCC-ACC 188
                      ***** ********* *********  ** ***** **************** *** ***

consensus_7251#0      TTGGTTATTAATGGCACTTACGCTAATTAATATTAGTGTCGATGATAAAGACCATCAGCG 300
consensus_7251#1      TTGGT-ATTTATGGCACTANCGCTA-TTAATATTAGTGTCGATGATAA-GACCATCAGCG 245
                      ***** *** ********  ***** ********************** ***********

consensus_7251#0      AAAATGTAAACAGCCAGAAAAACCTCTCGATAAAGCTTTGAAAAGTTTCAAAAGACACAG 360
consensus_7251#1      ANAATGTAA-CAGCCAGAAAAACCTCTCGATANAGCTTTGAAAAGTTTCAAAAGACACAG 304
                      * ******* ********************** ***************************

consensus_7251#0      AAATAAATATAGTGTTTTTTCTCTCTCTCTCTCTCTGAAATGACTAGAAACAGTTTGTCT 420
consensus_7251#1      AAATAAATATAGTGTTTTTTCTCTCTCTCTCTCTCTGAAATGACTAGAAACAGTTTGTCT 364
                      ************************************************************

consensus_7251#0      AATATAGAGGAGAAAGCAAAGAAGGACAATGGATATAATAATGTAAATTGTTGATTAGAT 480
consensus_7251#1      AATATAGAGGAGAAAGCAAAGAAGGACAATGGATATAATAATGTAAATTGTTGATTAGAT 424
                      ************************************************************

consensus_7251#0      TTCTTATTTACAAGACCAAAATTGTTCATATTCTTTCAATGCTTTACGAAAAGCTCCCGT 540
consensus_7251#1      TTCTTATTTACAAGACCAAAATTGTTCATATTCTTTCAATGCTTTACGAAAAGCTCCCGT 484
                      ************************************************************

consensus_7251#0      ATGCACACCATTAGGTACGTGATGGCTGTGAACACCTAGACTNTNTACTTCTTTGATATT 600
consensus_7251#1      ATGCACACCATTAGGTACGTGATGGCTGTGAACACCTAGACTTTTTACTTCTTTGATATT 544
                      ****************************************** * ***************

consensus_7251#0      CCAGTGTAGATCATCGAANAATATCATTNTATTGTATGGAATTTTAGTCTTTCGT- 655
consensus_7251#1      CCAGTGTAGATCATCGAAAAATATCATTTTATTGTATGGAATTTTAGTCTTTCGTT 600
                      ****************** ********* **************************