cluster # 7254

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Schistosoma mansoni
cluster # 7254 cluster # 7254 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7254#0 length = 638 sequences # 3

consensus_7254#1 length = 452 sequences # 2

consensusID : consensus_7254#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 638
fasta sequence

                              [CACCTGGATGATGAAAGGATATTTACTGCAGCGAACTTAGCAGATGCCGAGAGGATTCGTGCTTCACAATCTGTTAATCTGTTCACATTTGTACTCTTTCTTTACATACAACAAATAAACAAGATATCACTGCGAGCGTCAGCAGTGCCAGCCAGTGCTGAGTGGCCTGGTAGTTACAGTCGTTCATCCGAGTTGGATTCAGGTCGTTCAACTCCTATCAGACTATGTCGCAATCTAGATGAGCAATATCATTTCCAGTTTATCAGTGAAAATTTGAATGAAATGCTTGATCTTCTTGTTGAACCCGATAAACAAAGTGGAAATAGTATGGATGCAACATTATCTGAAGGTGCTGTCGAAGCTTTGGATCTTGTTTTGGAAGGATCAGCTGATGAAGGAAGGACACTTAATTCATTTTCAGAACTTGCCCATATACCAACAATTCTTCCAGCAACTGGTTATTCCAAGGTTACACATGCTTTCCATTTGCGTGGCCTTCTTTCTTGGATTCGTTCATGGTTAACACANAACCCGTTTTCGGTTGAGAACTGTATTCTAAATGGTCGACGTTTACAGTGGCGTCTCCCTCATCAAGTTGTCTTGGACAATGAATCTGGTTTAAACAATACTCAGNCACA]

[+] EMBL CD093372             [CACCTGGATGATGAAAGGATATTTACTGCAGCGAACTTAGCAGATGCCGAGAGGATTCGTGCTTCACAATCTGTTAATCTGTTCACATTTGTACTCTTTCTTTACATACAACAAATAAACAAGATATCACTGCGAGCGTCAGCAGTGCCAGCCAGTGCTGAGTGGCCTGGTAGTTACAGTCGTTCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CD192488             [                                                                                                                      ACAAGATATCACTGCGAGCGTCAGCAGTGTCAGCCAGTGCTGAGTGGCCTGGTAGTTACAGTCGTTCATCCGAGTTGGATTCAGGTCGTTCAACTCCTATCAGACTATGTCGCAATCTAGATGAGCAATATCATTTCCAGTTTATCAGTGAAAATTTGAATGAAATGCTTGATCTTCTTGTTGAACCCGATAAACAAAGTGGAAATAGTATGGATGCAACATTATCTGAAGGTGCTGTCGAAGCTTTGGATCTTGTTTTGGAAGGATCAGCTGATGAAGGAAGGACACTTAATTCATTTTCAGAACTTGCCCATATACCAACAATTCTTCCAGCAACTGGTTATTCCAAGGTTACACATGCTTTCCATTTGCGTGGCCTTCTTTCTTGGATTCGTTCATGGTTAACACANAACCCGTTTTCGGTTGAGAACTGTATTCTAAATGGTCGACGTTTACAGTGGCGTCTCCCTCATCAAGTTGTCTTGGACAATGAATCTGGTTTAAACAATACTCAGNCACA]
[-] EMBL CD068093             [                                                                                                                                                                                      TTCATCCGAGTTGGATTCAGGTCGTTCAACTCCTATCAGACTATGTCGCAATCTAGATGAGCAATATCATTTCCAGTTTATCAGTGAAAATTTGAATGAAATGCTTGATCTTCTTGTTGAACCCGATAACCAAAGTGGAAATAGTATGGATGCAACATTATCTGAAGGTGCTGTCGAAGCTTTGGATCTTGTTTTGGAAGGATCAGCTGATGAAGGAAGGACACTTAATTCATTTTCAGAACTTGCCCATATACCAACAATTCTTCCAGCAACTGGTTATTCCAAGGTTACACATGCTTTCCATTTGCGTGGCCTTCTTTCTTGGATTCGTTCATGGTTAACACA AACCCGTTTTCGGTTGAAAACTGTATTCTAAATGGTCGACGTTTACAGTGGCGTCTCCCTCATCAAGTTGTCTTGGACAATG ATCTGG                     ]




>consensus_7254#0
CACCTGGATGATGAAAGGATATTTACTGCAGCGAACTTAGCAGATGCCGAGAGGATTCGT
GCTTCACAATCTGTTAATCTGTTCACATTTGTACTCTTTCTTTACATACAACAAATAAAC
AAGATATCACTGCGAGCGTCAGCAGTGCCAGCCAGTGCTGAGTGGCCTGGTAGTTACAGT
CGTTCATCCGAGTTGGATTCAGGTCGTTCAACTCCTATCAGACTATGTCGCAATCTAGAT
GAGCAATATCATTTCCAGTTTATCAGTGAAAATTTGAATGAAATGCTTGATCTTCTTGTT
GAACCCGATAAACAAAGTGGAAATAGTATGGATGCAACATTATCTGAAGGTGCTGTCGAA
GCTTTGGATCTTGTTTTGGAAGGATCAGCTGATGAAGGAAGGACACTTAATTCATTTTCA
GAACTTGCCCATATACCAACAATTCTTCCAGCAACTGGTTATTCCAAGGTTACACATGCT
TTCCATTTGCGTGGCCTTCTTTCTTGGATTCGTTCATGGTTAACACANAACCCGTTTTCG
GTTGAGAACTGTATTCTAAATGGTCGACGTTTACAGTGGCGTCTCCCTCATCAAGTTGTC
TTGGACAATGAATCTGGTTTAAACAATACTCAGNCACA

consensusID : consensus_7254#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 452
fasta sequence

                              [AGATGAGCAATATCATTTCCAGTTAATCAGTGAAAATTTGAATGAGATGCTTGATCTTCTTGTTGAACCCGATAACCAAAGTGGAAATAGTATGGATGCAACATTATCTGAAGGTGCTGTCGAAGCTTTGGATCTTGTTTTGGAAGGATCAGCTGATGAAGGAAGGTGCAACTACTTTTACATACTTTTAACCTTATTTTATTTCAGGACACTTAATTCATTTTCAGAACTTGCCCATATACCAACAATTCTTCCAGCAACTGGTTATTCCAAGGTTACGCATGCTTTCCATTTGCGTGGCCTTCTTTCTTGGACTCGTTCATGGTTAACACAAAACCCGTTTTCGGTTGAAAACTGTATTCTAAATGGTCGACGTTTACAGTGGCGTCTCCCTCATCAAGTTGTCTTGGACAATGAATCTGGTTTAAACAATACTCAGCACAGCCTCTGGA]

[-] EMBL CD184843             [AGATGAGCAATATCATTTCCAGTTAATCAGTGAAAATTTGAATGAGATGCTTGATCTTCTTGTTGAACCCGATAACCAAAGTGGAAATAGTATGGATGCAACATTATCTGAAGGTGCTGTCGAAGCTTTGGATCTTGTTTTGGAAGGATCAGCTGATGAAGGAAGGTGCAACTACTTTTACATACTTTTAACCTTATTTTATTTCAGGACACTTAATTCATTTTCAGAACTTGCCCATATACCAACAATTCTTCCAGCAACTGGTTATTCCAAGGTTACGCATGCTTTCCATTTGCGTGGCCTTCTTTCTTGGACTCGTTCATGGTTAACACAAAACCCGTTTTCGGTTGAAAACTGTATTCTAAATGGTCGACGTTTACAGTGGCGTCTCCCTCATCAAGTTGTCTTGGACAATGAATCTGGTT                           ]
[-] EMBL CD126654             [                                                                                                                                                                                     ATACTTTTAACCTTATTTTATTTCAGGACACTTAATTCATTTTCAGAACTTGCCCATATACCAACAATTCTTCCAGCAACTGGTTATTCCAAGGTTACACATGCTTTCCATTTGCGTGGCCTTCTTTCTTGGATTCGTTCATGGTTAACACAAAACCCGTTTTCGGTTGAAAACTGTATTCTAAATGGTCGACGTTTACAGTGGCGTCTCCCTCATC AGTTGTCTTGGAC ATGAATCTGGTTTAAACAATACTCAGCACAGCCTCTGGA]




>consensus_7254#1
AGATGAGCAATATCATTTCCAGTTAATCAGTGAAAATTTGAATGAGATGCTTGATCTTCT
TGTTGAACCCGATAACCAAAGTGGAAATAGTATGGATGCAACATTATCTGAAGGTGCTGT
CGAAGCTTTGGATCTTGTTTTGGAAGGATCAGCTGATGAAGGAAGGTGCAACTACTTTTA
CATACTTTTAACCTTATTTTATTTCAGGACACTTAATTCATTTTCAGAACTTGCCCATAT
ACCAACAATTCTTCCAGCAACTGGTTATTCCAAGGTTACGCATGCTTTCCATTTGCGTGG
CCTTCTTTCTTGGACTCGTTCATGGTTAACACAAAACCCGTTTTCGGTTGAAAACTGTAT
TCTAAATGGTCGACGTTTACAGTGGCGTCTCCCTCATCAAGTTGTCTTGGACAATGAATC
TGGTTTAAACAATACTCAGCACAGCCTCTGGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7254#0      CACCTGGATGATGAAAGGATATTTACTGCAGCGAACTTAGCAGATGCCGAGAGGATTCGT 60
consensus_7254#1      ------------------------------------------------------------
                                                                                  

consensus_7254#0      GCTTCACAATCTGTTAATCTGTTCACATTTGTACTCTTTCTTTACATACAACAAATAAAC 120
consensus_7254#1      ------------------------------------------------------------
                                                                                  

consensus_7254#0      AAGATATCACTGCGAGCGTCAGCAGTGCCAGCCAGTGCTGAGTGGCCTGGTAGTTACAGT 180
consensus_7254#1      ------------------------------------------------------------
                                                                                  

consensus_7254#0      CGTTCATCCGAGTTGGATTCAGGTCGTTCAACTCCTATCAGACTATGTCGCAATCTAGAT 240
consensus_7254#1      --------------------------------------------------------AGAT 4
                                                                              ****

consensus_7254#0      GAGCAATATCATTTCCAGTTTATCAGTGAAAATTTGAATGAAATGCTTGATCTTCTTGTT 300
consensus_7254#1      GAGCAATATCATTTCCAGTTAATCAGTGAAAATTTGAATGAGATGCTTGATCTTCTTGTT 64
                      ******************** ******************** ******************

consensus_7254#0      GAACCCGATAAACAAAGTGGAAATAGTATGGATGCAACATTATCTGAAGGTGCTGTCGAA 360
consensus_7254#1      GAACCCGATAACCAAAGTGGAAATAGTATGGATGCAACATTATCTGAAGGTGCTGTCGAA 124
                      *********** ************************************************

consensus_7254#0      GCTTTGGATCTTGTTTTGGAAGGATCAGCTGATGAAGGAAGG------------------ 402
consensus_7254#1      GCTTTGGATCTTGTTTTGGAAGGATCAGCTGATGAAGGAAGGTGCAACTACTTTTACATA 184
                      ******************************************                  

consensus_7254#0      ------------------------ACACTTAATTCATTTTCAGAACTTGCCCATATACCA 438
consensus_7254#1      CTTTTAACCTTATTTTATTTCAGGACACTTAATTCATTTTCAGAACTTGCCCATATACCA 244
                                              ************************************

consensus_7254#0      ACAATTCTTCCAGCAACTGGTTATTCCAAGGTTACACATGCTTTCCATTTGCGTGGCCTT 498
consensus_7254#1      ACAATTCTTCCAGCAACTGGTTATTCCAAGGTTACGCATGCTTTCCATTTGCGTGGCCTT 304
                      *********************************** ************************

consensus_7254#0      CTTTCTTGGATTCGTTCATGGTTAACACANAACCCGTTTTCGGTTGAGAACTGTATTCTA 558
consensus_7254#1      CTTTCTTGGACTCGTTCATGGTTAACACAAAACCCGTTTTCGGTTGAAAACTGTATTCTA 364
                      ********** ****************** ***************** ************

consensus_7254#0      AATGGTCGACGTTTACAGTGGCGTCTCCCTCATCAAGTTGTCTTGGACAATGAATCTGGT 618
consensus_7254#1      AATGGTCGACGTTTACAGTGGCGTCTCCCTCATCAAGTTGTCTTGGACAATGAATCTGGT 424
                      ************************************************************

consensus_7254#0      TTAAACAATACTCAGNCACA--------- 638
consensus_7254#1      TTAAACAATACTCAGC-ACAGCCTCTGGA 452
                      ***************  ***