cluster # 7255

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Schistosoma mansoni
cluster # 7255 cluster # 7255 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7255#0 length = 410 sequences # 4

consensus_7255#1 length = 322 sequences # 1

consensusID : consensus_7255#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 410
fasta sequence

                              [TCAATGGAGCTGTACCAACAGTTCCTTCTGACTGAAGATATTCTCAAGAATATCATAAATGATGCAAAACAAAACATCCAAGCGACATTCAAAGAAATTACTGCTGCTTTGGGAGGCATTGAAACCAGTGTGGATGACGGTGTTTTGAGTGAAGACCTTGAGAAACAGATTGAAAAAACTGAAGACCTCCTGTTAAAGCCAGTGGTTGGTCAAAAGCGAAAAGTGAAAACGAGCATTCACTCCGCAAGATGTGAACACAGTCCTCTAAACCGTTCGAAATTAAACCAGGTAGTGGACTCGCATAAATCGCCGGCTAAGTTGTTAAAGAACTCCAGAAAGTTAAGTAAGCAGTTGCGTAGTGCGAAAGACAGTCCGAAACAAACGGAACCTCAAAATATCTTTCAGCCGAG]

[+] EMBL CD096550             [TCAATGGAGCTGTACCAACAGTTCCTTCTGACTGAAGATATTCTCAAGAATATCATAAATGATGCAAAACAAAACATCCAAGCGACATTCAAAGAAATTACTGCTGCTTTGGGAGGCATTGAAACCAGTGTGGATGACGGTGTTTTGAGTGAAGACCTTGAGAAACAGATTGAAAAAACTGAAGACCTCCTGTTAAAGCCAGTGGTTGGTCAAAAGCGAAAAGTGAAAACGAGCATTCACTCCGCAAGATGTGAACACAGTCCTCTAAACCGTTCGAAATTAAACCAGGTAGTGGACTCGCATAAATCGCCGGCTAAGTTGTTAAAGAACTCCAGAAAGTTAAGTAAGCAGTTGCGTAGTGCGAAAGACAGTCCGAAACAAACGGAACCTCAAAATATCTTTCAGCCGAG]
[+] EMBL CD096623             [TCAATGGAGCTGTACCAACAGTTCCTTCTGACTGAAGATATTCTCAAGAATATCATAAATGATGCAAAACAAAACATCCAAGCGACATTCAAAGAAATTACTGCTGCTTTGGGAGGCATTGAAACCAGTGTGGATGACGGTGTTTTGAGTGAAGACCTTGAGAAACAGATTGAAAAAACTGAAGACCTCCTGTTAAAGCCAGTGGTTGGTCAAAAGCGAAAAGTGAAAACGAGCATTCACTCCGCAAGATGTGAACACAGTCCTCTAAACCGTTCGAAATTAAACCAGGTAGTGGACTCGCATAAATCGCCGGCTAAGTTGTTAAAGAACTCCAGAAAGTTAAGTAAGCAGTTGCGTAGTGCGAAAGACAGTCCGAAACAAACGGAACCTCAAAATATCTTTCAGCCGAG]
[+] EMBL CD096640             [TCAATGGAGCTGTACCAACAGTTCCTTCTGACTGAAGATATTCTCAAGAATATCATAAATGATGCAAAACAAAACATCCAAGCGACATTCAAAGAAATTACTGCTGCTTTGGGAGGCATTGAAACCAGTGTGGATGACGGTGTTTTGAGTGAAGACCTTGAGAAACAGATTGAAAAAACTGAAGACCTCCTGTTAAAGCCAGTGGTTGGTCAAAAGCGAAAAGTGAAAACGAGCATTCACTCCGCAAGATGTGAACACAGTCCTCTAAACCGTTCGAAATTAAACCAGGTAGTGGACTCGCATAAATCGCCGGCTAAGTTGTTAAAGAACTCCAGAAAGTTAAGTAAGCAGTTGCGTAGTGCGAAAGACAGTCCGAAACAAACGGAACCTCAAAATATCTTTCAGCCGAG]
[-] EMBL CD096511             [ CAATGGAGCTGTACCAACAGTTCCTTCTGACTGAAGATATTCTCAAGAATATCATAAATGATGCAAAACAAAACATCCAAGCGACATTCAAAGAAATTACTGCTGCTTTGGGAGGCATTGAAACCAGTGTGGATGACGGTGTTTTGAGTGAAGACCTTGAGAAACAGATTGAAAACACTGAAGACCTCCTGTTAAAGCCAGTGGTTG                                                                                                                                                                                                          ]




>consensus_7255#0
TCAATGGAGCTGTACCAACAGTTCCTTCTGACTGAAGATATTCTCAAGAATATCATAAAT
GATGCAAAACAAAACATCCAAGCGACATTCAAAGAAATTACTGCTGCTTTGGGAGGCATT
GAAACCAGTGTGGATGACGGTGTTTTGAGTGAAGACCTTGAGAAACAGATTGAAAAAACT
GAAGACCTCCTGTTAAAGCCAGTGGTTGGTCAAAAGCGAAAAGTGAAAACGAGCATTCAC
TCCGCAAGATGTGAACACAGTCCTCTAAACCGTTCGAAATTAAACCAGGTAGTGGACTCG
CATAAATCGCCGGCTAAGTTGTTAAAGAACTCCAGAAAGTTAAGTAAGCAGTTGCGTAGT
GCGAAAGACAGTCCGAAACAAACGGAACCTCAAAATATCTTTCAGCCGAG

consensusID : consensus_7255#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 322
fasta sequence

                              [CAATGGAGCTGTACCAACAGTTCCTTCTGACTGAAGATATTCTCAAGAGTATCATAAATGATGCAAAACAAAACATCCAAGCGACATTCAAAGAAACCAGTGTGGATGACGGTGTTTTGAGTGAAGACCTTGAGAAACAGATTGAAAAAACTGAAGACCTCCTGTTAAAGCCAGTGGTTGGTCAAAAGCGAAAAGTGAAAACGAGCATTCACTCCGCAAGATGTGAACACAGTCCTCTAAACCGTTCGAAATTAAACCAGGTAGTGGACTCGCATAAATCGCCGGCTAAGTTGTTAAAGAACTCCAGAAAGTTAAGTAAGCA]

[-] EMBL CD147086             [CAATGGAGCTGTACCAACAGTTCCTTCTGACTGAAGATATTCTCAAGAGTATCATAAATGATGCAAAACAAAACATCCAAGCGACATTCAAAGAAACCAGTGTGGATGACGGTGTTTTGAGTGAAGACCTTGAGAAACAGATTGAAAAAACTGAAGACCTCCTGTTAAAGCCAGTGGTTGGTCAAAAGCGAAAAGTGAAAACGAGCATTCACTCCGCAAGATGTGAACACAGTCCTCTAAACCGTTCGAAATTAAACCAGGTAGTGGACTCGCATAAATCGCCGGCTAAGTTGTTAAAGAACTCCAGAAAGTTAAGTAAGCA]




>consensus_7255#1
CAATGGAGCTGTACCAACAGTTCCTTCTGACTGAAGATATTCTCAAGAGTATCATAAATG
ATGCAAAACAAAACATCCAAGCGACATTCAAAGAAACCAGTGTGGATGACGGTGTTTTGA
GTGAAGACCTTGAGAAACAGATTGAAAAAACTGAAGACCTCCTGTTAAAGCCAGTGGTTG
GTCAAAAGCGAAAAGTGAAAACGAGCATTCACTCCGCAAGATGTGAACACAGTCCTCTAA
ACCGTTCGAAATTAAACCAGGTAGTGGACTCGCATAAATCGCCGGCTAAGTTGTTAAAGA
ACTCCAGAAAGTTAAGTAAGCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7255#0      TCAATGGAGCTGTACCAACAGTTCCTTCTGACTGAAGATATTCTCAAGAATATCATAAAT 60
consensus_7255#1      -CAATGGAGCTGTACCAACAGTTCCTTCTGACTGAAGATATTCTCAAGAGTATCATAAAT 59
                       ************************************************ **********

consensus_7255#0      GATGCAAAACAAAACATCCAAGCGACATTCAAAGAAATTACTGCTGCTTTGGGAGGCATT 120
consensus_7255#1      GATGCAAAACAAAACATCCAAGCGACATTCAAAGAAA----------------------- 96
                      *************************************                       

consensus_7255#0      GAAACCAGTGTGGATGACGGTGTTTTGAGTGAAGACCTTGAGAAACAGATTGAAAAAACT 180
consensus_7255#1      ----CCAGTGTGGATGACGGTGTTTTGAGTGAAGACCTTGAGAAACAGATTGAAAAAACT 152
                          ********************************************************

consensus_7255#0      GAAGACCTCCTGTTAAAGCCAGTGGTTGGTCAAAAGCGAAAAGTGAAAACGAGCATTCAC 240
consensus_7255#1      GAAGACCTCCTGTTAAAGCCAGTGGTTGGTCAAAAGCGAAAAGTGAAAACGAGCATTCAC 212
                      ************************************************************

consensus_7255#0      TCCGCAAGATGTGAACACAGTCCTCTAAACCGTTCGAAATTAAACCAGGTAGTGGACTCG 300
consensus_7255#1      TCCGCAAGATGTGAACACAGTCCTCTAAACCGTTCGAAATTAAACCAGGTAGTGGACTCG 272
                      ************************************************************

consensus_7255#0      CATAAATCGCCGGCTAAGTTGTTAAAGAACTCCAGAAAGTTAAGTAAGCAGTTGCGTAGT 360
consensus_7255#1      CATAAATCGCCGGCTAAGTTGTTAAAGAACTCCAGAAAGTTAAGTAAGCA---------- 322
                      **************************************************          

consensus_7255#0      GCGAAAGACAGTCCGAAACAAACGGAACCTCAAAATATCTTTCAGCCGAG 410
consensus_7255#1      --------------------------------------------------