These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7260#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 603 fasta sequence [CGATAATCTTCCCGAACCTGGATCAAGTATAACGGCTTATTGTTCTGACACCCTAATACGAGGAGATGTTCTATGTGTAGATGCATCTAAAAAGCTGATCGTTCTGCAGAAGCCCTCAAGTATCGGCAGGCCTGACGAGTGTGACATACTTATTCTACGCGCTGATTACCTTAGAGATCTAAAGAGCACCAAAGAAGGGTCTCCACCAGCCTGTCCTGAACTAAATATTGAAAAGATAATTGAGCGTATTCGAGTTAACGAACGTATTCAAAAGGAAAAGCTGAAGTTTTATGGCCACGATGTCCCCGTGGATGCTCGTAAACTTGCCGAATACCTGGAAACGTACATTATCAGTCGACTTCCTAGATATGATTAATTAGTTTTTTCACTGTAGTTTGGGATAAGCCACATGTTGTTGTAATGGATCATACAATCATCAGCCCTCCCTATAAGGAAAACAATGTGTCTTGTAATTCAGACGCACAACAGGCCAAATCACAAACAGATTATGTACAGAGAGTGGTTAGTCGGTTTTATCAAGAACGTGTCACGGATAATAGGAGTGGAAATTGACCTAACTCCCCTTTCAGAAAATATACCATA] [+] EMBL CD081951 [CGATAATCTTCCCGAACCTGGATCAAGTATAACGGCTTATTGTTCTGACACCCTAATACGAGGAGATGTTCTATGTGTAGATGCATCTAAAAAGCTGATCGTTCTGCAGAAGCCCTCAAGTATCGGCAGGCCTGACGAGTGTGACATACTTATTCTACGCGCTGATTACCTTAGAGATCTAAAGAGCACCAAAGAAGGGTCTCCACCAGCCTGTCCTGAACTAAATATTGAAAAGATAATTGAGCGTATTCGAGTTAACGAACGTATTCAAAAGGAAAAGCTGAAGTTTTATGGCCACGATGTCCCCGTGGATGCTCGTAAACTTGCCGAATACCTGGAAACGTACATTATCAGTCGACTTCCTAGATATGATTAATTAGTTTTTTCACTGTAGTTTGGGATAAGCCACATGTTGTTGTAATGGATCATACAATCATCAGCCCTCCCTATAAGGAAAACAATGTGTCTTGTAATTCAGACGCACAACAGGCCAAATCACAAACAGATTATGTACAGAGAGTGGTTAGTCGGTTTTATCAAGAACGTGTCACGGATAATAGGAGTGGAAATTGACCTAACTCCCCTTTCAGAAAATATACCATA] consensusID : consensus_7260#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 501 fasta sequence [ATGACAGTCGATAATCTTCCCGAACCTGGATCAAGTA-TAACGGCTTA-TTGTTCTGACACCCTAATACGAGGAGATGTTCTATGTGTAGATGCATCTAAAAAGCTGATCGTTCTGCAGAAGCCCTCAAGTATCGGCAGGCCTGACGAGTGTGACATACTTATTCTACGCGCTGATTACCTTAGAGATCTAAAGAGCACCAAAGAAGGGTCTCCACCAGCCTGTCCTGAACTAAATATTGAAAAGATAATTGAGCGTATTCGAGTTAACGAACGTATTCAAAAGGAAAAGCTGAAGTTTTATGGCCACGATGTCCCCGTGGATGCTCGTAAACTTGCCGAATACCTGGAAACTTTTTTCACTGTAGTTTGGGATAAGCCACATGTTGTTGTAATGGATCATACAATCATCAGCCCTCCCTATAAGGAAAACAATGTGTCTTGTAATTCAGACGCACAACAGGCCAAATCACAAACAGATTATGTACAGAGAGTGGTTAGTCGG] [+] EMBL CD191713 [ATGACAGTCGATAATCTTCCCGAACCTGGATCAAGTA TAACGGCTTA TTGTTCTGACACCCTAATACGAGGAGATGTTCTATGTGTAGATGCATCTAAAAAGCTGATCGTTCTGCAGAAGCCCTCAAGTATCGGCAGGCCTGACGAGTGTGACATACTTATTCTACGCGCTGATTACCTTAGAGATCTAAAGAGCACCAAAGAAGGGTCTCCACCAGCCTGTCCTGAACTAAATATTGAAAAGATAATTGAGCGTATTCGAGTTAACGAACGTATTCAAAAGGAAAAGCTGAAGTTTTATGGCCACGATGTCCCCGTGGATGCTCGTAAACTTGCCGAATACCTGGAAACTTTTTTCACTGTAGTTTGGGATAAGCCACATGTTGTTGTAATGGATCATACAATCATCAGCCCTCCCTATAAGGAAAACAATGTGTCTTGTAATTCAGACGCACAACAGGCCAAATCACAAACAGATTATGTACAGAGAGTGGTTAGTCGG] [-] EMBL CD135597 [ GATAATCTTCCCGAACCTGGATCAAGTA TAACGGCTTA TTGTTCTGACACCCTAATACGAGGAGATGTTCTATGTGTAGATGCATCTAAAAAGCTGATCGTTCTGCAGAAGCCCTCAAGTATCGGCAGGCCTGACGAGTGTGACATACTTATTCTACGCGCTGATTACCTTAGAGATCTAAAGAGCACCAAAGAAGGGTCTCCACCAGCCTGTCCTGAACTAAATATTGAAAAGATAATTGAGCGTATTCGAGTTAACGAACGTATTCAAAAGGAAAAGCTGAAGTTTT ] [+] EMBL SMAA25611 [ ataAATCTTCCCGAACCTGGATCAAGTATTAACGGCTTATTTGTTCTGACACCCTAATACGAGGAGATGTTCTATGTGTAGATGCATCTAAAAGGCTGATCGTTCTGCAGAAGCCCTCAAGTATCGGCAGGCCTGACGAGTGTGACATACTTATTCTACGCGCTGATTACCTTAGAGATCTAAAGAGCACCAAAGAAGGGTCTCCACCAGCCTGTCCTGAACTAAATATTGAAAAGATAATTGAGCGTATTCGAGTTAACGAACGTATTCAAAAGGAAAAGCTGAAGTTTTATGGCCACGATGTCCCCGTGGATGCTCGTAAACTTGCCGAATACCTGGAAACTTTTTTCACTGTAGTTTGGGATAAGCCACATGTTGTTGTA ] [+] EMBL CD092564 [ ACTTATTCTACGCGCTGATTACCTTAGAGATCTAAAGAGCACCAAAGAAGGGTCTCCACCAGCCTGTCCTGAACTAAATATTGAAAAGATAATTGAGCGTATTCGAGTTTACGAACGTATTCAAAAGGAAAAGCTGAAGTTTTATGGCCACGATGTCC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7260#0 --------CGATAATCTTCCCGAACCTGGATCAAGTATAACGGCTTATTGTTCTGACACC 52 consensus_7260#1 ATGACAGTCGATAATCTTCCCGAACCTGGATCAAGTATAACGGCTTATTGTTCTGACACC 60 **************************************************** consensus_7260#0 CTAATACGAGGAGATGTTCTATGTGTAGATGCATCTAAAAAGCTGATCGTTCTGCAGAAG 112 consensus_7260#1 CTAATACGAGGAGATGTTCTATGTGTAGATGCATCTAAAAAGCTGATCGTTCTGCAGAAG 120 ************************************************************ consensus_7260#0 CCCTCAAGTATCGGCAGGCCTGACGAGTGTGACATACTTATTCTACGCGCTGATTACCTT 172 consensus_7260#1 CCCTCAAGTATCGGCAGGCCTGACGAGTGTGACATACTTATTCTACGCGCTGATTACCTT 180 ************************************************************ consensus_7260#0 AGAGATCTAAAGAGCACCAAAGAAGGGTCTCCACCAGCCTGTCCTGAACTAAATATTGAA 232 consensus_7260#1 AGAGATCTAAAGAGCACCAAAGAAGGGTCTCCACCAGCCTGTCCTGAACTAAATATTGAA 240 ************************************************************ consensus_7260#0 AAGATAATTGAGCGTATTCGAGTTAACGAACGTATTCAAAAGGAAAAGCTGAAGTTTTAT 292 consensus_7260#1 AAGATAATTGAGCGTATTCGAGTTAACGAACGTATTCAAAAGGAAAAGCTGAAGTTTTAT 300 ************************************************************ consensus_7260#0 GGCCACGATGTCCCCGTGGATGCTCGTAAACTTGCCGAATACCTGGAAACGTACATTATC 352 consensus_7260#1 GGCCACGATGTCCCCGTGGATGCTCGTAAACTTGCCGAATACCTGGAAAC---------- 350 ************************************************** consensus_7260#0 AGTCGACTTCCTAGATATGATTAATTAGTTTTTTCACTGTAGTTTGGGATAAGCCACATG 412 consensus_7260#1 ----------------------------TTTTTTCACTGTAGTTTGGGATAAGCCACATG 382 ******************************** consensus_7260#0 TTGTTGTAATGGATCATACAATCATCAGCCCTCCCTATAAGGAAAACAATGTGTCTTGTA 472 consensus_7260#1 TTGTTGTAATGGATCATACAATCATCAGCCCTCCCTATAAGGAAAACAATGTGTCTTGTA 442 ************************************************************ consensus_7260#0 ATTCAGACGCACAACAGGCCAAATCACAAACAGATTATGTACAGAGAGTGGTTAGTCGGT 532 consensus_7260#1 ATTCAGACGCACAACAGGCCAAATCACAAACAGATTATGTACAGAGAGTGGTTAGTCGG- 501 *********************************************************** consensus_7260#0 TTTATCAAGAACGTGTCACGGATAATAGGAGTGGAAATTGACCTAACTCCCCTTTCAGAA 592 consensus_7260#1 ------------------------------------------------------------ consensus_7260#0 AATATACCATA 603 consensus_7260#1 ----------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||