These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7262#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1201 fasta sequence [CGCGCGAATTCAACAGCACCATCTTATGGATGATTTTTTGACATTTGATGATGGCTTATTTGAGTCCAATGAGCGCACAAAAGGTTTGTTACCTGTCTTTCATCCAAATGAAGTGGGAAATCTAGAATTTTTATCAGGTAGTGGAGTGGAGTGTTTGAAGTCTTCAAGCGATTGGTTTTATTTATCAAAGAAGTACGACGATTGTCTGGAGTATTTGCTTCAACTATGGGACCGTGGTCATAGTTACAATGGATTTCCTAAAAGAATTATTGCTGATGCGATTGTTAGATGCTATTTGAAACTGAACAAGCAGTGTGAACTGCTTCCTTATCTCCAACAGCACAGCCAATTGTCAGTAAGCTATGAGGATTATATCGGACACTTGATGCTTCATTTTACTTGTTCAATAAACGAAACAACGCAAGGTCAAATTAATTTACTCCAACGTATTCTATTGGCACTTCCGCCATCATTTGTTGATGACTCATCAACATTTATTTGTAAAAATCTATTTACACAGTCTCAGTTATGGATCGACTTGTCAGTTGCTTGGGATCAAATGGAGACAGAGACTAGGACAATGTTTTATCCTGTATGGTTTTCTAAGGTAGCACTATTGTATGCTGAGCTTGTCAATACTAATCCAAAATTAAATGAAACTTCACTTACATGGACNNTGAT-AAGTTCTTAATCCAATACAAATCGAAATATGCCATAAACTATCATTACGTATTTTAACTACATGTAGCAGTAGTGGTAGTTCTTCAACAAACCCATCTTCTACTACTACAATGGTAGATAAAGATAACGGTGCATATAGTCACGAAAATAATGTACAATTCAATGACGTTACTGTTACTCATGTATTACCGTATATTCCTAGTCAGAAATGCTGTTCTATTGATACTACTGTAGACACTAACAATCAAGATGAAGTCGGACACGTGTTCTTCCAATTGTTTGTTGCTCCATTCATGAATATTTATGAAAAGTCAATTTAGAAAACACCAGCATTTTTGCAATTGTTTTACATTCATTTGTAATTGTAAAGAAAGCTCCCGTTTTTTCCAAAAAGTCTATTTTGTTAGCTGATCAGCCACTTTGATTTAGATTTTGTTGATAATCAGTGTAAATGTGTGTTTGCCCAAAATTCTTTTTTTGCATTTCAAGCATTACCAGACACTTTTAAAAAACAATCATG] [+] EMBL CD080640 [CGCGCGAATTCAACAGCACCATCTTATGGATGATTTTTTGACATTTGATGATGGCTTATTTGAGTCCAATGAGCGCACAAAAGGTTTGTTACCTGTCTTTCATCCAAATGAAGTGGGAAATCTAGAATTTTTATCAGGTAGTGGAGTGGAGTGTTTGAAGTCTTCAAGCGATTGGTTTTATTTATCAAAGAAGTACGACGATTGTCTGGAGTATTTGCTTCAACTATGGGACCGTGGTCATAGTTACAATGGATTTCCTAAAAGAATTATTGCTGATGCGATTGTTAGATGCTATTTGAAACTGAACAAGCAGTGTGAACTGCTTCCTTATCTCCAACAGCACAGCCAATTGTCAGTAAGCTATGAGGATTATATCGGACACTTGATGCTTCATTTTACTTGTTCAATAAACGAAACAACGCAAGGTCAAATTAATTTACTCCAACGTATTCTATTGGCACTTCCGCCATCATTTGTTGATGACTCATCAACATTTATTTGTAAAAATCTATTTACACAGTCTCAGTTATGGATCGACTTGTCAGTTGCTTGGGATCAAATGGAGACAGAGACTAGGACAATGTTTTATCCTGTATGGTTTTCTAAGGTAGCACTATTGTATGCTGAGCTTGTCAATACTAATCCAAAATTAAATGAAACTTCACTTACATGGACNNTGAT AAGTTCTTAATCCAA ] [+] EMBL CD159248 [ CGAATTCAACAGCACCATCTTATGGATGATTTTTTGACATTTGATGATGGCTTATTTGAGTCCAATGAGCGCACAAAAGGTTTGTTACCTGTCTTTCATCCAAATGAAGTGGGAAATCTAGAATTTTTATCAGGTAGTGGAGTGGAGTGTTTGAAGTCTTCAAGCGATTGGTTTTATTTATCAAAGAAGTACGACGATTGTCTGGAGTATTTGCTTCAACTATGGGACCGTGGTCATAGTTACAATGGATTTCCTAAAAGAATTATTGCTGATGCGATTGTTAGATGCTATTTGAAACTGAACAAGCAGTGTGAACTGCT ] [-] EMBL CD074553 [ TTATGGATCGACTGNTCAG TGCTTGGGATCAAATGGAGACAGAGACTAGGACAATGTTTTATCCTGTATGGTTTTCTAAGGTAGCACTATTGTATGCTGAGCTTGTCAATACTAATCCAAAATTAAATGAAACTTCACTTACATGGAC TGATAAAGTTCTTAATCCAATACAAATCGAAATATGCCATAAACTATCATTACGTATTTTAACTACATGTAGCAGTAGTGGTAGTTCTTCAACAAACCCATCTTCTACTACTACAATGGTAGATAAAGATAACGGTGCATATAGTCACGAAAATAATGTACAATTCAATGACGTTACTGTTACTCATGTATTACCGTATATTCCTAGTCAGAAATGCTGTTCTATTGATACTACTGTAGACACTAACAATCAAGATGAAGTCGGACACGTGTTCTTCCAATTGTTTGTTGCTCCATTCATGAATATTTATGAAAAGTCAATTTAGAAAACACCAGCATTTTTGCAATTGTTTTACATTCATTTGTAATTGTAAAGAAAGCTCCCGTTTTTTCCAAAAAGTCTATTTTGTTAGCTGATCAGCCACTTTGATTTAGATTTTGTTGATAATCAGTGTAAATGTGTGTTTGCCCAAAATTCTTTTTTTGCATTTCAAGCATTACCAGACACTTTTAAAAAACAATCATG] [-] EMBL BF936306 [ GTTCTTCAACAAACCCATCTTCTACTACTACAATGGTAGATAAAGATAACGGTGCATATAGTCACGAAAATAATGTACAATTCAATGACGTTACTGTTACTCATGTATTACCGTATATTCCTAGTCAGAAATGCTGTTCTATTGATACTACTGTAGACACTAACAATCAAGATGAAGTCGGACACGTGTTCTTCCAATTGTTTGTTGCTCCATTCATGAATATTTATGAAAAGTCAATTTAGAAAACACCAGCATTTTTGCAATTGTTTTACATTCATTTGTAATTGTAAAGAAAGCTCCCGTTTTTTCCAAAAAGTCTATTT ] consensusID : consensus_7262#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 347 fasta sequence [AACTCTCATAGATATAACAATAAATAACTGTTTAGAGGTTAATCCGCTTGCTTAGTGGGATAAAATTATCTTTACATATTTCCCCTTTAAAGCTGTATTTCGATGACTCCTAGACATTCATAGTTTAGGTGTTGGCGTAGAGTATGAGTTCTGTTTACTTTGTGTTTGGGTTTCCCTCTTATTTTATACACAGGTCAAATTAATTTACTCCAACGTATTCTATTGGCACTTCCGCCATCATTTGTTGATGACTCATCAACATTTATTTGTAAAAATCTATTTACACAGTCTCAGTTATGGATCGACTTGTCAGTTGCTTGGGATCAAATGGAGACAGAGACTAGGAC] [-] EMBL CD095637 [AACTCTCATAGATATAACAATAAATAACTGTTTAGAGGTTAATCCGCTTGCTTAGTGGGATAAAATTATCTTTACATATTTCCCCTTTAAAGCTGTATTTCGATGACTCCTAGACATTCATAGTTTAGGTGTTGGCGTAGAGTATGAGTTCTGTTTACTTTGTGTTTGGGTTTCCCTCTTATTTTATACACAGGTCAAATTAATTTACTCCAACGTATTCTATTGGCACTTCCGCCATCATTTGTTGATGACTCATCAACATTTATTTGTAAAAATCTATTTACACAGTCTCAGTTATGGATCGACTTGTCAGTTGCTTGGGATCAAATGGAGACAGAGACTAGGAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7262#0 CGCGCGAATTCAACAGCACCATCTTATGGATGATTTTTTGACATTTGATGATGGCTTATT 60 consensus_7262#1 ------------------------------------------------------------ consensus_7262#0 TGAGTCCAATGAGCGCACAAAAGGTTTGTTACCTGTCTTTCATCCAAATGAAGTGGGAAA 120 consensus_7262#1 ------------------------------------------------------------ consensus_7262#0 TCTAGAATTTTTATCAGGTAGTGGAGTGGAGTGTTTGAAGTCTTCAAGCGATTGGTTTTA 180 consensus_7262#1 ------------------------------------------------------------ consensus_7262#0 TTTATCAAAGAAGTACGACGATTGTCTGGAGTATTTGCTTCAACTATGGGACCGTGGTCA 240 consensus_7262#1 -------------------AACTCTCATAGATAT-------AACAATAAATAACTGTTTA 34 * * ** *** *** ** ** * * consensus_7262#0 TAGTTACAATGGATTTCCTAAAAGAATTATTGCTGATGCGATTGTTAGATGCTATTTGAA 300 consensus_7262#1 GAGGTTAATCCGCTTGCTTAGTGGGAT-------AAAATTATCTTTACATATT--TCCCC 85 ** * * * ** * ** * ** * ** *** ** * * consensus_7262#0 ACTGAACAAGCAGTGTGAACTGCTTCCTTATCTCCAACAGCACAGCCAATTGTCAGTAAG 360 consensus_7262#1 TTTAAAGCTGTATTTCGA--TGACTCCTAGACATTCATAGTTTAGGTGTTGGC--GTAGA 141 * ** * * * ** ** **** * * ** ** * * *** consensus_7262#0 CTATGAGGATTATATCGGACACTTGATGCTTCATTTTACTTGTTCAATAAACGAAACAAC 420 consensus_7262#1 GTATGAGTTCTGTTT-----ACTTTGTGTTTGGGTTTCCCTCT----TATTTTATACAC- 191 ****** * * * **** ** ** *** * * * ** * *** consensus_7262#0 GCAAGGTCAAATTAATTTACTCCAACGTATTCTATTGGCACTTCCGCCATCATTTGTTGA 480 consensus_7262#1 ---AGGTCAAATTAATTTACTCCAACGTATTCTATTGGCACTTCCGCCATCATTTGTTGA 248 ********************************************************* consensus_7262#0 TGACTCATCAACATTTATTTGTAAAAATCTATTTACACAGTCTCAGTTATGGATCGACTT 540 consensus_7262#1 TGACTCATCAACATTTATTTGTAAAAATCTATTTACACAGTCTCAGTTATGGATCGACTT 308 ************************************************************ consensus_7262#0 GTCAGTTGCTTGGGATCAAATGGAGACAGAGACTAGGACAATGTTTTATCCTGTATGGTT 600 consensus_7262#1 GTCAGTTGCTTGGGATCAAATGGAGACAGAGACTAGGAC--------------------- 347 *************************************** consensus_7262#0 TTCTAAGGTAGCACTATTGTATGCTGAGCTTGTCAATACTAATCCAAAATTAAATGAAAC 660 consensus_7262#1 ------------------------------------------------------------ consensus_7262#0 TTCACTTACATGGACNNTGATAAGTTCTTAATCCAATACAAATCGAAATATGCCATAAAC 720 consensus_7262#1 ------------------------------------------------------------ consensus_7262#0 TATCATTACGTATTTTAACTACATGTAGCAGTAGTGGTAGTTCTTCAACAAACCCATCTT 780 consensus_7262#1 ------------------------------------------------------------ consensus_7262#0 CTACTACTACAATGGTAGATAAAGATAACGGTGCATATAGTCACGAAAATAATGTACAAT 840 consensus_7262#1 ------------------------------------------------------------ consensus_7262#0 TCAATGACGTTACTGTTACTCATGTATTACCGTATATTCCTAGTCAGAAATGCTGTTCTA 900 consensus_7262#1 ------------------------------------------------------------ consensus_7262#0 TTGATACTACTGTAGACACTAACAATCAAGATGAAGTCGGACACGTGTTCTTCCAATTGT 960 consensus_7262#1 ------------------------------------------------------------ consensus_7262#0 TTGTTGCTCCATTCATGAATATTTATGAAAAGTCAATTTAGAAAACACCAGCATTTTTGC 1020 consensus_7262#1 ------------------------------------------------------------ consensus_7262#0 AATTGTTTTACATTCATTTGTAATTGTAAAGAAAGCTCCCGTTTTTTCCAAAAAGTCTAT 1080 consensus_7262#1 ------------------------------------------------------------ consensus_7262#0 TTTGTTAGCTGATCAGCCACTTTGATTTAGATTTTGTTGATAATCAGTGTAAATGTGTGT 1140 consensus_7262#1 ------------------------------------------------------------ consensus_7262#0 TTGCCCAAAATTCTTTTTTTGCATTTCAAGCATTACCAGACACTTTTAAAAAACAATCAT 1200 consensus_7262#1 ------------------------------------------------------------ consensus_7262#0 G 1201 consensus_7262#1 - |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||