cluster # 7262

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Schistosoma mansoni
cluster # 7262 cluster # 7262 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7262#0 length = 1201 sequences # 4

consensus_7262#1 length = 347 sequences # 1

consensusID : consensus_7262#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1201
fasta sequence

                              [CGCGCGAATTCAACAGCACCATCTTATGGATGATTTTTTGACATTTGATGATGGCTTATTTGAGTCCAATGAGCGCACAAAAGGTTTGTTACCTGTCTTTCATCCAAATGAAGTGGGAAATCTAGAATTTTTATCAGGTAGTGGAGTGGAGTGTTTGAAGTCTTCAAGCGATTGGTTTTATTTATCAAAGAAGTACGACGATTGTCTGGAGTATTTGCTTCAACTATGGGACCGTGGTCATAGTTACAATGGATTTCCTAAAAGAATTATTGCTGATGCGATTGTTAGATGCTATTTGAAACTGAACAAGCAGTGTGAACTGCTTCCTTATCTCCAACAGCACAGCCAATTGTCAGTAAGCTATGAGGATTATATCGGACACTTGATGCTTCATTTTACTTGTTCAATAAACGAAACAACGCAAGGTCAAATTAATTTACTCCAACGTATTCTATTGGCACTTCCGCCATCATTTGTTGATGACTCATCAACATTTATTTGTAAAAATCTATTTACACAGTCTCAGTTATGGATCGACTTGTCAGTTGCTTGGGATCAAATGGAGACAGAGACTAGGACAATGTTTTATCCTGTATGGTTTTCTAAGGTAGCACTATTGTATGCTGAGCTTGTCAATACTAATCCAAAATTAAATGAAACTTCACTTACATGGACNNTGAT-AAGTTCTTAATCCAATACAAATCGAAATATGCCATAAACTATCATTACGTATTTTAACTACATGTAGCAGTAGTGGTAGTTCTTCAACAAACCCATCTTCTACTACTACAATGGTAGATAAAGATAACGGTGCATATAGTCACGAAAATAATGTACAATTCAATGACGTTACTGTTACTCATGTATTACCGTATATTCCTAGTCAGAAATGCTGTTCTATTGATACTACTGTAGACACTAACAATCAAGATGAAGTCGGACACGTGTTCTTCCAATTGTTTGTTGCTCCATTCATGAATATTTATGAAAAGTCAATTTAGAAAACACCAGCATTTTTGCAATTGTTTTACATTCATTTGTAATTGTAAAGAAAGCTCCCGTTTTTTCCAAAAAGTCTATTTTGTTAGCTGATCAGCCACTTTGATTTAGATTTTGTTGATAATCAGTGTAAATGTGTGTTTGCCCAAAATTCTTTTTTTGCATTTCAAGCATTACCAGACACTTTTAAAAAACAATCATG]

[+] EMBL CD080640             [CGCGCGAATTCAACAGCACCATCTTATGGATGATTTTTTGACATTTGATGATGGCTTATTTGAGTCCAATGAGCGCACAAAAGGTTTGTTACCTGTCTTTCATCCAAATGAAGTGGGAAATCTAGAATTTTTATCAGGTAGTGGAGTGGAGTGTTTGAAGTCTTCAAGCGATTGGTTTTATTTATCAAAGAAGTACGACGATTGTCTGGAGTATTTGCTTCAACTATGGGACCGTGGTCATAGTTACAATGGATTTCCTAAAAGAATTATTGCTGATGCGATTGTTAGATGCTATTTGAAACTGAACAAGCAGTGTGAACTGCTTCCTTATCTCCAACAGCACAGCCAATTGTCAGTAAGCTATGAGGATTATATCGGACACTTGATGCTTCATTTTACTTGTTCAATAAACGAAACAACGCAAGGTCAAATTAATTTACTCCAACGTATTCTATTGGCACTTCCGCCATCATTTGTTGATGACTCATCAACATTTATTTGTAAAAATCTATTTACACAGTCTCAGTTATGGATCGACTTGTCAGTTGCTTGGGATCAAATGGAGACAGAGACTAGGACAATGTTTTATCCTGTATGGTTTTCTAAGGTAGCACTATTGTATGCTGAGCTTGTCAATACTAATCCAAAATTAAATGAAACTTCACTTACATGGACNNTGAT AAGTTCTTAATCCAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CD159248             [    CGAATTCAACAGCACCATCTTATGGATGATTTTTTGACATTTGATGATGGCTTATTTGAGTCCAATGAGCGCACAAAAGGTTTGTTACCTGTCTTTCATCCAAATGAAGTGGGAAATCTAGAATTTTTATCAGGTAGTGGAGTGGAGTGTTTGAAGTCTTCAAGCGATTGGTTTTATTTATCAAAGAAGTACGACGATTGTCTGGAGTATTTGCTTCAACTATGGGACCGTGGTCATAGTTACAATGGATTTCCTAAAAGAATTATTGCTGATGCGATTGTTAGATGCTATTTGAAACTGAACAAGCAGTGTGAACTGCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL CD074553             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TTATGGATCGACTGNTCAG TGCTTGGGATCAAATGGAGACAGAGACTAGGACAATGTTTTATCCTGTATGGTTTTCTAAGGTAGCACTATTGTATGCTGAGCTTGTCAATACTAATCCAAAATTAAATGAAACTTCACTTACATGGAC  TGATAAAGTTCTTAATCCAATACAAATCGAAATATGCCATAAACTATCATTACGTATTTTAACTACATGTAGCAGTAGTGGTAGTTCTTCAACAAACCCATCTTCTACTACTACAATGGTAGATAAAGATAACGGTGCATATAGTCACGAAAATAATGTACAATTCAATGACGTTACTGTTACTCATGTATTACCGTATATTCCTAGTCAGAAATGCTGTTCTATTGATACTACTGTAGACACTAACAATCAAGATGAAGTCGGACACGTGTTCTTCCAATTGTTTGTTGCTCCATTCATGAATATTTATGAAAAGTCAATTTAGAAAACACCAGCATTTTTGCAATTGTTTTACATTCATTTGTAATTGTAAAGAAAGCTCCCGTTTTTTCCAAAAAGTCTATTTTGTTAGCTGATCAGCCACTTTGATTTAGATTTTGTTGATAATCAGTGTAAATGTGTGTTTGCCCAAAATTCTTTTTTTGCATTTCAAGCATTACCAGACACTTTTAAAAAACAATCATG]
[-] EMBL BF936306             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GTTCTTCAACAAACCCATCTTCTACTACTACAATGGTAGATAAAGATAACGGTGCATATAGTCACGAAAATAATGTACAATTCAATGACGTTACTGTTACTCATGTATTACCGTATATTCCTAGTCAGAAATGCTGTTCTATTGATACTACTGTAGACACTAACAATCAAGATGAAGTCGGACACGTGTTCTTCCAATTGTTTGTTGCTCCATTCATGAATATTTATGAAAAGTCAATTTAGAAAACACCAGCATTTTTGCAATTGTTTTACATTCATTTGTAATTGTAAAGAAAGCTCCCGTTTTTTCCAAAAAGTCTATTT                                                                                                                       ]




>consensus_7262#0
CGCGCGAATTCAACAGCACCATCTTATGGATGATTTTTTGACATTTGATGATGGCTTATT
TGAGTCCAATGAGCGCACAAAAGGTTTGTTACCTGTCTTTCATCCAAATGAAGTGGGAAA
TCTAGAATTTTTATCAGGTAGTGGAGTGGAGTGTTTGAAGTCTTCAAGCGATTGGTTTTA
TTTATCAAAGAAGTACGACGATTGTCTGGAGTATTTGCTTCAACTATGGGACCGTGGTCA
TAGTTACAATGGATTTCCTAAAAGAATTATTGCTGATGCGATTGTTAGATGCTATTTGAA
ACTGAACAAGCAGTGTGAACTGCTTCCTTATCTCCAACAGCACAGCCAATTGTCAGTAAG
CTATGAGGATTATATCGGACACTTGATGCTTCATTTTACTTGTTCAATAAACGAAACAAC
GCAAGGTCAAATTAATTTACTCCAACGTATTCTATTGGCACTTCCGCCATCATTTGTTGA
TGACTCATCAACATTTATTTGTAAAAATCTATTTACACAGTCTCAGTTATGGATCGACTT
GTCAGTTGCTTGGGATCAAATGGAGACAGAGACTAGGACAATGTTTTATCCTGTATGGTT
TTCTAAGGTAGCACTATTGTATGCTGAGCTTGTCAATACTAATCCAAAATTAAATGAAAC
TTCACTTACATGGACNNTGATAAGTTCTTAATCCAATACAAATCGAAATATGCCATAAAC
TATCATTACGTATTTTAACTACATGTAGCAGTAGTGGTAGTTCTTCAACAAACCCATCTT
CTACTACTACAATGGTAGATAAAGATAACGGTGCATATAGTCACGAAAATAATGTACAAT
TCAATGACGTTACTGTTACTCATGTATTACCGTATATTCCTAGTCAGAAATGCTGTTCTA
TTGATACTACTGTAGACACTAACAATCAAGATGAAGTCGGACACGTGTTCTTCCAATTGT
TTGTTGCTCCATTCATGAATATTTATGAAAAGTCAATTTAGAAAACACCAGCATTTTTGC
AATTGTTTTACATTCATTTGTAATTGTAAAGAAAGCTCCCGTTTTTTCCAAAAAGTCTAT
TTTGTTAGCTGATCAGCCACTTTGATTTAGATTTTGTTGATAATCAGTGTAAATGTGTGT
TTGCCCAAAATTCTTTTTTTGCATTTCAAGCATTACCAGACACTTTTAAAAAACAATCAT
G

consensusID : consensus_7262#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 347
fasta sequence

                              [AACTCTCATAGATATAACAATAAATAACTGTTTAGAGGTTAATCCGCTTGCTTAGTGGGATAAAATTATCTTTACATATTTCCCCTTTAAAGCTGTATTTCGATGACTCCTAGACATTCATAGTTTAGGTGTTGGCGTAGAGTATGAGTTCTGTTTACTTTGTGTTTGGGTTTCCCTCTTATTTTATACACAGGTCAAATTAATTTACTCCAACGTATTCTATTGGCACTTCCGCCATCATTTGTTGATGACTCATCAACATTTATTTGTAAAAATCTATTTACACAGTCTCAGTTATGGATCGACTTGTCAGTTGCTTGGGATCAAATGGAGACAGAGACTAGGAC]

[-] EMBL CD095637             [AACTCTCATAGATATAACAATAAATAACTGTTTAGAGGTTAATCCGCTTGCTTAGTGGGATAAAATTATCTTTACATATTTCCCCTTTAAAGCTGTATTTCGATGACTCCTAGACATTCATAGTTTAGGTGTTGGCGTAGAGTATGAGTTCTGTTTACTTTGTGTTTGGGTTTCCCTCTTATTTTATACACAGGTCAAATTAATTTACTCCAACGTATTCTATTGGCACTTCCGCCATCATTTGTTGATGACTCATCAACATTTATTTGTAAAAATCTATTTACACAGTCTCAGTTATGGATCGACTTGTCAGTTGCTTGGGATCAAATGGAGACAGAGACTAGGAC]




>consensus_7262#1
AACTCTCATAGATATAACAATAAATAACTGTTTAGAGGTTAATCCGCTTGCTTAGTGGGA
TAAAATTATCTTTACATATTTCCCCTTTAAAGCTGTATTTCGATGACTCCTAGACATTCA
TAGTTTAGGTGTTGGCGTAGAGTATGAGTTCTGTTTACTTTGTGTTTGGGTTTCCCTCTT
ATTTTATACACAGGTCAAATTAATTTACTCCAACGTATTCTATTGGCACTTCCGCCATCA
TTTGTTGATGACTCATCAACATTTATTTGTAAAAATCTATTTACACAGTCTCAGTTATGG
ATCGACTTGTCAGTTGCTTGGGATCAAATGGAGACAGAGACTAGGAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7262#0      CGCGCGAATTCAACAGCACCATCTTATGGATGATTTTTTGACATTTGATGATGGCTTATT 60
consensus_7262#1      ------------------------------------------------------------
                                                                                  

consensus_7262#0      TGAGTCCAATGAGCGCACAAAAGGTTTGTTACCTGTCTTTCATCCAAATGAAGTGGGAAA 120
consensus_7262#1      ------------------------------------------------------------
                                                                                  

consensus_7262#0      TCTAGAATTTTTATCAGGTAGTGGAGTGGAGTGTTTGAAGTCTTCAAGCGATTGGTTTTA 180
consensus_7262#1      ------------------------------------------------------------
                                                                                  

consensus_7262#0      TTTATCAAAGAAGTACGACGATTGTCTGGAGTATTTGCTTCAACTATGGGACCGTGGTCA 240
consensus_7262#1      -------------------AACTCTCATAGATAT-------AACAATAAATAACTGTTTA 34
                                          * * **     ***       *** **       ** * *

consensus_7262#0      TAGTTACAATGGATTTCCTAAAAGAATTATTGCTGATGCGATTGTTAGATGCTATTTGAA 300
consensus_7262#1      GAGGTTAATCCGCTTGCTTAGTGGGAT-------AAAATTATCTTTACATATT--TCCCC 85
                       ** *  *   * ** * **   * **        *    **  *** **  *  *    

consensus_7262#0      ACTGAACAAGCAGTGTGAACTGCTTCCTTATCTCCAACAGCACAGCCAATTGTCAGTAAG 360
consensus_7262#1      TTTAAAGCTGTATTTCGA--TGACTCCTAGACATTCATAGTTTAGGTGTTGGC--GTAGA 141
                        * **   * * *  **  **  ****   *    * **   **    * *   ***  

consensus_7262#0      CTATGAGGATTATATCGGACACTTGATGCTTCATTTTACTTGTTCAATAAACGAAACAAC 420
consensus_7262#1      GTATGAGTTCTGTTT-----ACTTTGTGTTTGGGTTTCCCTCT----TATTTTATACAC- 191
                       ******   * * *     ****  ** **   *** * * *    **    * ***  

consensus_7262#0      GCAAGGTCAAATTAATTTACTCCAACGTATTCTATTGGCACTTCCGCCATCATTTGTTGA 480
consensus_7262#1      ---AGGTCAAATTAATTTACTCCAACGTATTCTATTGGCACTTCCGCCATCATTTGTTGA 248
                         *********************************************************

consensus_7262#0      TGACTCATCAACATTTATTTGTAAAAATCTATTTACACAGTCTCAGTTATGGATCGACTT 540
consensus_7262#1      TGACTCATCAACATTTATTTGTAAAAATCTATTTACACAGTCTCAGTTATGGATCGACTT 308
                      ************************************************************

consensus_7262#0      GTCAGTTGCTTGGGATCAAATGGAGACAGAGACTAGGACAATGTTTTATCCTGTATGGTT 600
consensus_7262#1      GTCAGTTGCTTGGGATCAAATGGAGACAGAGACTAGGAC--------------------- 347
                      ***************************************                     

consensus_7262#0      TTCTAAGGTAGCACTATTGTATGCTGAGCTTGTCAATACTAATCCAAAATTAAATGAAAC 660
consensus_7262#1      ------------------------------------------------------------
                                                                                  

consensus_7262#0      TTCACTTACATGGACNNTGATAAGTTCTTAATCCAATACAAATCGAAATATGCCATAAAC 720
consensus_7262#1      ------------------------------------------------------------
                                                                                  

consensus_7262#0      TATCATTACGTATTTTAACTACATGTAGCAGTAGTGGTAGTTCTTCAACAAACCCATCTT 780
consensus_7262#1      ------------------------------------------------------------
                                                                                  

consensus_7262#0      CTACTACTACAATGGTAGATAAAGATAACGGTGCATATAGTCACGAAAATAATGTACAAT 840
consensus_7262#1      ------------------------------------------------------------
                                                                                  

consensus_7262#0      TCAATGACGTTACTGTTACTCATGTATTACCGTATATTCCTAGTCAGAAATGCTGTTCTA 900
consensus_7262#1      ------------------------------------------------------------
                                                                                  

consensus_7262#0      TTGATACTACTGTAGACACTAACAATCAAGATGAAGTCGGACACGTGTTCTTCCAATTGT 960
consensus_7262#1      ------------------------------------------------------------
                                                                                  

consensus_7262#0      TTGTTGCTCCATTCATGAATATTTATGAAAAGTCAATTTAGAAAACACCAGCATTTTTGC 1020
consensus_7262#1      ------------------------------------------------------------
                                                                                  

consensus_7262#0      AATTGTTTTACATTCATTTGTAATTGTAAAGAAAGCTCCCGTTTTTTCCAAAAAGTCTAT 1080
consensus_7262#1      ------------------------------------------------------------
                                                                                  

consensus_7262#0      TTTGTTAGCTGATCAGCCACTTTGATTTAGATTTTGTTGATAATCAGTGTAAATGTGTGT 1140
consensus_7262#1      ------------------------------------------------------------
                                                                                  

consensus_7262#0      TTGCCCAAAATTCTTTTTTTGCATTTCAAGCATTACCAGACACTTTTAAAAAACAATCAT 1200
consensus_7262#1      ------------------------------------------------------------
                                                                                  

consensus_7262#0      G 1201
consensus_7262#1      -