These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7268#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 713 fasta sequence [CTGTGAAAGCCAAGTAGAACTCACTCTTCTACATGTCAACATATAGATCTCAGATTGTACAGTTTCAGATAAGTAAAACTTTATACAATAAAATGTTACAGAACTTTAGGTATCGACGGGGTAATTTACACAGTGTTCGTTGTGTTCGCGCGGATTATCTTGATAAGCTCACGAGGCCTTTCTGCTTGATCAACATCGACCATACCGAGGCGCTGGACAACTTTCATGCCGGAAGCAACACGTCCAAAAATAGTATGTTTACCATCTAACCACTGTGTAGGAGCCAAAGTTATAAAAAACTGACTGCCATTTGTATTTGGACCCGCGTTTGCCATTGAAACAACTCCAGCACCTGTGTGTTTTAGGTCAGGGTGAATTTCATCCGCGAAATAAGAGCCATATATTGATGCTCCACCCCGACCAGTACCTGTTGGGTCTCCACCTTGTATCATGAAATCTCGGATAACACGATGAAAAGCGACATTATTATAGTAACCACGCCTTGCTAACTCAGCGAAATTAAGGCATGTCTTTGGGGCATGCTTCCAATAAAGTTCAATAGTTATAGTGCCTTGATTAGTGTCAAGAACAACAAAAGCTGGCTGGTCTTGAGCTGACATTCACAGCTGCAACACCAAAATCTGCTACTACCTTTCGACCTTTAATCTGAGGGATGAACGGAAAGCTAGGCCCAAGTCAAATCTGCCTACACA] [-] EMBL CD138205 [CTGTGAAAGCCAAGTAGAACTCACTCTTCTACATGTCAACATATAGATCTCAGATTGTACAGTTTCAGATAAGTAAAACTTTATACAATAAAATGTTACAGAACTTTAGGTATCGACGGGGTAATTTACACAGTGTTCGTTGTGTTCGCGCGGATTATCTTGATAAGCTCACGAGGCCTTTCTGCTTGATCAACATCGACCATACCGAGGCGCTGGACAACTTTCATGCCGGAAGCAACACGTCCAAAAATAGTATGTTTACCATCTAACCACTGTGTAGGAGCCAAAGTTATAAAAAACTGACTGCCATTTGTATTTGGACCCGCGTTTGCCATTGAAACAACTCCAGCACCTGTGTGTTTTAGGTCAGGGTGAATTTCATCCGCGAAATAAGAGCCATATATTGATGCTCCACCCCGACCAGT ] [+] EMBL CD193046 [ TGTTCGCGCGGATTATCTTGATAAGCTCACGAGGCCTTTCTGCTTGATCAACATCGACCATACCGAGGCGCTGGACAACTTTCATGCCGGAAGCAACACGTCCAAAAATAGTATGTTTACCATCTAACCACTGTGTAGGAGCCAAAGTTATAAAAAACTGACTGCCATTTGTATTTGGACCCGCGTTTGCCATTGAAACAACTCCAGCACCTGTGTGTTTTAGGTCAGGGTGAATTTCATCCGCGAAATAAGAGCCATATATTGATGCTCCACCCCGACCAGTACCTGTTGGGTCTCCACCTTGTATCATGAAATCTCGGATAACACGATGAAAAGCGACATTATTATAGTAACCACGCCTTGCTAACTCAGCGAAATTAAGGCATGTCTTTGGGGCATGCTTCCAATAAAGTTCAATAGTTATAGTGCCTTGATTAGTGTCAAGAACAACAAAAGCTGGCTGGTCTTGAGCTGACATTCACAGCTGCAACACCAAAATCTGCTACTACCTTTCGACCTTTAATCTGAGGGATGAACGGAAAGCTAGGCCCAAGTCAAATCTGCCTACACA] [-] EMBL CD077914 [ AACAACTCCAGCACCTGTGTGTTTTAGGTCAGGGTGAATCTCATCCGCGAAATAAGAGCCATATATTGATGCTCCACCCCGACCAGTACCTGTTGGGTCTCCACCTTGTATCATGAAATCTCGGATAACACGATGAAAAGCGACATTATTATAGTATCCACGCCTTGCTAACTCAGCGAAATTAAGGCATGTCTTTGGGGCATGCTTCCAATAAAGTTCAATAGTTATAGTGCCTTGATTAGTGTCAAGAACAACAAAAGCTGGCTGGTCTTGAGCTGACATTCACAGCTGCAACACCAAAATCTGCTACTACCTTTCGACCTTTAATCTGAGGGATG ] [+] EMBL CD159120 [ CAACTCCAGCACCTGTGTGCTTTAGGTCAGGGTGAATTTCATCCGCGAAATAAGAGCCATATATTGATGCTCCACCCCGACCAGTACCTGTTGGGTCTCCACCTTGTATCATGAAATCTCGGATAACACGATGAAAAGCGACATTATTATAGTAACCACGCCTTGCTAACTCAGCGAAATTAAGGCATGTCTTTGGGGCATGCTTCCAATAAAGTTCAATAGTTATAGTGCCTTGATTAGTGTCAAGAACAACAAAAGCTGGCTGGTCTTGAGCTGACATTCACAGCTGCAACACCAAAATCTGCTACTACCTTTCGACCTTTAATCTGAGGGATGAACGGAAAGCTAGGCCCAAGTCAAATCTGCCTACAC ] consensusID : consensus_7268#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 654 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTATACAATAAAATGTTACAGAACTTTAGGTATCGACGGGGTAATTTACACAGTGTTCGTTGTGTTCGCGCGGATTATCTTGATAAGCTCACGAGGCCTTTCTGCTTGATCAACATCTACCATACCGAGGCGCTGGACAACTTTCATGCCGGAAGCAACACGTCCAAAAATAGTATGTTTACCATCTAACCACTGTGTAGGAGCCAAAGTTATAAAAAACTGACTGCCATTTGTATTTGGACCCGCGTTTGCCATTGAAACAACTCCAGCACCTGTGTGTTTTAGGTCAGGGTGAATTTCATCCGCGAAATAAGAGCCATATATTGATGCTCCACCCCGACCAGTACCTGTTGGGTCTCCACCTTGTATCATGAAATCTCGGATAACACGATGAANAGCGACATTTTTATAGTAACCACGCCTTGCTAACTCAACGAAATAAGGCTTGTCTTGGGGCATGCTCCAATAAAGTCACATATTAAAATGGCCTGATTAATGTCAAGAACCACAAAAGCGGCTGGTCCTGAGCTGACTTCCAAGTTGCAACCCCAAAACTGGCTAATACCTTCCTCCGGTCCAAATTCTGGGCCCCAAGCNCCAATTCCTCAAATTAATCTCATTAAATTCCTAA] [+] EMBL AI394760 [TTTTTTTTTTTTTTTTTTTTTTTTTATACAATAAAATGTTACAGAACTTTAGGTATCGACGGGGTAATTTACACAGTGTTCGTTGTGTTCGCGCGGATTATCTTGATAAGCTCACGAGGCCTTTCTGCTTGATCAACATCTACCATACCGAGGCGCTGGACAACTTTCATGCCGGAAGCAACACGTCCAAAAATAGTATGTTTACCATCTAACCACTGTGTAGGAGCCAAAGTTATAAAAAACTGACTGCCATTTGTATTTGGACCCGCGTTTGCCATTGAAACAACTCCAGCACCTGTGTGTTTTAGGTCAGGGTGAATTTCATCCGCGAAATAAGAGCCATATATTGATGCTCCACCCCGACCAGTACCTGTTGGGTCTCCACCTTGTATCATGAAATCTCGGATAACACGATGAANAGCGACATTTTTATAGTAACCACGCCTTGCTAACTCAACGAAATAAGGCTTGTCTTGGGGCATGCTCCAATAAAGTCACATATTAAAATGGCCTGATTAATGTCAAGAACCACAAAAGCGGCTGGTCCTGAGCTGACTTCCAAGTTGCAACCCCAAAACTGGCTAATACCTTCCTCCGGTCCAAATTCTGGGCCCCAAGCNCCAATTCCTCAAATTAATCTCATTAAATTCCTAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7268#0 CTGTGAAAGCCAAGTAGAACTCACTCTTCTACATGTCAACATATAGATCTCAGATTGTAC 60 consensus_7268#1 ---------------------------------------------------------TTT 3 * consensus_7268#0 AGTTTCAGATAAGTAAAACTTTATACAATAAAATGTTACAGAACTTTAGGTATCGACGGG 120 consensus_7268#1 TTTTTTTTTTTTTTTTTTTTTTATACAATAAAATGTTACAGAACTTTAGGTATCGACGGG 63 *** * * ***************************************** consensus_7268#0 GTAATTTACACAGTGTTCGTTGTGTTCGCGCGGATTATCTTGATAAGCTCACGAGGCCTT 180 consensus_7268#1 GTAATTTACACAGTGTTCGTTGTGTTCGCGCGGATTATCTTGATAAGCTCACGAGGCCTT 123 ************************************************************ consensus_7268#0 TCTGCTTGATCAACATCGACCATACCGAGGCGCTGGACAACTTTCATGCCGGAAGCAACA 240 consensus_7268#1 TCTGCTTGATCAACATCTACCATACCGAGGCGCTGGACAACTTTCATGCCGGAAGCAACA 183 ***************** ****************************************** consensus_7268#0 CGTCCAAAAATAGTATGTTTACCATCTAACCACTGTGTAGGAGCCAAAGTTATAAAAAAC 300 consensus_7268#1 CGTCCAAAAATAGTATGTTTACCATCTAACCACTGTGTAGGAGCCAAAGTTATAAAAAAC 243 ************************************************************ consensus_7268#0 TGACTGCCATTTGTATTTGGACCCGCGTTTGCCATTGAAACAACTCCAGCACCTGTGTGT 360 consensus_7268#1 TGACTGCCATTTGTATTTGGACCCGCGTTTGCCATTGAAACAACTCCAGCACCTGTGTGT 303 ************************************************************ consensus_7268#0 TTTAGGTCAGGGTGAATTTCATCCGCGAAATAAGAGCCATATATTGATGCTCCACCCCGA 420 consensus_7268#1 TTTAGGTCAGGGTGAATTTCATCCGCGAAATAAGAGCCATATATTGATGCTCCACCCCGA 363 ************************************************************ consensus_7268#0 CCAGTACCTGTTGGGTCTCCACCTTGTATCATGAAATCTCGGATAACACGATGAAAAGCG 480 consensus_7268#1 CCAGTACCTGTTGGGTCTCCACCTTGTATCATGAAATCTCGGATAACACGATGAANAGCG 423 ******************************************************* **** consensus_7268#0 ACATTATTATAGTAACCACGCCTTGCTAACTCAGCGAAATTAAGGCATGTCTTTGGGGCA 540 consensus_7268#1 ACATTTTTATAGTAACCACGCCTTGCTAACTCAACGAAAT-AAGGCTTGTCTT-GGGGCA 481 ***** *************************** ****** ***** ****** ****** consensus_7268#0 TGCTTCCAATAAAGTTCAATAGTTATAGTGCCTTGATTAGTGTCAAGAACAACAAAAGCT 600 consensus_7268#1 TGCT-CCAATAAAGTCACATA-TTAAAATGGCCTGATTAATGTCAAGAACCACAAAAGC- 538 **** ********** *** *** * ** * ****** ********** ******** consensus_7268#0 GGCTGGTCTTGAGCTGACATTCACAGCTGCAACACCAAAATCTGCTACTACCTTTCGACC 660 consensus_7268#1 GGCTGGTCCTGAGCTGACTTCCA-AGTTGCAACCCCAAAACTGGCTAATACCTT----CC 593 ******** ********* * ** ** ****** ****** **** ****** ** consensus_7268#0 TTTAATCTGAGGGATGAACGGAAAGCT---AGGCCCAAGTCAAATCTGCCTACACA---- 713 consensus_7268#1 TCCGGTCCAAATTCTGGGCCCCAAGCNCCAATTCCTCAAATTAATCTCATTAAATTCCTA 653 * ** * ** * **** * ** * ***** ** * consensus_7268#0 - consensus_7268#1 A 654 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||