cluster # 7272

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Schistosoma mansoni
cluster # 7272 cluster # 7272 Sequences # 5 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7272#0 length = 522 sequences # 2
consensus_7272#1 length = 217 sequences # 1

consensus_7272#2 length = 190 sequences # 1
consensus_7272#3 length = 137 sequences # 1

consensusID : consensus_7272#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 522
fasta sequence

                              [TTATAATATATATCTTTATTTCAAAATTGTTAACACTGATAAGCACATATGATTAAGATTTCTTGTAATGGTAATATACTGTAAAGATAATACATATACTTGACAACAATCCATTATGAATATATTTAGTTGCTATGCTTGAAGGTGGTATAGTATCTATTTTGGCAACCAAAGCATTAAACGTATCTTTTAGCCTTCCAATTTCTCTTTTTAAATCTAATAAAAGAAAACGTGGATCTAAATCAACGTCAGTTTGAATGGATACATCTTTACTATTACGGCTTACGGGAACAGGTTCCGGTTCCGGTTCCGGTTCCGATGAAATCAATTCAACAAACATAAACAATACAAGTATCTTCCAATCATGCCATTGGATGTTTCCTCCTGGGCCGATTCCTAGCCGGGGGCCCATTGTTTGGGCGCCCCACGGGGGGGTCCNTTTTTCCCTTGGGGGGGTATTGGGCTTGGGAACAGGCAAGCGATANCGTGAATGTACGTCCATCCCACATCGGCGAGAAAGTA]

[-] EMBL SMU67153             [TTATAATATATATCTTTATTTCAAAATTGTTAACACTGATAAGCACATATGATTAAGATTTCTTGTAATGGTAATATACTGTAAAGATAATACATATACTTGACAACAATCCATTATGAATATATTTAGTTGCTATGCTTGAAGGTGGTATAGTATCTATTTTGGCAACCAAAGCATTAAACGTATCTTTTAGCCTTCCAATTTCTCTTTTTAAATCTAATAAAAGAAAACGTGGATCTAAATCAACGTCAGTTTGAATGGATACATCTTTACTATTACGGCTTACGGGAACAGGTTCCGGTTCCGGTTCCGGTTCCGATGAAATCAATTCAACAAACATAAACAATACAAGTATCTTCCA                                                                                                                                                                 ]
[+] EMBL SMAA69901            [     ATATATATCTTTATTTCAAAATTGTTAACACTGATAAGCACATATGATTAAGATTTCTTGTAATGGTAATATACTGTAAAGATAATACATATACTTGACAACAATCCATTATGAATATATTTAGTTGCTATGCTTGAAGGTGGTATAGTATCTATTTTGGCAACCAAAGCATTAAACGTATCTTTTAGCCTTCCAATTTCTC TTTTAAATCTAATAAAAG AAACGTGGACCTAAATCAACGTCAGTTTGAATGGATACATCTTTACTATTACGGCTTACGGG ACAGGTTCC GTTCC GTTCCGGTTCCGATG AATCAATTCAACAAACAT AAC ATTCAGGTTTC TCCAATCATGCCATTGGATGTTTCCTCCTGGGCCGATTCCTAGCCGGGGGCCCATTGTTTGGGCGCCCCACGGGGGGGTCCNTTTTTCCCTTGGGGGGGTATTGGGCTTGGGAACAGGCAAGCGATANCGTGAATGTACGTCCATCCCACATCGGCGAGAAAGTA]




>consensus_7272#0
TTATAATATATATCTTTATTTCAAAATTGTTAACACTGATAAGCACATATGATTAAGATT
TCTTGTAATGGTAATATACTGTAAAGATAATACATATACTTGACAACAATCCATTATGAA
TATATTTAGTTGCTATGCTTGAAGGTGGTATAGTATCTATTTTGGCAACCAAAGCATTAA
ACGTATCTTTTAGCCTTCCAATTTCTCTTTTTAAATCTAATAAAAGAAAACGTGGATCTA
AATCAACGTCAGTTTGAATGGATACATCTTTACTATTACGGCTTACGGGAACAGGTTCCG
GTTCCGGTTCCGGTTCCGATGAAATCAATTCAACAAACATAAACAATACAAGTATCTTCC
AATCATGCCATTGGATGTTTCCTCCTGGGCCGATTCCTAGCCGGGGGCCCATTGTTTGGG
CGCCCCACGGGGGGGTCCNTTTTTCCCTTGGGGGGGTATTGGGCTTGGGAACAGGCAAGC
GATANCGTGAATGTACGTCCATCCCACATCGGCGAGAAAGTA

consensusID : consensus_7272#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 217
fasta sequence

                              [GGCAACCAAAGCATTAAACGTATCTTTTAGCCTCCCAATTTCTCTTTTTAAATCTAATAAAAGAAAACGTGGATCTAAATCAACGTCAGTTTGAATGGATACATCTTTACTATTACGGCTTACGGGAACAGGTTCCGGTTCCGGTTCCGGTTCCGATGAAATCAATTCAACAAACATAAACAATACAAGTATCTTCCAAATCATGAACACTAGAATG]

[-] EMBL SMAA17940            [GGCAACCAAAGCATTAAACGTATCTTTTAGCCTCCCAATTTCTCTTTTTAAATCTAATAAAAGAAAACGTGGATCTAAATCAACGTCAGTTTGAATGGATACATCTTTACTATTACGGCTTACGGGAACAGGTTCCGGTTCCGGTTCCGGTTCCGATGAAATCAATTCAACAAACATAAACAATACAAGTATCTTCCAAATCATGAACACTAGAATG]




>consensus_7272#1
GGCAACCAAAGCATTAAACGTATCTTTTAGCCTCCCAATTTCTCTTTTTAAATCTAATAA
AAGAAAACGTGGATCTAAATCAACGTCAGTTTGAATGGATACATCTTTACTATTACGGCT
TACGGGAACAGGTTCCGGTTCCGGTTCCGGTTCCGATGAAATCAATTCAACAAACATAAA
CAATACAAGTATCTTCCAAATCATGAACACTAGAATG

consensusID : consensus_7272#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 190
fasta sequence

                              [TGTCTTTTCGCCAAGATACTGTCTTTAGCTCATTCTCTTTTAATCTAATAAAAGAAAACTGGTCTAAATCAACGTCAGTTTGAATGGATACATCTTTTACTATTACGGCTTACGGGAACAGGTTCCGGTTCCGGTTCCGGTTCCGGTTCCGATGAAATCAATTCAACAAACATAAAACAATACAAGTATC]

[-] EMBL SMAA69243            [TGTCTTTTCGCCAAGATACTGTCTTTAGCTCATTCTCTTTTAATCTAATAAAAGAAAACTGGTCTAAATCAACGTCAGTTTGAATGGATACATCTTTTACTATTACGGCTTACGGGAACAGGTTCCGGTTCCGGTTCCGGTTCCGGTTCCGATGAAATCAATTCAACAAACATAAAACAATACAAGTATC]




>consensus_7272#2
TGTCTTTTCGCCAAGATACTGTCTTTAGCTCATTCTCTTTTAATCTAATAAAAGAAAACT
GGTCTAAATCAACGTCAGTTTGAATGGATACATCTTTTACTATTACGGCTTACGGGAACA
GGTTCCGGTTCCGGTTCCGGTTCCGGTTCCGATGAAATCAATTCAACAAACATAAAACAA
TACAAGTATC

consensusID : consensus_7272#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 137
fasta sequence

                              [GAGNTTCAATTAAGGAATATCATTCTAGTGTTCATGATTTGGAAGATACTTGTATTGTTTATGTTTGTTGAATTGATTTCATCGGAACCGGAACCGCAACCGTNNNCTGTTCNCGGAANCAGAANTCNGTCACCATN]

[+] EMBL SM684                [GAGNTTCAATTAAGGAATATCATTCTAGTGTTCATGATTTGGAAGATACTTGTATTGTTTATGTTTGTTGAATTGATTTCATCGGAACCGGAACCGCAACCGTNNNCTGTTCNCGGAANCAGAANTCNGTCACCATN]




>consensus_7272#3
GAGNTTCAATTAAGGAATATCATTCTAGTGTTCATGATTTGGAAGATACTTGTATTGTTT
ATGTTTGTTGAATTGATTTCATCGGAACCGGAACCGCAACCGTNNNCTGTTCNCGGAANC
AGAANTCNGTCACCATN

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7272#0      TTATAATATATATCTTTATTTCAAAATTGTTAACACTGATAAGCACATATGATTAAGATT 60
consensus_7272#1      ------------------------------------------------------------
consensus_7272#2      ------------------------------------------------------------
consensus_7272#3      ------------------------------------------------------------
                                                                                  

consensus_7272#0      TCTTGTAATGGTAATATACTGTAAAGATAATACATATACTTGACAACAATCCATTATGAA 120
consensus_7272#1      ------------------------------------------------------------
consensus_7272#2      ------------------------------------------------------------
consensus_7272#3      ------------------------------------------------------------
                                                                                  

consensus_7272#0      TATATTTAGTTGCTATGCTTGAAGGTGGTATAGTATCTATTTTGGCAACCAAAGCATTAA 180
consensus_7272#1      -------------------------------------------GGCAACCAAAGCATTAA 17
consensus_7272#2      ---------------------------------------------------TGTCTTTTC 9
consensus_7272#3      ------------------------------------------------------------
                                                                                  

consensus_7272#0      ACGTATCTTTTAGCCTTCCAATTTCTCTTTTTAAATCTAATAAAAGAAAACGTGGATCTA 240
consensus_7272#1      ACGTATCTTTTAGCCTCCCAATTTCTCTTTTTAAATCTAATAAAAGAAAACGTGGATCTA 77
consensus_7272#2      GCCAAGATACT-GTCTTTAGCTCATTCTCTTTTAATCTAATAAAAGAAAAC--TGGTCTA 66
consensus_7272#3      -------------------------------GAGNTTCAATTAAGGAATAT---CATTCT 26
                                                         *  *** ** *** *      *   

consensus_7272#0      AATCAACGTCAGTTTGAATGGATACATCTTT-ACTATTACGGCTTACGGGAACAGGTTC- 298
consensus_7272#1      AATCAACGTCAGTTTGAATGGATACATCTTT-ACTATTACGGCTTACGGGAACAGGTTC- 135
consensus_7272#2      AATCAACGTCAGTTTGAATGGATACATCTTTTACTATTACGGCTTACGGGAACAGGTTC- 125
consensus_7272#3      AGTGTTCATGATTTGGAA--GATACTTGTAT---TGTTTATGTTTGTTGAATTGATTTCA 81
                      * *   * * * ** ***  ***** * * *   * **   * **   * *     *** 

consensus_7272#0      -CGGTTCCGGTTCCGGTTCCG------ATGAAATCAATTCAACAAACATAAA-CAATACA 350
consensus_7272#1      -CGGTTCCGGTTCCGGTTCCG------ATGAAATCAATTCAACAAACATAAA-CAATACA 187
consensus_7272#2      -CGGTTCCGGTTCCGGTTCCGGTTCCGATGAAATCAATTCAACAAACATAAAACAATACA 184
consensus_7272#3      TCGGAACCGGAACCGCAACCG--------TNNNCTGTTCNCGGAANCAGAANTCNGTCAC 133
                       ***  ****  ***   ***                *     ** ** **  *  *   

consensus_7272#0      AGTATCTTCCAA-TCATG--CCATTGGATGTTTCCTCCTGGGCCGATTCCTAGCCGGGGG 407
consensus_7272#1      AGTATCTTCCAAATCATGAACACTAGAATG------------------------------ 217
consensus_7272#2      AGTATC------------------------------------------------------ 190
consensus_7272#3      CATN-------------------------------------------------------- 137
                        *                                                         

consensus_7272#0      CCCATTGTTTGGGCGCCCCACGGGGGGGTCCNTTTTTCCCTTGGGGGGGTATTGGGCTTG 467
consensus_7272#1      ------------------------------------------------------------
consensus_7272#2      ------------------------------------------------------------
consensus_7272#3      ------------------------------------------------------------
                                                                                  

consensus_7272#0      GGAACAGGCAAGCGATANCGTGAATGTACGTCCATCCCACATCGGCGAGAAAGTA 522
consensus_7272#1      -------------------------------------------------------
consensus_7272#2      -------------------------------------------------------
consensus_7272#3      -------------------------------------------------------