These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7272#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 522 fasta sequence [TTATAATATATATCTTTATTTCAAAATTGTTAACACTGATAAGCACATATGATTAAGATTTCTTGTAATGGTAATATACTGTAAAGATAATACATATACTTGACAACAATCCATTATGAATATATTTAGTTGCTATGCTTGAAGGTGGTATAGTATCTATTTTGGCAACCAAAGCATTAAACGTATCTTTTAGCCTTCCAATTTCTCTTTTTAAATCTAATAAAAGAAAACGTGGATCTAAATCAACGTCAGTTTGAATGGATACATCTTTACTATTACGGCTTACGGGAACAGGTTCCGGTTCCGGTTCCGGTTCCGATGAAATCAATTCAACAAACATAAACAATACAAGTATCTTCCAATCATGCCATTGGATGTTTCCTCCTGGGCCGATTCCTAGCCGGGGGCCCATTGTTTGGGCGCCCCACGGGGGGGTCCNTTTTTCCCTTGGGGGGGTATTGGGCTTGGGAACAGGCAAGCGATANCGTGAATGTACGTCCATCCCACATCGGCGAGAAAGTA] [-] EMBL SMU67153 [TTATAATATATATCTTTATTTCAAAATTGTTAACACTGATAAGCACATATGATTAAGATTTCTTGTAATGGTAATATACTGTAAAGATAATACATATACTTGACAACAATCCATTATGAATATATTTAGTTGCTATGCTTGAAGGTGGTATAGTATCTATTTTGGCAACCAAAGCATTAAACGTATCTTTTAGCCTTCCAATTTCTCTTTTTAAATCTAATAAAAGAAAACGTGGATCTAAATCAACGTCAGTTTGAATGGATACATCTTTACTATTACGGCTTACGGGAACAGGTTCCGGTTCCGGTTCCGGTTCCGATGAAATCAATTCAACAAACATAAACAATACAAGTATCTTCCA ] [+] EMBL SMAA69901 [ ATATATATCTTTATTTCAAAATTGTTAACACTGATAAGCACATATGATTAAGATTTCTTGTAATGGTAATATACTGTAAAGATAATACATATACTTGACAACAATCCATTATGAATATATTTAGTTGCTATGCTTGAAGGTGGTATAGTATCTATTTTGGCAACCAAAGCATTAAACGTATCTTTTAGCCTTCCAATTTCTC TTTTAAATCTAATAAAAG AAACGTGGACCTAAATCAACGTCAGTTTGAATGGATACATCTTTACTATTACGGCTTACGGG ACAGGTTCC GTTCC GTTCCGGTTCCGATG AATCAATTCAACAAACAT AAC ATTCAGGTTTC TCCAATCATGCCATTGGATGTTTCCTCCTGGGCCGATTCCTAGCCGGGGGCCCATTGTTTGGGCGCCCCACGGGGGGGTCCNTTTTTCCCTTGGGGGGGTATTGGGCTTGGGAACAGGCAAGCGATANCGTGAATGTACGTCCATCCCACATCGGCGAGAAAGTA] consensusID : consensus_7272#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 217 fasta sequence [GGCAACCAAAGCATTAAACGTATCTTTTAGCCTCCCAATTTCTCTTTTTAAATCTAATAAAAGAAAACGTGGATCTAAATCAACGTCAGTTTGAATGGATACATCTTTACTATTACGGCTTACGGGAACAGGTTCCGGTTCCGGTTCCGGTTCCGATGAAATCAATTCAACAAACATAAACAATACAAGTATCTTCCAAATCATGAACACTAGAATG] [-] EMBL SMAA17940 [GGCAACCAAAGCATTAAACGTATCTTTTAGCCTCCCAATTTCTCTTTTTAAATCTAATAAAAGAAAACGTGGATCTAAATCAACGTCAGTTTGAATGGATACATCTTTACTATTACGGCTTACGGGAACAGGTTCCGGTTCCGGTTCCGGTTCCGATGAAATCAATTCAACAAACATAAACAATACAAGTATCTTCCAAATCATGAACACTAGAATG] consensusID : consensus_7272#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 190 fasta sequence [TGTCTTTTCGCCAAGATACTGTCTTTAGCTCATTCTCTTTTAATCTAATAAAAGAAAACTGGTCTAAATCAACGTCAGTTTGAATGGATACATCTTTTACTATTACGGCTTACGGGAACAGGTTCCGGTTCCGGTTCCGGTTCCGGTTCCGATGAAATCAATTCAACAAACATAAAACAATACAAGTATC] [-] EMBL SMAA69243 [TGTCTTTTCGCCAAGATACTGTCTTTAGCTCATTCTCTTTTAATCTAATAAAAGAAAACTGGTCTAAATCAACGTCAGTTTGAATGGATACATCTTTTACTATTACGGCTTACGGGAACAGGTTCCGGTTCCGGTTCCGGTTCCGGTTCCGATGAAATCAATTCAACAAACATAAAACAATACAAGTATC] consensusID : consensus_7272#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 137 fasta sequence [GAGNTTCAATTAAGGAATATCATTCTAGTGTTCATGATTTGGAAGATACTTGTATTGTTTATGTTTGTTGAATTGATTTCATCGGAACCGGAACCGCAACCGTNNNCTGTTCNCGGAANCAGAANTCNGTCACCATN] [+] EMBL SM684 [GAGNTTCAATTAAGGAATATCATTCTAGTGTTCATGATTTGGAAGATACTTGTATTGTTTATGTTTGTTGAATTGATTTCATCGGAACCGGAACCGCAACCGTNNNCTGTTCNCGGAANCAGAANTCNGTCACCATN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7272#0 TTATAATATATATCTTTATTTCAAAATTGTTAACACTGATAAGCACATATGATTAAGATT 60 consensus_7272#1 ------------------------------------------------------------ consensus_7272#2 ------------------------------------------------------------ consensus_7272#3 ------------------------------------------------------------ consensus_7272#0 TCTTGTAATGGTAATATACTGTAAAGATAATACATATACTTGACAACAATCCATTATGAA 120 consensus_7272#1 ------------------------------------------------------------ consensus_7272#2 ------------------------------------------------------------ consensus_7272#3 ------------------------------------------------------------ consensus_7272#0 TATATTTAGTTGCTATGCTTGAAGGTGGTATAGTATCTATTTTGGCAACCAAAGCATTAA 180 consensus_7272#1 -------------------------------------------GGCAACCAAAGCATTAA 17 consensus_7272#2 ---------------------------------------------------TGTCTTTTC 9 consensus_7272#3 ------------------------------------------------------------ consensus_7272#0 ACGTATCTTTTAGCCTTCCAATTTCTCTTTTTAAATCTAATAAAAGAAAACGTGGATCTA 240 consensus_7272#1 ACGTATCTTTTAGCCTCCCAATTTCTCTTTTTAAATCTAATAAAAGAAAACGTGGATCTA 77 consensus_7272#2 GCCAAGATACT-GTCTTTAGCTCATTCTCTTTTAATCTAATAAAAGAAAAC--TGGTCTA 66 consensus_7272#3 -------------------------------GAGNTTCAATTAAGGAATAT---CATTCT 26 * *** ** *** * * consensus_7272#0 AATCAACGTCAGTTTGAATGGATACATCTTT-ACTATTACGGCTTACGGGAACAGGTTC- 298 consensus_7272#1 AATCAACGTCAGTTTGAATGGATACATCTTT-ACTATTACGGCTTACGGGAACAGGTTC- 135 consensus_7272#2 AATCAACGTCAGTTTGAATGGATACATCTTTTACTATTACGGCTTACGGGAACAGGTTC- 125 consensus_7272#3 AGTGTTCATGATTTGGAA--GATACTTGTAT---TGTTTATGTTTGTTGAATTGATTTCA 81 * * * * * ** *** ***** * * * * ** * ** * * *** consensus_7272#0 -CGGTTCCGGTTCCGGTTCCG------ATGAAATCAATTCAACAAACATAAA-CAATACA 350 consensus_7272#1 -CGGTTCCGGTTCCGGTTCCG------ATGAAATCAATTCAACAAACATAAA-CAATACA 187 consensus_7272#2 -CGGTTCCGGTTCCGGTTCCGGTTCCGATGAAATCAATTCAACAAACATAAAACAATACA 184 consensus_7272#3 TCGGAACCGGAACCGCAACCG--------TNNNCTGTTCNCGGAANCAGAANTCNGTCAC 133 *** **** *** *** * ** ** ** * * consensus_7272#0 AGTATCTTCCAA-TCATG--CCATTGGATGTTTCCTCCTGGGCCGATTCCTAGCCGGGGG 407 consensus_7272#1 AGTATCTTCCAAATCATGAACACTAGAATG------------------------------ 217 consensus_7272#2 AGTATC------------------------------------------------------ 190 consensus_7272#3 CATN-------------------------------------------------------- 137 * consensus_7272#0 CCCATTGTTTGGGCGCCCCACGGGGGGGTCCNTTTTTCCCTTGGGGGGGTATTGGGCTTG 467 consensus_7272#1 ------------------------------------------------------------ consensus_7272#2 ------------------------------------------------------------ consensus_7272#3 ------------------------------------------------------------ consensus_7272#0 GGAACAGGCAAGCGATANCGTGAATGTACGTCCATCCCACATCGGCGAGAAAGTA 522 consensus_7272#1 ------------------------------------------------------- consensus_7272#2 ------------------------------------------------------- consensus_7272#3 ------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||