cluster # 7278

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Schistosoma mansoni
cluster # 7278 cluster # 7278 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7278#0 length = 595 sequences # 3

consensus_7278#1 length = 323 sequences # 1
consensus_7278#2 length = 272 sequences # 1

consensusID : consensus_7278#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 595
fasta sequence

                              [AATTTGACCACTTGGCCATGGAATAATATTTAATAAATCATTAGGCGCTGAAATAGGCCATTGTACACGACTATTTAATAAGGTCACATTGAAATATTGATCTTCGTAAGATTTCAACTGATTATTCATTTTTTCATCGACATCAACACGACTGACATTTATAGATGGTTTACTACGATAACATTTAATTTCATACGATTCAAATATACCATGACGATGATCCCAATCAGGTGGATTCCATGATAGGATTATTTGATCTAATGTATAACTGACTTGTATTGAAGTTGGTGTATTTGTTGGTGCTGTTCCTTCAAATGACACTGTTTCTATAGTTTCATAACCAATTTGTAATGTTGTGATTACAGCAACACGAAATTCATAACTCATACCAAGTAGAAATATACCAGAAGCAGGATTCCAACTAGTTTCAGTTAAATTCACTTCACCATGTAAAAATTTGGTTGGAACAAGTGATTCTGATTGAAATGGATTGCGAGCACCATTTTCTATGAATTGATTCGCATGGTATTGGTGCTGTTGTGGTTCGATTTGTTGGTGTTTCTGTTGTTTTTCAATGATAGGCCAATATAATGTC]

[+] EMBL CD114335             [AATTTGACCACTTGGCCATGGAATAATATTTAATAAATCATTAGGCGCTGAAATAGGCCATTGTACACGACTATTTAATAAGGTCACATTGAAATATTGATCTTCGTAAGATTTCAACTGATTATTCATTTTTTCATCGACATCAACACGACTGACATTTATAGATGGTTTACTACGATAACATTTAATTTCATACGATTCAAATATACCATGACGATGATCCCAATCAGGTGGATTCCATGATAGGATTATTTGATCTAATGTATAACTGACTTGTATTGAAGTTGGTGTATTTGTTGGTGCTGTTCCTTCAAATGACACTGTTTCTATAGTTTCATAACCAATTTGTAATGTTGTGATTACAGCAACACGAAATTCATAACTCATACCAAGTAGAAATATACCAGAAGCAGGATTCCAACTAGTTTCAGTTAAATTCACTTCACCATGTAAAAATTTGGTTGGAACAAGTGATTCTGATTGAAATGGATTGCGAGCACCATTTTCTATGAATTGATTCGCATGGTATTGGTGCTGTTGTGGTTCGATTTGTTGG                                       ]
[+] EMBL CD119090             [                                                                                                                                                         GACATTTATAGATGGTTTACTACGATAACATTTAATTTCATACGATTCAAATATACCATGACGATGATCCCAATCAGGTGGATTCCATGATAGGATTATTTGATCTAATGTATAACTGACTTGTATTGAAGTTGGTGTATTTGTTGGTGCTGTTCCTTCAAATGACACTGTTTCTATAGTTTCATAACCAATTTGTAATGTTGTGATTACAGCAACACGAAATTCATAACTCATACCAAGTAGAAATATACCAGAAGCAGGATTCCAACTAGTTTCAGTTAAATTCACTTCACCATGTAAAAATTTGGTTGGAACAAGTGATTCTGATTGAAATGGATTGCGAGCACCATTTTCTATGAATTGATTCGCATGGTATTGGTGCTGTTGTGGTTCGATTTGTTGGTGTTTCTGTTGTTTTTCAATGATAGGCCAATATAATGTC]
[+] EMBL CD119273             [                                                                                                                                                         GACATTTATAGATGGTTTACTACGATAACATTTAATTTCATACGATTCAAATATACCATGACGATGATCCCAATCAGGTGGATTCCATGATAGGATTATTTGATCTAATGTATGACTGACTTGTATTGAAGTTGGTGTATTTGTTGGTGCTGTTCCTTCAAATGACACTGTTTCTATAGTTTCATAACCAATTTGTAGTGTTGTGATTACAGCAACACGAAATTCATAACTCATACCAAGTAGAAATATACCAGAAGCAGGATTCCAACTAGTTTCAGTTAAATTCACTTCACCATGTAAAAATTTGGTTGGAACAAGTGATTCTGATTGAACTGGATTGCGAGCACCATTTTCTATGAATTGA                                                                              ]




>consensus_7278#0
AATTTGACCACTTGGCCATGGAATAATATTTAATAAATCATTAGGCGCTGAAATAGGCCA
TTGTACACGACTATTTAATAAGGTCACATTGAAATATTGATCTTCGTAAGATTTCAACTG
ATTATTCATTTTTTCATCGACATCAACACGACTGACATTTATAGATGGTTTACTACGATA
ACATTTAATTTCATACGATTCAAATATACCATGACGATGATCCCAATCAGGTGGATTCCA
TGATAGGATTATTTGATCTAATGTATAACTGACTTGTATTGAAGTTGGTGTATTTGTTGG
TGCTGTTCCTTCAAATGACACTGTTTCTATAGTTTCATAACCAATTTGTAATGTTGTGAT
TACAGCAACACGAAATTCATAACTCATACCAAGTAGAAATATACCAGAAGCAGGATTCCA
ACTAGTTTCAGTTAAATTCACTTCACCATGTAAAAATTTGGTTGGAACAAGTGATTCTGA
TTGAAATGGATTGCGAGCACCATTTTCTATGAATTGATTCGCATGGTATTGGTGCTGTTG
TGGTTCGATTTGTTGGTGTTTCTGTTGTTTTTCAATGATAGGCCAATATAATGTC

consensusID : consensus_7278#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 323
fasta sequence

                              [TGCATGAAAGAATTAGAAGGATGGGAACCTGATGATGATCCAGACAAAGAGCATAAAAGTCATTCACCAAAGTGCCCTTTCCTCAAATCTAAGCAATATGAACAAATGACTTATGAAGAAGGTTTAGCGATGGATGTTGAAAGGTATTGTACTTATCTTTCCAAGATTCTTTCGGATCAGTATGATGTCCAAAAAGTCCAAAAGGCATTTAAAATGTTTACTGAAATTGTATTATCCAAACTACCAAAGCGGAATAAAAAAAGAAAATCGAACCTCAGCAAAAGAACAAACTCAATTATGTCAAATTCAAGTATTAAATCAAC]

[+] EMBL CD135669             [TGCATGAAAGAATTAGAAGGATGGGAACCTGATGATGATCCAGACAAAGAGCATAAAAGTCATTCACCAAAGTGCCCTTTCCTCAAATCTAAGCAATATGAACAAATGACTTATGAAGAAGGTTTAGCGATGGATGTTGAAAGGTATTGTACTTATCTTTCCAAGATTCTTTCGGATCAGTATGATGTCCAAAAAGTCCAAAAGGCATTTAAAATGTTTACTGAAATTGTATTATCCAAACTACCAAAGCGGAATAAAAAAAGAAAATCGAACCTCAGCAAAAGAACAAACTCAATTATGTCAAATTCAAGTATTAAATCAAC]




>consensus_7278#1
TGCATGAAAGAATTAGAAGGATGGGAACCTGATGATGATCCAGACAAAGAGCATAAAAGT
CATTCACCAAAGTGCCCTTTCCTCAAATCTAAGCAATATGAACAAATGACTTATGAAGAA
GGTTTAGCGATGGATGTTGAAAGGTATTGTACTTATCTTTCCAAGATTCTTTCGGATCAG
TATGATGTCCAAAAAGTCCAAAAGGCATTTAAAATGTTTACTGAAATTGTATTATCCAAA
CTACCAAAGCGGAATAAAAAAAGAAAATCGAACCTCAGCAAAAGAACAAACTCAATTATG
TCAAATTCAAGTATTAAATCAAC

consensusID : consensus_7278#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 272
fasta sequence

                              [GAAAGAATCTTGGAAAGATAAGTACAATACCTTTCAACATCCATCGCTAAACCTTCTTCATAACCAATTTGTAATGTTGTGATTACAGCAACACGAAATTCATAACTCATACCAAGTAGAAATATACCAGAAGCAGGATTCCAACTAGTTTCAGTTAAATTCACTTCACCATGTAAAAATTTGGTTGGAACAAGTGATTCTGATTGAAATGGATTGCGAGCACCATTTTCTATGAATTGATTCGCATGGTATTGGTGCTGTTGTGGTTCGAT]

[-] EMBL CD192424             [GAAAGAATCTTGGAAAGATAAGTACAATACCTTTCAACATCCATCGCTAAACCTTCTTCATAACCAATTTGTAATGTTGTGATTACAGCAACACGAAATTCATAACTCATACCAAGTAGAAATATACCAGAAGCAGGATTCCAACTAGTTTCAGTTAAATTCACTTCACCATGTAAAAATTTGGTTGGAACAAGTGATTCTGATTGAAATGGATTGCGAGCACCATTTTCTATGAATTGATTCGCATGGTATTGGTGCTGTTGTGGTTCGAT]




>consensus_7278#2
GAAAGAATCTTGGAAAGATAAGTACAATACCTTTCAACATCCATCGCTAAACCTTCTTCA
TAACCAATTTGTAATGTTGTGATTACAGCAACACGAAATTCATAACTCATACCAAGTAGA
AATATACCAGAAGCAGGATTCCAACTAGTTTCAGTTAAATTCACTTCACCATGTAAAAAT
TTGGTTGGAACAAGTGATTCTGATTGAAATGGATTGCGAGCACCATTTTCTATGAATTGA
TTCGCATGGTATTGGTGCTGTTGTGGTTCGAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7278#0      AATTTGACCACTTGGCCATGGAATAATATTTAATAAATCATTAGGCGCTGAAATAGGCCA 60
consensus_7278#2      ------------------------------------------------------------
consensus_7278#1      ------------------------------------------------------------
                                                                                  

consensus_7278#0      TTGTACACGACTATTTAATAAGGTCACATTGAAATATTGATCTTCGTAAGATTTCAACTG 120
consensus_7278#2      ------------------------------------------------------------
consensus_7278#1      ------------------------------------------------------------
                                                                                  

consensus_7278#0      ATTATTCATTTTTTCATCGACATCAACACGACTGACATTTATAGATGGTTTACTACGATA 180
consensus_7278#2      ------------------------------------------------------------
consensus_7278#1      ------------------------------------------------------------
                                                                                  

consensus_7278#0      ACATTTAATTTCATACGATTCAAATATACCATGACGATGATCCCAATCAGGTGGATTCCA 240
consensus_7278#2      ------------------------------------------------------------
consensus_7278#1      ------------------------------TGCATGAAAGAATTAGAAGGATGGGAACCT 30
                                                                                  

consensus_7278#0      TGATAGGATTATTTGATCTAATGTATAACTGACTTGTATTGAAGTTGGTGTAT-TTGTTG 299
consensus_7278#2      --------------------------------------GAAAGAATCTTGGAA-AGATAA 21
consensus_7278#1      GATGATGATCCAGACAAAGAGCATAAAAGTCATTCACCAAAGTGCCCTTTCCTCAAATCT 90
                                                                      *        *  

consensus_7278#0      GTGCTGTTCCTTCAAATGAC-ACTGTTTCTATAGTTTCATAACCAAT-TTGTAA--TGTT 355
consensus_7278#2      GTACAATACCTTTCAACATCCATCGCTAAACCTTCTTCATAACCAAT-TTGTAA--TGTT 78
consensus_7278#1      AAGCAATATGAACAAATGAC--TTATGAAGAAGGTTTAGCGATGGATGTTGAAAGGTATT 148
                         *  *       **   *               **    *   ** *** **  * **

consensus_7278#0      GTGATTACAGCAACACGAAATTCATAACTCA-TACCAAGTAGAAATATACCAGAAGCAGG 414
consensus_7278#2      GTGATTACAGCAACACGAAATTCATAACTCA-TACCAAGTAGAAATATACCAGAAGCAGG 137
consensus_7278#1      GTACTTATCTTTCCAAGATTCTTTCGGATCAGTATGATGTCCAAAAAGTCCAAAAG--GC 206
                      **  ***      ** **   *      *** **  * **  *** *  *** ***  * 

consensus_7278#0      ATTCCAACTAGTTTCAGTTAAATTCACTTCACCATGTAAAAATTTGGTTGGAACAAGTGA 474
consensus_7278#2      ATTCCAACTAGTTTCAGTTAAATTCACTTCACCATGTAAAAATTTGGTTGGAACAAGTGA 197
consensus_7278#1      ATTTAAAATG--TTTACTGAAATTGTATTATCCA---AACTACCAAAGCGGAATAAAAAA 261
                      ***  ** *   ** * * *****   **  ***   **  *       **** **   *

consensus_7278#0      TTCTGATTGAAATGGATTGCGAGCACCATTTTCTATGAATTGATTCGCATGGTATTGGTG 534
consensus_7278#2      TTCTGATTGAAATGGATTGCGAGCACCATTTTCTATGAATTGATTCGCATGGTATTGGTG 257
consensus_7278#1      AGAAAATCGAACCTCAGCAAAAGAACAAACTCAATTATGTCAAATTCAA--GTATTAAAT 319
                           ** ***    *     ** ** *  *    *   *  * *   *  *****    

consensus_7278#0      CTGTTGTGGTTCGATTTGTTGGTGTTTCTGTTGTTTTTCAATGATAGGCCAATATAATGT 594
consensus_7278#2      CTGTTGTGGTTCGAT--------------------------------------------- 272
consensus_7278#1      CAAC-------------------------------------------------------- 323
                      *                                                           

consensus_7278#0      C 595
consensus_7278#2      -
consensus_7278#1      -