cluster # 7283

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Schistosoma mansoni
cluster # 7283 cluster # 7283 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7283#0 length = 607 sequences # 2

consensus_7283#1 length = 419 sequences # 1
consensus_7283#2 length = 356 sequences # 2

consensusID : consensus_7283#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 607
fasta sequence

                              [CCCTCGAGCCAANAATTCGGCACGAGGTGTAAGCGTATCCGCAAGACAAAACCTTCAATCGCTATTCCCTATATTCATCCAAATCGTGAGCATTTAGATGAAAGGGCAATTTATGGCTTCATTATATATCTTGTATGTTTTCCTGCATTTGGATTGTATGTAATTTGGGCATATATTCCACATGAATGGTTGAATTTAATTGGAATAACGTACCTACCCAGCAAACACTGGTCAGTTACTGCACCAATTTCACTACTGATTTTATGTATATCTGGTCTTTTTGCTTACATTTGGAATAATCGTTCACTCATGCAACCGCTTACATCGATTTATCAAATTAGAGATTCGCTTTCAATGTATGCTCGAAATTCAACTGATAGTTATGTCACAGATCAACAGTCGTCTAATTCAAACGTATCAAAACCAGTCGAGTTATTGAGACCATTATCGATAATCCCCCCTGTGTATGATTTGGATCATATTTGGGTAACGAGTGAGTTGTATTTAAAGACAAATAAAATTACCACCTCAAGCATTATTGACCATAATATTGTGAAGTATTAACAAAACAAAAAGGATAAGATTTCGTTTTTGTGACTTATTAGGT]

[+] EMBL CD081927             [CCCTCGAGCCAANAATTCGGCACGAGGTGTAAGCGTATCCGCAAGACAAAACCTTCAATCGCTATTCCCTATATTCATCCAAATCGTGAGCATTTAGATGAAAGGGCAATTTATGGCTTCATTATATATCTTGTATGTTTTCCTGCATTTGGATTGTATGTAATTTGGGCATATATTCCACATGAATGGTTGAATTTAATTGGAATAACGTACCTACCCAGCAAACACTGGTCAGTTACTGCACCAATTTCACTACTGATTTTATGTATATCTGGTCTTTTTGCTTACATTTGGAATAATCGTTCACTCATGCAACCGCTTACATCGATTTATCAAATTAGAGATTCGCTTTCAATGTATGCTCGAAATTCAACTGATAGTTATGTCACAGATCAACAGTCGTCTAATTCAAACGTATCAAAACCAGTCGAGTTATTGAGACCATTATCGATAATCCCCCCTGTGTATGATTTGGATCATATTTGGGTAACGAGTGAGTTGTATTTAAAGACAAATAAAATTACCACCTCAAGCATTATTGACCATAATATTGTGAAGTATTAACAAAACAAAAAGGATAAGATTTCGTTTTTGTGACTTATTAGG ]
[+] EMBL CD081699             [                TCGGCACGACGTGTAAGCGTATCCGCAATACAAAACCTTCAATCGCTATTCCCTATATTCATCCAAATCGTGAGCATTTAGATGAAAGGGCAATTTATGGCTTCATTATATATCTTGTATGTTTTCCTGCATTTGGATTGTATGTAATTTGGGCATATATTCCACATGAATGGTTGAATTTAATTGGAATAACGTACCTACCCAGCAAACACTGGTCAGTTACTGCACCAATTTCACTACTGATTTTATGTATATCTGGTCTTTTTGCTTACATTTGGAATAATCGTTCACTCATGCAACCGCTTACATCGATTTATCAAATTAGAGATTCGCTTTCAATGTATGCTCGAAATTCAACTGATAGTTATGTCACAGATCAACAGTCGTCTAATTCAAACGTATCAAAACCAGTCGAGTTATTGAGACCATTATCGATAATCCCCCCTGTGTATGATTTGGATCATATTTGGGTAACGAGTGAGTTGTATTTAAAGACAAATAAAATTACCACCTCAAGCATTATTGACCATAATATTGTGAAGTATTAACAAAACAAAAAGGATAAGATTTCGTTTTTGTGACTTATTAGGT]




>consensus_7283#0
CCCTCGAGCCAANAATTCGGCACGAGGTGTAAGCGTATCCGCAAGACAAAACCTTCAATC
GCTATTCCCTATATTCATCCAAATCGTGAGCATTTAGATGAAAGGGCAATTTATGGCTTC
ATTATATATCTTGTATGTTTTCCTGCATTTGGATTGTATGTAATTTGGGCATATATTCCA
CATGAATGGTTGAATTTAATTGGAATAACGTACCTACCCAGCAAACACTGGTCAGTTACT
GCACCAATTTCACTACTGATTTTATGTATATCTGGTCTTTTTGCTTACATTTGGAATAAT
CGTTCACTCATGCAACCGCTTACATCGATTTATCAAATTAGAGATTCGCTTTCAATGTAT
GCTCGAAATTCAACTGATAGTTATGTCACAGATCAACAGTCGTCTAATTCAAACGTATCA
AAACCAGTCGAGTTATTGAGACCATTATCGATAATCCCCCCTGTGTATGATTTGGATCAT
ATTTGGGTAACGAGTGAGTTGTATTTAAAGACAAATAAAATTACCACCTCAAGCATTATT
GACCATAATATTGTGAAGTATTAACAAAACAAAAAGGATAAGATTTCGTTTTTGTGACTT
ATTAGGT

consensusID : consensus_7283#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 419
fasta sequence

                              [GTATGTAATTTGGGCATATATTCCACATGAATGGTTGAATTTAATTGGAATAACGTACCTACCCAGCAAACACTGGTCAGTTACTGCACCAATTTCACTACTGATTTTATGTATATCTGGTCTTTTTGCTTACATTTGGAATAATCGTTCACTCATGCAACCGCTTACATCGATTTATCAAATTAGAGGTATTTGTTGGTGCTGAGAAATGAGAATTTCGTTCTACACTTCATATTTTGGAAGCTTACACAGCGAAATCAGGATATGTTATTGCGACATCCGTTGTTAGCTTCCTAATCAATCATCTAATGCACTTCAAAAGCCATGTGAAGAGAATGTGACATTTAATTAAATAAAAGCGAGTAAACTTTCAGCTCAACGATCTTTCTTACAATGATCTAGTGTTTAATTTTTGTCCC]

[+] EMBL CD121844             [GTATGTAATTTGGGCATATATTCCACATGAATGGTTGAATTTAATTGGAATAACGTACCTACCCAGCAAACACTGGTCAGTTACTGCACCAATTTCACTACTGATTTTATGTATATCTGGTCTTTTTGCTTACATTTGGAATAATCGTTCACTCATGCAACCGCTTACATCGATTTATCAAATTAGAGGTATTTGTTGGTGCTGAGAAATGAGAATTTCGTTCTACACTTCATATTTTGGAAGCTTACACAGCGAAATCAGGATATGTTATTGCGACATCCGTTGTTAGCTTCCTAATCAATCATCTAATGCACTTCAAAAGCCATGTGAAGAGAATGTGACATTTAATTAAATAAAAGCGAGTAAACTTTCAGCTCAACGATCTTTCTTACAATGATCTAGTGTTTAATTTTTGTCCC]




>consensus_7283#1
GTATGTAATTTGGGCATATATTCCACATGAATGGTTGAATTTAATTGGAATAACGTACCT
ACCCAGCAAACACTGGTCAGTTACTGCACCAATTTCACTACTGATTTTATGTATATCTGG
TCTTTTTGCTTACATTTGGAATAATCGTTCACTCATGCAACCGCTTACATCGATTTATCA
AATTAGAGGTATTTGTTGGTGCTGAGAAATGAGAATTTCGTTCTACACTTCATATTTTGG
AAGCTTACACAGCGAAATCAGGATATGTTATTGCGACATCCGTTGTTAGCTTCCTAATCA
ATCATCTAATGCACTTCAAAAGCCATGTGAAGAGAATGTGACATTTAATTAAATAAAAGC
GAGTAAACTTTCAGCTCAACGATCTTTCTTACAATGATCTAGTGTTTAATTTTTGTCCC

consensusID : consensus_7283#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 356
fasta sequence

                              [GTGATTTCTGCTCAAGTTGTTGTACTTATTTCATGTGTTCGATCGATGAATCATGTAAGCGTATCCGCAAGACAAAACCTTCAATCGCTATTCCCTATATTCATCCAAATCGTGAGCATTTAGATGAAAGGGCAATTTATGGCTTCATTATATATCTTGTATGTTTTCCTGCATTTGGATTGTATGTAATTTGGGCATATATTCCACATGAATGGTTGAATTTAATTGGAATAACGTACCTACCCAGCAAGTATTTGTTGGTGCTAAGAAATGAGAATTTCGTTCTACACTTCATATTTTGGAAGCTTACACAGCGAAATCAGGATATGTTATTGCG-ACATCCGTTGTTAGCTTCT]

[-] EMBL CD117571             [GTGATTTCTGCTCAAGTTGTTGTACTTATTTCATGTGTTCGATCGATGAATCATGTAAGCGTATCCGCAAGACAAAACCTTCAATCGCTATTCCCTATATTCATCCAAATCGTGAGCATTTAGATGAAAGGGCAATTTATGGCTTCATTATATATCTTGTATGTTTTCCTGCATTTGGATTGTATGTAATTTGGGCATATATTCCACATGAATGGTTGAATTTAATTGGAATAACGTACCTACCCAGCAAGTATTTGTTGGTGCTAAGAAATGAGAATTTCGTTCTACACTTCATATTTTGGAAGCTTACACAGCGAAATCAGGATATGTTATTGCG ACATCCGTTGTTAGCTTCT]
[-] EMBL CD117575             [GTGATTTCTGCTCAAGTTGTTGTACTTATTTCATGTGTTCGATCGATGAATCATGTAAGCGTATCCGCAAGACAAAACCTTCAATCGCTATTCCTTATATTCATCCAAATCGTGAGCATTTAGATGAAAGGGCAATTTATGGCTTCATTATATATCTTGTATGTTTTCCTGCATTTGGATTGTATGTAATTTGGGCATATATTCCACATGAATGGTTGAATTTAATTGGAATGACGTACTTACCCAGCAAGTATTTGTTGGTGCTAACAAAAGAGATGTTCGTTCGACCATTCATA GTTGAGAGCTTACACAGCCTAATCAGCATGCG CATTGCGCACATCCGTCGTTAGGTTCT]




>consensus_7283#2
GTGATTTCTGCTCAAGTTGTTGTACTTATTTCATGTGTTCGATCGATGAATCATGTAAGC
GTATCCGCAAGACAAAACCTTCAATCGCTATTCCCTATATTCATCCAAATCGTGAGCATT
TAGATGAAAGGGCAATTTATGGCTTCATTATATATCTTGTATGTTTTCCTGCATTTGGAT
TGTATGTAATTTGGGCATATATTCCACATGAATGGTTGAATTTAATTGGAATAACGTACC
TACCCAGCAAGTATTTGTTGGTGCTAAGAAATGAGAATTTCGTTCTACACTTCATATTTT
GGAAGCTTACACAGCGAAATCAGGATATGTTATTGCGACATCCGTTGTTAGCTTCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7283#0      ----------------------CCCTCGAGCCAANAATTCGGC--ACGAG--GTGTAAGC 34
consensus_7283#2      GTGATTTCTGCTCAAGTTGTTGTACTTATTTCATGTGTTCGATCGATGAATCATGTAAGC 60
consensus_7283#1      ---------------------------------------------GTATGTAATTTGGGC 15
                                                                           * *  **

consensus_7283#0      GTATCCGCAAGACAAAACCTTCAATCGCTATTCCCTATATTCATCCAAATCGTGAGCATT 94
consensus_7283#2      GTATCCGCAAGACAAAACCTTCAATCGCTATTCCCTATATTCATCCAAATCGTGAGCATT 120
consensus_7283#1      ATATATTCCACATGAATGGTTGAATT-TAATTGGAATAACGTACCTACCCAGCAAACACT 74
                       ***   * * *  **   ** ***    ***      *   * * *    *  * ** *

consensus_7283#0      TAGATGAAAGGGCAATTTATGGCTTCATTATATATCTTGTATGTTTTCCTGCATTTGGAT 154
consensus_7283#2      TAGATGAAAGGGCAATTTATGGCTTCATTATATATCTTGTATGTTTTCCTGCATTTGGAT 180
consensus_7283#1      GGTCAGTTACTGCA----CCAATTTCACTACTGATTTTATGTATATCTGGTCTTTTTGCT 130
                           *  *  ***         **** **   ** ** * * * *     * *** * *

consensus_7283#0      TGTATGTAATTTGGGCATATATTCCACATGAATGGTTGAATTTAATTGGAATAACGTACC 214
consensus_7283#2      TGTATGTAATTTGGGCATATATTCCACATGAATGGTTGAATTTAATTGGAATAACGTACC 240
consensus_7283#1      TACATTTGGAATAATCGTTCACTC-ATGCAACCGCTTACATCGATTT----------ATC 179
                      *  ** *    *   * *  * ** *    *  * **  **  * **          * *

consensus_7283#0      TACCCAGCAAACACTGGTCAGTTACTGCACCAATTTCACTACTGATTTTATGTATATCTG 274
consensus_7283#2      TACCCAGCAAGTATTTGTTGGT-GCTA-AGAAATGAGAAT-TTCGTTCTACACTT-CATA 296
consensus_7283#1      AAATTAG-AGGTATTTGTTGGT-GCTG-AGAAATGAGAAT-TTCGTTCTACACTT-CATA 234
                       *   ** *   * * **  **  **  *  ***   * *  *  ** **    *   * 

consensus_7283#0      GTCTTTTTGCTTACATT-TGGAATAATCGTTCACTCATGCAACCGCTTACATCGATTTAT 333
consensus_7283#2      TTTTGGAAGCTTACACAGCGAAATCAGGATATGTTATTGCGACATCCGTTGTTAGCTTCT 356
consensus_7283#1      TTTTGGAAGCTTACACAGCGAAATCAGGATATGTTATTGCGACATCCGTTGTTAGCTTCC 294
                       * *    *******    * *** *   *    *  *** **  *     *    **  

consensus_7283#0      CAAATTAGAGATTCGCTTTCAATGTATGCTCGAAATTCAACTGATAGTTATGTCACAGAT 393
consensus_7283#2      ------------------------------------------------------------
consensus_7283#1      TAATCAATCATCTAATGCACTTCAAAAGCCATGTGAAGAGAATGTGACATTTAATTAAAT 354
                                                                                  

consensus_7283#0      CAACAGTCGTCTAATTCAAACGTATCAAAACCAGTCGAGTTATTGAGACCATTATCGATA 453
consensus_7283#2      ------------------------------------------------------------
consensus_7283#1      AAAAGCGAGTAAACTTTCAGCTCAACGATCTTTCTTACAATGATCTAGTGTTTAATTTTT 414
                                                                                  

consensus_7283#0      ATCCCCCCTGTGTATGATTTGGATCATATTTGGGTAACGAGTGAGTTGTATTTAAAGACA 513
consensus_7283#2      ------------------------------------------------------------
consensus_7283#1      GTCCC------------------------------------------------------- 419
                                                                                  

consensus_7283#0      AATAAAATTACCACCTCAAGCATTATTGACCATAATATTGTGAAGTATTAACAAAACAAA 573
consensus_7283#2      ------------------------------------------------------------
consensus_7283#1      ------------------------------------------------------------
                                                                                  

consensus_7283#0      AAGGATAAGATTTCGTTTTTGTGACTTATTAGGT 607
consensus_7283#2      ----------------------------------
consensus_7283#1      ----------------------------------