cluster # 7284

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Schistosoma mansoni
cluster # 7284 cluster # 7284 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7284#0 length = 822 sequences # 2

consensus_7284#1 length = 365 sequences # 1
consensus_7284#2 length = 305 sequences # 2

consensusID : consensus_7284#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 822
fasta sequence

                              [TCGGTGCAAATAATCCCCTGGTTCTGAATCTATTCAGAAGAGCTACCAAAACTTAAGAAGAAGATGAGGTAAGGGAGAAAAATAAGAATAAACATCTCCAGATTTAAAAATTTTCACGAGCATATTTATAAAAAAGCATTAAAAAGGAACGCTCTATTTTTCAACACCAACTCAAGTGGAATATTTTGGATAAGTATCGTAGTTTTACCTTACTGCCACAGAACGACAGAAGAATTGCAACTCACCTTGAAAAGTATGCAGAATTAAAGTCTTCTATGAAACAAAAAACTCAAAATGCTTTAGTTCGAATTAGCAGAAGACTCCGTTTACATCCACACAAAATCAGTCAGTCAGTCAGTTAGCGACAACGTAGGACCAGGCACATATATGCATCGGTCCAAGTTGCCATACCTCGTTAGCACAACAAGATCAACAACAAATTCATAGAAGTAATTAATTTAGTGGTGGTAGTATATAAAGAAAGGTTGTATATAAGGATATAGTACAGGAAGGAAAAAAGTTATGAAGCAATTTTAATCTCAAGGTTTAAGGGAAGATAAAGAGTGTATACACCTACGCCATTGTGATCGATTCTGAGCCATGTCACCTACAGTCTCCAACCATTGGTTACGATAGTCGTGCGGATCCCAACCAAGTAGCCTGCATCTACCAGCATGGCTTAGACTAGGTGTTGACTACCAATCAATTTAACTAATACACTTCCCACTATCCTTAAAGATCTCTGTTGTTAACGTGTAGAAATATGTAATCACTGGGAATACACCTGACCGTTGCTGCTACCGTGACGTGGTGGTCGGGCTT]

[+] EMBL CD161105             [TCGGTGCAAATAATCCCCTGGTTCTGAATCTATTCAGAAGAGCTACCAAAACTTAAGAAGAAGATGAGGTAAGGGAGAAAAATAAGAATAAACATCTCCAGATTTAAAAATTTTCACGAGCATATTTATAAAAAAGCATTAAAAAGGAACGCTCTATTTTTCAACACCAACTCAAGTGGAATATTTTGGATAAGTATCGTAGTTTTACCTTACTGCCACAGAACGACAGAAGAATTGCAACTCACCTTGAAAAGTATGCAGAATTAAAGTCTTCTATGAAACAAAAAACTCAAAATGCTTTAGTTCGAATTAGCAGAAGACTCCGTTTACATCCACACAAAATCAGTCAGTCAGTCAGTTAGCGACAACGTAGGACCAGGCACATATATGCATCGGTCCAAGTTGCCATACCTCGTTAGCACAACAAGATCAACAACAAATTCATAGAAGTAATTAATTTAGTGGTGGTAGTATATAAAGAAAGGTTGTATATAAGGATATAGTACAGGAAGGAAAAAAGTTATGAAGCAATTTTAATCTCAAGGTTTAAGGGAAGATAAAGAGTGTATACACCTACGCCATTGTGATCGATTCTGAGCCATGTCAC                                                                                                                                                                                                                       ]
[-] EMBL CD128184             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GATATAGTATAGTAAGGAAGAAAGTTATGAAGCAATTTTAATCTCAAGGTTTAAGGGAAGATGAAGAGTATATACACCTACGCCATTGTGATCGATTCTGAGTCATGTCACCTACAGTCTCCAACCATTGGTTACGATAGTCGTGCGGATCCCAACCAAGTAGCCTGCATCTACCAGCATGGCTTAGACTAGGTGTTGACTACCAATCAATTTAACTAATACACTTCCCACTATCCTTAAAGATCTCTGTTGTTAACGTGTAGAAATATGTAATCACTGGGAATACACCTGACCGTTGCTGCTACCGTGACGTGGTGGTCGGGCTT]




>consensus_7284#0
TCGGTGCAAATAATCCCCTGGTTCTGAATCTATTCAGAAGAGCTACCAAAACTTAAGAAG
AAGATGAGGTAAGGGAGAAAAATAAGAATAAACATCTCCAGATTTAAAAATTTTCACGAG
CATATTTATAAAAAAGCATTAAAAAGGAACGCTCTATTTTTCAACACCAACTCAAGTGGA
ATATTTTGGATAAGTATCGTAGTTTTACCTTACTGCCACAGAACGACAGAAGAATTGCAA
CTCACCTTGAAAAGTATGCAGAATTAAAGTCTTCTATGAAACAAAAAACTCAAAATGCTT
TAGTTCGAATTAGCAGAAGACTCCGTTTACATCCACACAAAATCAGTCAGTCAGTCAGTT
AGCGACAACGTAGGACCAGGCACATATATGCATCGGTCCAAGTTGCCATACCTCGTTAGC
ACAACAAGATCAACAACAAATTCATAGAAGTAATTAATTTAGTGGTGGTAGTATATAAAG
AAAGGTTGTATATAAGGATATAGTACAGGAAGGAAAAAAGTTATGAAGCAATTTTAATCT
CAAGGTTTAAGGGAAGATAAAGAGTGTATACACCTACGCCATTGTGATCGATTCTGAGCC
ATGTCACCTACAGTCTCCAACCATTGGTTACGATAGTCGTGCGGATCCCAACCAAGTAGC
CTGCATCTACCAGCATGGCTTAGACTAGGTGTTGACTACCAATCAATTTAACTAATACAC
TTCCCACTATCCTTAAAGATCTCTGTTGTTAACGTGTAGAAATATGTAATCACTGGGAAT
ACACCTGACCGTTGCTGCTACCGTGACGTGGTGGTCGGGCTT

consensusID : consensus_7284#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 365
fasta sequence

                              [ATGAGTGATCGCGAAAGATCAGAGTATAAAGATGTTATTCAGGGAGTATAATGCAGTGAAATAAATTTGGAAAAAGAAAATTAATATGGACATGAGGAATTCAGAAGATTAAAATTTGGCAGAACACAAAGAGTGGATGCACTTTCTGCATTGCAAACGGTTTTGAGCCATGTCATTCAAAGTCTCTAACCATAGATTGCTATCATTTTGCGGATCCCAACCAGGTATTCTACACCTACCAACAGGGCTCAGTCCAATTGTCAGTGATTTCATAGATTTGTGCCACGTTTTGGTCTGGTTGCCCCTATCTTTCTTCCAACCTACTCCTACACCATAAAACACTGCACGTCTGGGCAGTCGGTGGT]

[+] EMBL CD114439             [ATGAGTGATCGCGAAAGATCAGAGTATAAAGATGTTATTCAGGGAGTATAATGCAGTGAAATAAATTTGGAAAAAGAAAATTAATATGGACATGAGGAATTCAGAAGATTAAAATTTGGCAGAACACAAAGAGTGGATGCACTTTCTGCATTGCAAACGGTTTTGAGCCATGTCATTCAAAGTCTCTAACCATAGATTGCTATCATTTTGCGGATCCCAACCAGGTATTCTACACCTACCAACAGGGCTCAGTCCAATTGTCAGTGATTTCATAGATTTGTGCCACGTTTTGGTCTGGTTGCCCCTATCTTTCTTCCAACCTACTCCTACACCATAAAACACTGCACGTCTGGGCAGTCGGTGGT]




>consensus_7284#1
ATGAGTGATCGCGAAAGATCAGAGTATAAAGATGTTATTCAGGGAGTATAATGCAGTGAA
ATAAATTTGGAAAAAGAAAATTAATATGGACATGAGGAATTCAGAAGATTAAAATTTGGC
AGAACACAAAGAGTGGATGCACTTTCTGCATTGCAAACGGTTTTGAGCCATGTCATTCAA
AGTCTCTAACCATAGATTGCTATCATTTTGCGGATCCCAACCAGGTATTCTACACCTACC
AACAGGGCTCAGTCCAATTGTCAGTGATTTCATAGATTTGTGCCACGTTTTGGTCTGGTT
GCCCCTATCTTTCTTCCAACCTACTCCTACACCATAAAACACTGCACGTCTGGGCAGTCG
GTGGT

consensusID : consensus_7284#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 305
fasta sequence

                              [GGACAGGTGGAGCTGGGAATTCACTTGCCGTCGTGCGCCAGACCATGGAAGTACAGCCGCTTGACGCAACGTGGAACATGTCCTGGTCCTGCGTTAGCTGCACGACACTAACAGCTGAAACCGCCCACGATCGACCCGGGTCAGAGTCAAGTAACCTCACCACAACGCGCACTGAAACACACAAAGCAGCAAAGAAACCAGCCTCCAACTGGACCGACACGTATCTGATCTCGGCCTGTCTGACTCGGCCCCCAGAGCCAATCCTTCTCCCGAAGTTACGGATCATATTTGCCGACTTCCCTTAC]

[-] EMBL CD069725             [GGACAGGTGGAGCTGGGAATTCACTTGCCGTCGTGCGCCAGACCATGGAAGTACAGCCGCTTGACGCAACGTGGAACATGTCCTGGTCCTGC                                                                                                                                                                                                                     ]
[+] EMBL CD130144             [                        taGCCGTCGCGCGCCAGACCATGGAAGTACAGCTGCTTGACGCAATGTGG ACATGTCCTCGCGCGTTGTTAGCTGCACGACACTAACAGCTGAAACCGCCCACGATCGACCCGGGTCAGAGTCAAGTAACCTCACCACAACGCGCACTGAAACACACAAAGCAGCAAAGAAACCAGCCTCCAACTGGACCGACACGTATCTGATCTCGGCCTGTCTGACTCGGCCCCCAGAGCCAATCCTTCTCCCGAAGTTACGGATCATATTTGCCGACTTCCCTTAC]




>consensus_7284#2
GGACAGGTGGAGCTGGGAATTCACTTGCCGTCGTGCGCCAGACCATGGAAGTACAGCCGC
TTGACGCAACGTGGAACATGTCCTGGTCCTGCGTTAGCTGCACGACACTAACAGCTGAAA
CCGCCCACGATCGACCCGGGTCAGAGTCAAGTAACCTCACCACAACGCGCACTGAAACAC
ACAAAGCAGCAAAGAAACCAGCCTCCAACTGGACCGACACGTATCTGATCTCGGCCTGTC
TGACTCGGCCCCCAGAGCCAATCCTTCTCCCGAAGTTACGGATCATATTTGCCGACTTCC
CTTAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7284#0      TCGGTGCAAATAATCCCCTGGTTCTGAATCTATTCAGAAGAGCTACCAAAACTTAAGAAG 60
consensus_7284#1      ------------------------------------------------------------
consensus_7284#2      ------------------------------------------------------------
                                                                                  

consensus_7284#0      AAGATGAGGTAAGGGAGAAAAATAAGAATAAACATCTCCAGATTTAAAAATTTTCACGAG 120
consensus_7284#1      ------------------------------------------------------------
consensus_7284#2      ------------------------------------------------------------
                                                                                  

consensus_7284#0      CATATTTATAAAAAAGCATTAAAAAGGAACGCTCTATTTTTCAACACCAACTCAAGTGGA 180
consensus_7284#1      ------------------------------------------------------------
consensus_7284#2      ------------------------------------------------------------
                                                                                  

consensus_7284#0      ATATTTTGGATAAGTATCGTAGTTTTACCTTACTGCCACAGAACGACAGAAGAATTGCAA 240
consensus_7284#1      ------------------------------------------------------------
consensus_7284#2      ------------------------------------------------------------
                                                                                  

consensus_7284#0      CTCACCTTGAAAAGTATGCAGAATTAAAGTCTTCTATGAAACAAAAAACTCAAAATGCTT 300
consensus_7284#1      ------------------------------------------------------------
consensus_7284#2      ------------------------------------------------------------
                                                                                  

consensus_7284#0      TAGTTCGAATTAGCAGAAGACTCCGTTTACATCCACACAAAATCAGTCAGTCAGTCAGTT 360
consensus_7284#1      ------------------------------------------------------------
consensus_7284#2      ------------------------------------------------------------
                                                                                  

consensus_7284#0      AGCGACAACGTAGGACCAGGCACATATATGCATCGGTCCAAGTTGCCATACCTCGTTAGC 420
consensus_7284#1      ------------------------------------------------------------
consensus_7284#2      ------------------------------------------------------------
                                                                                  

consensus_7284#0      ACAACAAGATCAACAACAAATTCATAGAAGTAATTAATTTAGTGGTGGTAGTATATAAAG 480
consensus_7284#1      -----ATGAGTGATCGCGAAAG-ATCAGAGTA-TAAAGATGTTATTCAGGGAGTATAATG 53
consensus_7284#2      ------------------------------------------------------------
                                                                                  

consensus_7284#0      AAAGGTTGTATATAAGGATATAGTACAGGAAGGAAAAAAGT-TATGAAGCAATTTTAATC 539
consensus_7284#1      CAGTGAAATAAATTTGGAAAAAGAA----AATTAATATGGA-CATGAGGAATTCAGAAGA 108
consensus_7284#2      -------GGACAGGTGGAGCTGGGAATTCACTTGCCGTCGTGCGCCAGACCATGGAAGTA 53
                               * *   ***    * *    *         *      *     *   *   

consensus_7284#0      TCAAGGTTTAAGGGAAGATAAAGAGTGTATACACCTACGCCATTGTGATCGATTCTGAGC 599
consensus_7284#1      TTAAAATTTGGCAGAACACAAAGAGTGGATGCACTTTCTGCATTGCAAACGGTTTTGAGC 168
consensus_7284#2      CAGCCGCTTGACGCAACGTGGAACATGT-----CCTGGTCC--TGCGTTAGCTGCACGAC 106
                             **     **     *   **      * *    *  **     * *      *

consensus_7284#0      CATGTCACCTACAGTCTCCAACCATTGGTTACGATAGTCGTGCGG-ATCCCAACCAAGTA 658
consensus_7284#1      CATGTCATTCAAAGTCTCTAACCATAGATTGCTATCATTTTGCGG-ATCCCAACCAGGTA 227
consensus_7284#2      ACTAACAGCTGAAACCGCCCACGATCGACCCGGGTCAGAGTCAAGTAACCTCACCA--CA 164
                        *  **     *  * *  ** ** *       *     *   * * **  ****   *

consensus_7284#0      GCCTGCATCTACCAGCATGGCTTAGACTAGGTGTTGACTACCA-ATCAATTTAACTAATA 717
consensus_7284#1      TTCTACACCTACCAACAGGGCTCAGTCCAATTGTCAGTGATTTCATAGATTTG--TGCCA 285
consensus_7284#2      ACGCGCACTGAAACACACAAAGCAGCAAAGAAACCAGCCTCCAACTGGACCGA---CACG 221
                           **   *    **      **   *                *  *           

consensus_7284#0      CACTTCCCACTATCCTTAAAGATCTCTGTTGTTAACGTGTAGAAATATGTAATCACTGGG 777
consensus_7284#1      CGTTTTGGTCTGGTTGCCCCTATCTTTCTT-CCAACCTACTCCTACACCATAAAACACTG 344
consensus_7284#2      TATCTGATCTCGGCCTGTCTGACTCGGCCCCCAGAGCCAATCCTTCTCCCGAAGTTACGG 281
                          *                *            *                *       *

consensus_7284#0      AATACACCTGACCGTTGCTGCTACCGTGACGTGGTGGTCGGGCTT 822
consensus_7284#1      CACGT-CTGGGCAGTCGGTGGT----------------------- 365
consensus_7284#2      ATCATATTTGCCGACTTCCCTTAC--------------------- 305
                               * *         *