cluster # 7286

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Schistosoma mansoni
cluster # 7286 cluster # 7286 Sequences # 5 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7286#0 length = 432 sequences # 1
consensus_7286#1 length = 360 sequences # 2

consensus_7286#2 length = 225 sequences # 1
consensus_7286#3 length = 187 sequences # 1

consensusID : consensus_7286#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 432
fasta sequence

                              [AGGTCCTGAAGGTCACCTTACGGTCGTTCAAAGGTCGTCCATAAACCAACGAAAATCCGAAAAATTCAGGCAGAATTTGTATATGAGAAAATTTCCATCTAAATTCAATTATATGGACACGCCTACAAACTCTATCAATCCGACTCCATTGTTGCTTAATGTTTTCTTTTCAATATAATGAATTCAACTACAAGCTGATCGTTTTGACTGGCGTGGAAAATTCTAGTCAATATACAAAACGAGAAAACTTTCACTTCAATCTAATACCATTCTGCGACATGGTCCCTCCTGATCCAACCTTCTCACAGATGAGGGATATTGTTTGTGGCAATAGTTTGACCATAAGTGATGATCAACCGAACCAATCAAACAGGAATAACTCAAATATAAATGCTAAATCCCCCAAAGATAAGTCCAGATTACGACAATGTN]

[+] EMBL CD083516             [AGGTCCTGAAGGTCACCTTACGGTCGTTCAAAGGTCGTCCATAAACCAACGAAAATCCGAAAAATTCAGGCAGAATTTGTATATGAGAAAATTTCCATCTAAATTCAATTATATGGACACGCCTACAAACTCTATCAATCCGACTCCATTGTTGCTTAATGTTTTCTTTTCAATATAATGAATTCAACTACAAGCTGATCGTTTTGACTGGCGTGGAAAATTCTAGTCAATATACAAAACGAGAAAACTTTCACTTCAATCTAATACCATTCTGCGACATGGTCCCTCCTGATCCAACCTTCTCACAGATGAGGGATATTGTTTGTGGCAATAGTTTGACCATAAGTGATGATCAACCGAACCAATCAAACAGGAATAACTCAAATATAAATGCTAAATCCCCCAAAGATAAGTCCAGATTACGACAATGTN]




>consensus_7286#0
AGGTCCTGAAGGTCACCTTACGGTCGTTCAAAGGTCGTCCATAAACCAACGAAAATCCGA
AAAATTCAGGCAGAATTTGTATATGAGAAAATTTCCATCTAAATTCAATTATATGGACAC
GCCTACAAACTCTATCAATCCGACTCCATTGTTGCTTAATGTTTTCTTTTCAATATAATG
AATTCAACTACAAGCTGATCGTTTTGACTGGCGTGGAAAATTCTAGTCAATATACAAAAC
GAGAAAACTTTCACTTCAATCTAATACCATTCTGCGACATGGTCCCTCCTGATCCAACCT
TCTCACAGATGAGGGATATTGTTTGTGGCAATAGTTTGACCATAAGTGATGATCAACCGA
ACCAATCAAACAGGAATAACTCAAATATAAATGCTAAATCCCCCAAAGATAAGTCCAGAT
TACGACAATGTN

consensusID : consensus_7286#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 360
fasta sequence

                              [TTTGAATTATTGAATTACCTATAAAGTGACAATATTTAGGGAAGTTACAACACTAAAATTAAATGCAAAGTTCAAAGATAAGCTTGAATATATCAGAGATTGTGAAAATCAAGCCAAAGCCTCTGGGTCCCCGGTTAGGAGTACTGATAATTCATTTACATTAGAAGGAATGTTCTCTTCTCTTTTTCTGATCAATGATTGTCTAACTGCATCTTCAATTTGTCCCAGACGTTTACGAACACGAAGAGCAGAGAGGCGCACAGACCAATCATCATGCCAACATTCTTGTATCACTTGTGCATAGCAGGATAAGTAGGTGTCATCTAACCAGCGCTGGTAAATACGAGGCCTACAAGTAAC]

[-] EMBL CD078753             [TTTGAATTATTGAATTACCTATAAAGTGACAATATTTAGGGAAGTTACAACACTAAAATTAAATGCAAAGTTCAAAGATAAGCTTGAATATATCAGAGATTGTGAAAATCAAGCCAAAGCCTCTGGGTCCCCGGTTAGGAGTACTGATAATTCATTTACATTAGAAGGAATGTTCTCTTCTCTTTTTCTGATCAATGATTGTCTAACTGCATCTTCAATTTGTCCCAGACGTTTACGAACACGAAGAGCAGAGAGGCGCACAGACCAATCATCATGCCAACATTCTTGTATCACTTGTGCATAGCAGGATAAGTAGGTGTCATCTAACCAGCGCTGGTAAATACGAGGCCTACAAGTAAC]
[+] EMBL CD073213             [TTTGAATTATTGAATTACCTATAAAGTGACAATATTTAGGGAAGTTACAACACTAAAATTAAATGCAAAGTTCAAAGATAAGCTTGAATATATCAGAGATTGTGAAAATCAAGCCAAAGCCTCTGGGTCCCCGGTTAGGAGTACTGATAATTCATTTACATTAAAAGGAATGTTCTCTTCTCTTTTTCTGATCAATGATTGTCTAACTGCATCTTCAATTTGTCCCAGACGTTTACGAACACGAAGAGCAGAGAGGCGCACAGACCAATCATCATGCCAACATTCTTGTATCACTTGTGCATAGCAGGATAAGTAGGTGTCATCTAACCAGCGCTGGTAAATACGAGGCCTACAATTAA ]




>consensus_7286#1
TTTGAATTATTGAATTACCTATAAAGTGACAATATTTAGGGAAGTTACAACACTAAAATT
AAATGCAAAGTTCAAAGATAAGCTTGAATATATCAGAGATTGTGAAAATCAAGCCAAAGC
CTCTGGGTCCCCGGTTAGGAGTACTGATAATTCATTTACATTAGAAGGAATGTTCTCTTC
TCTTTTTCTGATCAATGATTGTCTAACTGCATCTTCAATTTGTCCCAGACGTTTACGAAC
ACGAAGAGCAGAGAGGCGCACAGACCAATCATCATGCCAACATTCTTGTATCACTTGTGC
ATAGCAGGATAAGTAGGTGTCATCTAACCAGCGCTGGTAAATACGAGGCCTACAAGTAAC

consensusID : consensus_7286#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 225
fasta sequence

                              [GGATCCCGAATCTCGACAGTGTGCATAGCAGGATAAGTAGGTGTCATCTAACCAGCGCTGGTAAATACGAGGCCTACAATTAACATTGTCGTAATCTGGACTTATCTTGGGGGATTTAGCATTTATATTTGAGTTCACCCTTACTCTTTGTTGACGCCCAACCAGGAAGTCTTTTATCCACATCAATAGATTGCCTCCAATCCCGACATTCCTTAGCTTATATAA]

[+] EMBL CD061219             [GGATCCCGAATCTCGACAGTGTGCATAGCAGGATAAGTAGGTGTCATCTAACCAGCGCTGGTAAATACGAGGCCTACAATTAACATTGTCGTAATCTGGACTTATCTTGGGGGATTTAGCATTTATATTTGAGTTCACCCTTACTCTTTGTTGACGCCCAACCAGGAAGTCTTTTATCCACATCAATAGATTGCCTCCAATCCCGACATTCCTTAGCTTATATAA]




>consensus_7286#2
GGATCCCGAATCTCGACAGTGTGCATAGCAGGATAAGTAGGTGTCATCTAACCAGCGCTG
GTAAATACGAGGCCTACAATTAACATTGTCGTAATCTGGACTTATCTTGGGGGATTTAGC
ATTTATATTTGAGTTCACCCTTACTCTTTGTTGACGCCCAACCAGGAAGTCTTTTATCCA
CATCAATAGATTGCCTCCAATCCCGACATTCCTTAGCTTATATAA

consensusID : consensus_7286#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 187
fasta sequence

                              [ATTAGCACGATGTACTCAGGGGATAGCATCTGAATTCGTTGAAGGATATCAGATACCATTCTGCGACATGGTCCCTCCTGATCCAACCTTCTCACAGATGAGGGATATTGTTTGTGGCAATAGTTTGACCATAAGTGATGATCAACCGAACCAATCAAACAGGAATAACTCAAATATAAATGCTAAA]

[+] EMBL CD137946             [ATTAGCACGATGTACTCAGGGGATAGCATCTGAATTCGTTGAAGGATATCAGATACCATTCTGCGACATGGTCCCTCCTGATCCAACCTTCTCACAGATGAGGGATATTGTTTGTGGCAATAGTTTGACCATAAGTGATGATCAACCGAACCAATCAAACAGGAATAACTCAAATATAAATGCTAAA]




>consensus_7286#3
ATTAGCACGATGTACTCAGGGGATAGCATCTGAATTCGTTGAAGGATATCAGATACCATT
CTGCGACATGGTCCCTCCTGATCCAACCTTCTCACAGATGAGGGATATTGTTTGTGGCAA
TAGTTTGACCATAAGTGATGATCAACCGAACCAATCAAACAGGAATAACTCAAATATAAA
TGCTAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7286#0      AGGTCCTGAAGGTCACCTTACGGTCGTTCAAAGGTCGTCCATAAACCAACGAAAATCCGA 60
consensus_7286#3      ------------------------------------------------------------
consensus_7286#1      -----------------------------------------------TTTGAATTATTGA 13
consensus_7286#2      ------------------------------------------------------------
                                                                                  

consensus_7286#0      AAAATTCAGGCAGAATTTGTATATGAGAAAATTTCCATCTAAATTCAATTATATGGACAC 120
consensus_7286#3      ------------------------------------------------------------
consensus_7286#1      ATTACCTATAAAGTGACAATATTTAGGGAAGTTACAACACTAAAATTAAATGCAAAGTTC 73
consensus_7286#2      ------------------------------------------------------------
                                                                                  

consensus_7286#0      GCCTACAAACTCTATCAATCCGACTCCATTGTTGCTTAATGTTTTCTTTTCAATATAATG 180
consensus_7286#3      ------------------------------------------------------------
consensus_7286#1      AAAGATAAGCTTGAATATATCAGAGATTGTGAAAATCAAGCCAAAGCCTCTGGGTCCCCG 133
consensus_7286#2      -----GGATCCCGAAT---CTCGACAGTGTGCATAGCAGGATAAG-----TAGGTGTCAT 47
                                                                                  

consensus_7286#0      AATTCAACTACAAGCTGATCGTTTTGACTGGCGTGGAAAA--TTCTAGTCAATATACAAA 238
consensus_7286#3      --------------------------ATTAGCACGA-------TGTACTCAGGGGATAGC 27
consensus_7286#1      GTTAGGAGTACTGATAATTCATTTACATTAGAAGGAATG---TTCTCTTCTCTTTTTCTG 190
consensus_7286#2      CTAACCAGCGCTGGTAAAT-ACGAGGCCTACAATTAACATTGTCGTAATCTGGACTTATC 106
                                                  *                *  **          

consensus_7286#0      ACGAGAAAACTTTCACTTCAATCTAATACCATT-CTGCGACATGGTCCCTCCTGATCCAA 297
consensus_7286#3      ATCTGAATTCGTTGAAGGATATCAGATACCATT-CTGCGACATGGTCCCTCCTGATCCAA 86
consensus_7286#1      ATCAATGATTGTCTAACTGCATCT----TCAAT-TTGTCCCA-GACGTTTACGAACACGA 244
consensus_7286#2      TTGGGGGATTTAGCATTTATATTTGAGTTCACCCTTACTCTTTGTTGACGCCCAACCAGG 166
                                    *     **       **    *       *       *  *     

consensus_7286#0      CCTTCTCACAGATGAG--GGATATTGTTTGTGGCAATAGTTTGACCATAAGTGATGATCA 355
consensus_7286#3      CCTTCTCACAGATGAG--GGATATTGTTTGTGGCAATAGTTTGACCATAAGTGATGATCA 144
consensus_7286#1      AGAGCAGAGAGGCGCACAGACCAATCATCATGCCAACATTCTTGT-ATCACTTGTGCATA 303
consensus_7286#2      AAGTCTTTTATCCACA----TCAATAGAT-TGCCTCCAATCCCGACATTCCTTA-GCTTA 220
                          *    *            * *     ** *   * *      **   *   *   *

consensus_7286#0      ACCGAACCAATCAAACAGGAATAACTCAAATATAAATGCTAAATCCCCCAAAGATAAGTC 415
consensus_7286#3      ACCGAACCAATCAAACAGGAATAACTCAAATATAAATGCTAAA----------------- 187
consensus_7286#1      GCAGGAT-----AAGTAGGTGTCATCTAACCAGCGCTGGTAAATACGAGGCCTACAAGTA 358
consensus_7286#2      TATAA------------------------------------------------------- 225
                                                                                  

consensus_7286#0      CAGATTACGACAATGTN 432
consensus_7286#3      -----------------
consensus_7286#1      AC--------------- 360
consensus_7286#2      -----------------