These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7286#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 432 fasta sequence [AGGTCCTGAAGGTCACCTTACGGTCGTTCAAAGGTCGTCCATAAACCAACGAAAATCCGAAAAATTCAGGCAGAATTTGTATATGAGAAAATTTCCATCTAAATTCAATTATATGGACACGCCTACAAACTCTATCAATCCGACTCCATTGTTGCTTAATGTTTTCTTTTCAATATAATGAATTCAACTACAAGCTGATCGTTTTGACTGGCGTGGAAAATTCTAGTCAATATACAAAACGAGAAAACTTTCACTTCAATCTAATACCATTCTGCGACATGGTCCCTCCTGATCCAACCTTCTCACAGATGAGGGATATTGTTTGTGGCAATAGTTTGACCATAAGTGATGATCAACCGAACCAATCAAACAGGAATAACTCAAATATAAATGCTAAATCCCCCAAAGATAAGTCCAGATTACGACAATGTN] [+] EMBL CD083516 [AGGTCCTGAAGGTCACCTTACGGTCGTTCAAAGGTCGTCCATAAACCAACGAAAATCCGAAAAATTCAGGCAGAATTTGTATATGAGAAAATTTCCATCTAAATTCAATTATATGGACACGCCTACAAACTCTATCAATCCGACTCCATTGTTGCTTAATGTTTTCTTTTCAATATAATGAATTCAACTACAAGCTGATCGTTTTGACTGGCGTGGAAAATTCTAGTCAATATACAAAACGAGAAAACTTTCACTTCAATCTAATACCATTCTGCGACATGGTCCCTCCTGATCCAACCTTCTCACAGATGAGGGATATTGTTTGTGGCAATAGTTTGACCATAAGTGATGATCAACCGAACCAATCAAACAGGAATAACTCAAATATAAATGCTAAATCCCCCAAAGATAAGTCCAGATTACGACAATGTN] consensusID : consensus_7286#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 360 fasta sequence [TTTGAATTATTGAATTACCTATAAAGTGACAATATTTAGGGAAGTTACAACACTAAAATTAAATGCAAAGTTCAAAGATAAGCTTGAATATATCAGAGATTGTGAAAATCAAGCCAAAGCCTCTGGGTCCCCGGTTAGGAGTACTGATAATTCATTTACATTAGAAGGAATGTTCTCTTCTCTTTTTCTGATCAATGATTGTCTAACTGCATCTTCAATTTGTCCCAGACGTTTACGAACACGAAGAGCAGAGAGGCGCACAGACCAATCATCATGCCAACATTCTTGTATCACTTGTGCATAGCAGGATAAGTAGGTGTCATCTAACCAGCGCTGGTAAATACGAGGCCTACAAGTAAC] [-] EMBL CD078753 [TTTGAATTATTGAATTACCTATAAAGTGACAATATTTAGGGAAGTTACAACACTAAAATTAAATGCAAAGTTCAAAGATAAGCTTGAATATATCAGAGATTGTGAAAATCAAGCCAAAGCCTCTGGGTCCCCGGTTAGGAGTACTGATAATTCATTTACATTAGAAGGAATGTTCTCTTCTCTTTTTCTGATCAATGATTGTCTAACTGCATCTTCAATTTGTCCCAGACGTTTACGAACACGAAGAGCAGAGAGGCGCACAGACCAATCATCATGCCAACATTCTTGTATCACTTGTGCATAGCAGGATAAGTAGGTGTCATCTAACCAGCGCTGGTAAATACGAGGCCTACAAGTAAC] [+] EMBL CD073213 [TTTGAATTATTGAATTACCTATAAAGTGACAATATTTAGGGAAGTTACAACACTAAAATTAAATGCAAAGTTCAAAGATAAGCTTGAATATATCAGAGATTGTGAAAATCAAGCCAAAGCCTCTGGGTCCCCGGTTAGGAGTACTGATAATTCATTTACATTAAAAGGAATGTTCTCTTCTCTTTTTCTGATCAATGATTGTCTAACTGCATCTTCAATTTGTCCCAGACGTTTACGAACACGAAGAGCAGAGAGGCGCACAGACCAATCATCATGCCAACATTCTTGTATCACTTGTGCATAGCAGGATAAGTAGGTGTCATCTAACCAGCGCTGGTAAATACGAGGCCTACAATTAA ] consensusID : consensus_7286#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 225 fasta sequence [GGATCCCGAATCTCGACAGTGTGCATAGCAGGATAAGTAGGTGTCATCTAACCAGCGCTGGTAAATACGAGGCCTACAATTAACATTGTCGTAATCTGGACTTATCTTGGGGGATTTAGCATTTATATTTGAGTTCACCCTTACTCTTTGTTGACGCCCAACCAGGAAGTCTTTTATCCACATCAATAGATTGCCTCCAATCCCGACATTCCTTAGCTTATATAA] [+] EMBL CD061219 [GGATCCCGAATCTCGACAGTGTGCATAGCAGGATAAGTAGGTGTCATCTAACCAGCGCTGGTAAATACGAGGCCTACAATTAACATTGTCGTAATCTGGACTTATCTTGGGGGATTTAGCATTTATATTTGAGTTCACCCTTACTCTTTGTTGACGCCCAACCAGGAAGTCTTTTATCCACATCAATAGATTGCCTCCAATCCCGACATTCCTTAGCTTATATAA] consensusID : consensus_7286#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 187 fasta sequence [ATTAGCACGATGTACTCAGGGGATAGCATCTGAATTCGTTGAAGGATATCAGATACCATTCTGCGACATGGTCCCTCCTGATCCAACCTTCTCACAGATGAGGGATATTGTTTGTGGCAATAGTTTGACCATAAGTGATGATCAACCGAACCAATCAAACAGGAATAACTCAAATATAAATGCTAAA] [+] EMBL CD137946 [ATTAGCACGATGTACTCAGGGGATAGCATCTGAATTCGTTGAAGGATATCAGATACCATTCTGCGACATGGTCCCTCCTGATCCAACCTTCTCACAGATGAGGGATATTGTTTGTGGCAATAGTTTGACCATAAGTGATGATCAACCGAACCAATCAAACAGGAATAACTCAAATATAAATGCTAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7286#0 AGGTCCTGAAGGTCACCTTACGGTCGTTCAAAGGTCGTCCATAAACCAACGAAAATCCGA 60 consensus_7286#3 ------------------------------------------------------------ consensus_7286#1 -----------------------------------------------TTTGAATTATTGA 13 consensus_7286#2 ------------------------------------------------------------ consensus_7286#0 AAAATTCAGGCAGAATTTGTATATGAGAAAATTTCCATCTAAATTCAATTATATGGACAC 120 consensus_7286#3 ------------------------------------------------------------ consensus_7286#1 ATTACCTATAAAGTGACAATATTTAGGGAAGTTACAACACTAAAATTAAATGCAAAGTTC 73 consensus_7286#2 ------------------------------------------------------------ consensus_7286#0 GCCTACAAACTCTATCAATCCGACTCCATTGTTGCTTAATGTTTTCTTTTCAATATAATG 180 consensus_7286#3 ------------------------------------------------------------ consensus_7286#1 AAAGATAAGCTTGAATATATCAGAGATTGTGAAAATCAAGCCAAAGCCTCTGGGTCCCCG 133 consensus_7286#2 -----GGATCCCGAAT---CTCGACAGTGTGCATAGCAGGATAAG-----TAGGTGTCAT 47 consensus_7286#0 AATTCAACTACAAGCTGATCGTTTTGACTGGCGTGGAAAA--TTCTAGTCAATATACAAA 238 consensus_7286#3 --------------------------ATTAGCACGA-------TGTACTCAGGGGATAGC 27 consensus_7286#1 GTTAGGAGTACTGATAATTCATTTACATTAGAAGGAATG---TTCTCTTCTCTTTTTCTG 190 consensus_7286#2 CTAACCAGCGCTGGTAAAT-ACGAGGCCTACAATTAACATTGTCGTAATCTGGACTTATC 106 * * ** consensus_7286#0 ACGAGAAAACTTTCACTTCAATCTAATACCATT-CTGCGACATGGTCCCTCCTGATCCAA 297 consensus_7286#3 ATCTGAATTCGTTGAAGGATATCAGATACCATT-CTGCGACATGGTCCCTCCTGATCCAA 86 consensus_7286#1 ATCAATGATTGTCTAACTGCATCT----TCAAT-TTGTCCCA-GACGTTTACGAACACGA 244 consensus_7286#2 TTGGGGGATTTAGCATTTATATTTGAGTTCACCCTTACTCTTTGTTGACGCCCAACCAGG 166 * ** ** * * * * consensus_7286#0 CCTTCTCACAGATGAG--GGATATTGTTTGTGGCAATAGTTTGACCATAAGTGATGATCA 355 consensus_7286#3 CCTTCTCACAGATGAG--GGATATTGTTTGTGGCAATAGTTTGACCATAAGTGATGATCA 144 consensus_7286#1 AGAGCAGAGAGGCGCACAGACCAATCATCATGCCAACATTCTTGT-ATCACTTGTGCATA 303 consensus_7286#2 AAGTCTTTTATCCACA----TCAATAGAT-TGCCTCCAATCCCGACATTCCTTA-GCTTA 220 * * * * ** * * * ** * * * consensus_7286#0 ACCGAACCAATCAAACAGGAATAACTCAAATATAAATGCTAAATCCCCCAAAGATAAGTC 415 consensus_7286#3 ACCGAACCAATCAAACAGGAATAACTCAAATATAAATGCTAAA----------------- 187 consensus_7286#1 GCAGGAT-----AAGTAGGTGTCATCTAACCAGCGCTGGTAAATACGAGGCCTACAAGTA 358 consensus_7286#2 TATAA------------------------------------------------------- 225 consensus_7286#0 CAGATTACGACAATGTN 432 consensus_7286#3 ----------------- consensus_7286#1 AC--------------- 360 consensus_7286#2 ----------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||