These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7287#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1051 fasta sequence [ATATACATTTATTTCATAAAAAGCCAAGTTCATTACAAACAGAATGTATTGCAAAAATGTCCATCACAATATAAAGTACTATTCATTACGATCCCATGTTTAAGGGCGAACTTAGGTAAATCACAGCGTTGGAAATTATGTAAATGAAACTCATATTTGCTTTGCGTATGGATTTCCATTTCGTAAAACTGACCATTTATTGACGCATATAGATGAGCTAAATGGTAAAGGATTTAGGTTCAACCTTCTTTTATTTTTTGTGCCAAAAATACATGGTAAAAAGGAACAGGTTGATTTATTGGCATTTGTTTCTTCTTTTGAGATTGCTTTAACGCCTCTCAAAGTTTCAACTTGTGCAAACGAACTCGACCCAAGAATAGGTGCATACAGATGATATGTAGATGTAATTGTATTCGTAACGTTACGAATCAATTTCGAAGCACACACATTCCAATCGAAAGGATCAACAAGTGTTTCTAAACGAGAGATGAGTTCTTGAATCATTGATTGAATAAGTTTTGACGAGATATTTATTTGATTTTTCTGAGCAAGACTAGCTTCACTAACAGATACAGACGAAACTAATAAACGTTGGAGGGATTTTAAATCGAACATAATTTGTAAAGCTCGTGATTGCATTGACTTTTGCAAAGAATCCGAAAACCATATTGATGCTTCGTCTGTGCAATGAATGGATATATTCTGGTATGACAGCAATTCGTCAACAATACTGGAGTATATTTCAAATAATGAGGTGCATACTTTAGATAAAAGTAGGTGACTAAATGGTGATGGAAGTGATTTATGTACAAGAAATTTTCCCATTGTATAGACAATATTTAGAAGTAAATGATGTGTTGGTAGTGAAAGTTGTGAAGGTATACGCACAACAGCAGACGAATTACCATCAACATCTGTAGATTCAGAAGAATGTATTTCAAGTCGGACTTCTTCAAAAGGTATTATACTGTTCAGTATAGCATCTGTGTTAGCGTATTTCATTAAAAGAAATTCAACTTCATTTTTATTAAAAACTAAGTCCGTCCTCGTA] [+] EMBL CD075696 [ATATACATTTATTTCATAAAAAGCCAAGTTCATTACAAACAGAATGTATTGCAAAAATGTCCATCACAATATAAAGTACTATTCATTACGATCCCATGTTTAAGGGCGAACTTAGGTAAATCACAGCGTTGGAAATTATGTAAATGAAACTCATATTTGCTTTGCGTATGGATTTCCATTTCGTAAAACTGACCATTTATTGACGCATATAGATGAGCTAAATGGTAAAGGATTTAGGTTCAACCTTCTTTTATTTTTTGTGCCAAAAATACATGGTAAAAAGGAACAGGTTGATTTATTGGCATTTGTTTCTTCTTTTGAGATTGCTTTAACGCCTCTCAAAGTTTCAACTTGTGCAAACGAACTCGACCCAAGAATAGGTGCATACAGATGATATGTAGATGTAATTGTATTCGTAACGTTACGAATCAATTTCGAAGCACACACATTCCAATCGAAAGGATCAACAAGTGTT ] [+] EMBL CD142265 [ TGGCAAAAAGGAACAGGGTGATTTATTGTCATTTGTTTCTTCTTTTGAGATTGCTTTAACGCCTCTCAAAGTTTCAACTTGTGCAAACGAACTCGACCCAAGAATAGGTGCATACAGATGATATGTAGATGTAATTGTATTCGTAACGTTACGAATCAATTTCGAAGCACACACATTCCAATCGAAAGGATCAACAAGTGTTTCTAAACGAGAGATGAGTTCTTGAATCATTGATTGAATAAGTTTTGACGAGATATTTATTTGATTTTTCTGAGCAAGACTAGCTTCACTAACAGATACAGACGAAACTAATAAACGTTGGAGGGATTTTAAATCGAACATAATTTGTAAAGCTCGTGATT ] [-] EMBL CD082081 [ TCGAAGCACACACATTCCAATCGAAAGGATCAACAAGTGTTTCTAAACGAGAGATGAGTTCTTGAATCATTGATTGAATAAGTTTTGACGAGATATTTATTTGATTTTTCTGAGCAAGACTAGCTTCACTAACAGATACAGACGAAACTAATAAACGTTGGAGGAATTTTAAATCGAACATAATTTGTAAAGCTCGTGATTGCATTGACTTTTGCAAAGAATCCGAAAACCATATTGATGCTTCGTCTGTGCAATGAATGGATATATTCTGGTATGACAGCAATTCGTCAACAATACTGGAGTATATTTCAAATAATGAGGTGCATACTTTAGATAAAAGTAGGTGACTAAATGGTGATGGAAGTGATTTATGTACAAGAAATTTTCCCATTGTATAGACAATATTTAGAAGTAAATGATGTGTTGGTAGTGAAAGTTGTGAAGGTATACGCACAACAGCAGACGAATTACCATCAACATCTGTAGATTCAGAAGAATGTATTTCAAGTCGGACTTCTTCAAAAGGTATTATACTGTTCAGTATAGCATCTGTGTTAGCGTATTTCATTAAAAGAAATTCAACTTCATTTTTATTAAAAACTAAGTCCGTCCTCGTA] consensusID : consensus_7287#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1005 fasta sequence [ATAGACATTTATTCCATAAAAAGCCAAGTTCATTACAAACAGAATGTATTGCAAAAATGTCCATCACAATATAAAGTACTATTCATTACGATCCCATGTTTAAGGGCGAACTTAGGTAAATCACAGCGTTGGAAATTATGTAAATGAGCTAGTAAAAAAATCAATAAAAAAGCATATAATACACAATTAAATATCCTTATAATATTAACAAATACCAATTAAGTAACTTTATATATATGAAATTCTACCAAAAATATGTTGATAATGACAAATAGCTAAGGGGATGAAAAATATTGTCTTCTATTATATCCAACGAAACTAAACTAAGAATAGAAGAAACAGAAATTTTTGTATACTAAATTAACTTCGCAATGCCGATAAATCACCTGACTCATTTCGGAAATTCTATCAACCTTAATGGGTTGGTATCTAACAAAACCTCAGCACGGATTCAGTAAACTTGATTTTCTGATGAATTATGTAACCAGTGACGTAGTCGAGATATTCGTCTTCTAATCAAAGAACAGTTTTACTAAGCACCAGTTCACTGTGTTCTACTATATGGGTGGACCATGGCAATCAACAGTACATGATATTCATAGGTTACTATTATTCGATCATTAATATCTTCAAAGTATCGCTATGTTTTGGGGATAACGAGTGGTCAAACCTGAGGTGTGGAATAGGATACTAAATGACAATGGCAAAACGGTTGATGAAGTAGTGAACCGTCAACTTCTGGAGTGGTTAAGAAATATTTACTAGAGTTCCAAGCATTAAATCGTGATCAGAGCGAAATTCAGTGTGGTCACGCATTTAAATGATCTTATATTGTTGCGGAAATGTCCATTTAAATTCCTAAATAGTCATTATTTTATATTTGTTTGCACTTATCTGGAAAAGATCTTAGAGGAACTGATGGGATCTATGCCTTCAGAAAGACCCAAATCCCAGTCAATCAGTATGAAGAAGTTATTCTCCTCGTGCCGAATTTTTGGCCCGAAG] [+] EMBL CD074540 [ATAGACATTTATTCCATAAAAAGCCAAGTTCATTACAAACAGAATGTATTGCAAAAATGTCCATCACAATATAAAGTACTATTCATTACGATCCCATGTTTAAGGGCGAACTTAGGTAAATCACAGCGTTGGAAATTATGTAAATGAGCTAGTAAAAAAATCAATAAAAAAGCATATAATACACAATTAAATATCCTTATAATATTAACAAATACCAATTAAGTAACTTTATATATATGAAATTCTACCAAAAATATGTTGATAATGACAAATAGCTAAGGGGATGAAAAATATTGTCTTCTATTATATCCAACGAAACTAAACTAAGAATAGAAGAAACAGAAATTTTTGTATACTAAATTAACTTCGCAATGCCGATAAATCACCTGACTCATTTCGGAAATTCTATCAACCTTAATGGGTTGGTATCTAACAAAACCTCAGCACGGATTCAGTAAACTTGATTTTCTGATGAATTATGTAACCAGTGACGTAGTCGAGATATTCGTCTTCTAATCAAAGAACAGTTTTACTAAGCACCAGTTCACTGTGTTCTACTATATGGGTGGACCATGGCAATCAACAGTACATGATATTCATAGGTTACTATTAT ] [-] EMBL CD080631 [ AACTAAGAATTGAAGAAACAGAAATATTTGTATACTAAATTAACTTCGCAATGCCGATAAATCACCTGACTCATTTCGGAGATTCTATCAACCTTAATGGGTTGGTATCTAACAAAACCTCAGCACGGATTCAGTAAACTTGATTTTCTGATGAATTATGTAACCAGTGACGTAGTCGAGATATTCGTCTTCTAATCAAAGAACAGTTTTACTAAGCACCAGTTCACTGTGTTCTACTATATGGGTGGACCATGGCAATCAACAGTACATGATATTCATAGGTTACTATTATTCGATCATTAATATCTTCAAAGTATCGCTATGTTTTGGGGATAACGAGTGGTCAAACCTGAGGTGTGGAATAGGATACTAAATGACAATGGCAAAACGGTTGATGAAGTAGTGAACCGTCAACTTCTGGAGTGGTTAAGAAATATTTACTAGAGTTCCAAGCATTAAATCGTGATCAGAGCGAAATTCAGTGTGGTCACGCATTTAAATGATCTTATATTGTTGCGGAAATGTCCATTTAAATTCCTAAATAGTCATTATTTTATATTTGTTTGCACTTATCTGGAAAAGATCTTAGAGGAACTGATGGGATCTATGCCTTCAGAAAGACCCAAATCCCAGTCAATCAGTATGAAGAAGTTATTCTCCTCGTGCCGAATTTTTGGCCCGAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7287#0 ATATACATTTATTTCATAAAAAGCCAAGTTCATTACAAACAGAATGTATTGCAAAAATGT 60 consensus_7287#1 ATAGACATTTATTCCATAAAAAGCCAAGTTCATTACAAACAGAATGTATTGCAAAAATGT 60 *** ********* ********************************************** consensus_7287#0 CCATCACAATATAAAGTACTATTCATTACGATCCCATGTTTAAGGGCGAACTTAGGTAAA 120 consensus_7287#1 CCATCACAATATAAAGTACTATTCATTACGATCCCATGTTTAAGGGCGAACTTAGGTAAA 120 ************************************************************ consensus_7287#0 TCACAGCGTTGGAAATTATGTAAATGAAACTCATATTTGCTTTGCGTATGGATTTCCATT 180 consensus_7287#1 TCACAGCGTTGGAAATTATGTAAATGAG-CTAGTAAAAAAATCA-ATAAAAAAGCATATA 178 *************************** ** ** * ** * ** consensus_7287#0 TCGTAAAACTGACCATTTATTGACGCATATAGATGAGCTAAATGGTAAAGGATTTAGGTT 240 consensus_7287#1 ATACACAATTAAATATCC-TTATAATATTAACAAATACCAATTAAGTAACTTTATATATA 237 * ** * * ** ** ** * * * ** * ** * ** * consensus_7287#0 CAACCTTCTTTTATT--TTTTGTGCCAAAAATACATGGTAAAAAGGAACAGGTTGATTTA 298 consensus_7287#1 TGAAATTCTACCAAAAATATGTTGATAATGACAAATAGCTAAGGGGATGAA----AAATA 293 * **** * * * ** ** * * ** * ** *** * * ** consensus_7287#0 TTGGCATTTGTTTCTTCTTTTGAGATTGCTTTAACGCCTCTCAAAGTTTCAACTTGTGCA 358 consensus_7287#1 TTGTCTTCTATTATATCCAACGAAACTAAACTAAGAATAGAAGAAACAGAAATTTTTGTA 353 *** * * * ** ** ** * * *** ** ** ** ** * consensus_7287#0 AACGAACTCGACCCAAGAATAGGTGCATACAGATGATATGTAGATGTAATTGTATTCGTA 418 consensus_7287#1 TACTAAATTAACTTCGCAAT----GCCGATAAATCACCTG-------ACTCATTTCGGAA 402 ** ** * ** *** ** * * ** * ** * * * * * * consensus_7287#0 ACGTTACGAATCAATTTCGAAGCACACACATTCCAATCGAAAGGATCAACAAGTGTTTCT 478 consensus_7287#1 ATTCTA----TCAACCTTAATGGGTTGGTAT-CTAAC--AAAACCTCAGCACGGATTC-- 453 * ** **** * * * ** * ** *** *** ** * ** consensus_7287#0 AAACGAGAGATGAGTTCTTGAATCATTGATTGAATAAGTTTTGACGAGATATTTATTTGA 538 consensus_7287#1 --AGTAAACTTGATTTTCTGA----TGAATTATGTAACCAGTGACGTAGTCGAGATATTC 507 * * * *** ** *** * *** *** ***** * ** * consensus_7287#0 TTTTTCTGAGCAA-GACTAGCTTCACTAA---CAGATACAGACGAAACTAATAAACGT-T 593 consensus_7287#1 GTCTTCTAATCAAAGAACAGTTTTACTAAGCACCAGTTCACTGTGTTCTACTATATGGGT 567 * **** * *** ** ** ** ***** * * ** *** ** * * * consensus_7287#0 GGA--GGGATTTTAAATCGAACATAATTTGTAAAGCTCGTGATTGCATTGACTTTTGCAA 651 consensus_7287#1 GGACCATGGCAATCAACAGTACATGATATTCATAGGTTACTATTAT-TCGATCATT---- 622 *** * * ** * **** ** * * ** * *** * ** ** consensus_7287#0 AGAATCCGAAAACCATATTGATGCTTCGTCTGTGCAATGAATGGATATATTCTGGTATGA 711 consensus_7287#1 AATATCTTCAAAGTATCGCTATGTTTTGG--GGATAACGAGTGGTCAAAC-CTGAGGTG- 678 * *** *** ** *** ** * * ** ** *** * * *** ** consensus_7287#0 CAGCAATTCGTCAACAATACTGGAGTATATTTCAAATAATGAGGTGCATACTTTAGATAA 771 consensus_7287#1 -TGGAAT------AGGATACTAAATGACAAT---GGCAAAACGGTTGATGAAGTAGTGAA 728 * *** * ***** * * * * ** *** ** *** ** consensus_7287#0 AAGTAGGTGACTAAATGGTGATGGAAGTGATTTATGTACAAGAAATTTTCCCATTGTATA 831 consensus_7287#1 CCGTCAACTTCTGGA--GTGGTTAA---GAAATATTTACTAGAG---TTCCAAGCAT-TA 779 ** ** * *** * * ** *** *** *** **** * * ** consensus_7287#0 GACAATATTTAGAAGTAAATGATGTGTTGGTAGTGAAAGTTGTGAAGGTATACGCACAAC 891 consensus_7287#1 AATCGTGATCAGAGCGAAATTCAGTGT-GGTCACGCA---TTTAAATGATCTTATATTGT 835 * * * *** **** **** *** * * * * ** * * consensus_7287#0 AGCAGACGAATTACCATCAACATCTGTAGATTCAGAAGAATGTATTTCAAGTCGGACTTC 951 consensus_7287#1 TGCGGA--AATGTCCATTTAAATTCCTAAATAGTCATTATTTTATATTTGTTTGCACTTA 893 ** ** *** **** * ** ** ** * * * *** * * * **** consensus_7287#0 TTCAAAAGGTATTATACTGTTCAGTATAGCATCTGTGTTAGCGTATTTCATTAAAAG--A 1009 consensus_7287#1 TCTGGAAAAGATCTTAGAGGAACTGATGGGATCTATGCC-------TTCAGAAAGACCCA 946 * ** ** ** * ** * **** ** **** ** * * consensus_7287#0 AATTCAACTTCATTTTTATTAAAAACTAAGTCCGTCCTCGTA------------------ 1051 consensus_7287#1 AATCCCAGTCAATCAGTATGAAGAAGTTATTC--TCCTCGTGCCGAATTTTTGGCCCGAA 1004 *** * * * ** *** ** ** * * ** ******* consensus_7287#0 - consensus_7287#1 G 1005 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||