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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7287#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1051 fasta sequence
[ATATACATTTATTTCATAAAAAGCCAAGTTCATTACAAACAGAATGTATTGCAAAAATGTCCATCACAATATAAAGTACTATTCATTACGATCCCATGTTTAAGGGCGAACTTAGGTAAATCACAGCGTTGGAAATTATGTAAATGAAACTCATATTTGCTTTGCGTATGGATTTCCATTTCGTAAAACTGACCATTTATTGACGCATATAGATGAGCTAAATGGTAAAGGATTTAGGTTCAACCTTCTTTTATTTTTTGTGCCAAAAATACATGGTAAAAAGGAACAGGTTGATTTATTGGCATTTGTTTCTTCTTTTGAGATTGCTTTAACGCCTCTCAAAGTTTCAACTTGTGCAAACGAACTCGACCCAAGAATAGGTGCATACAGATGATATGTAGATGTAATTGTATTCGTAACGTTACGAATCAATTTCGAAGCACACACATTCCAATCGAAAGGATCAACAAGTGTTTCTAAACGAGAGATGAGTTCTTGAATCATTGATTGAATAAGTTTTGACGAGATATTTATTTGATTTTTCTGAGCAAGACTAGCTTCACTAACAGATACAGACGAAACTAATAAACGTTGGAGGGATTTTAAATCGAACATAATTTGTAAAGCTCGTGATTGCATTGACTTTTGCAAAGAATCCGAAAACCATATTGATGCTTCGTCTGTGCAATGAATGGATATATTCTGGTATGACAGCAATTCGTCAACAATACTGGAGTATATTTCAAATAATGAGGTGCATACTTTAGATAAAAGTAGGTGACTAAATGGTGATGGAAGTGATTTATGTACAAGAAATTTTCCCATTGTATAGACAATATTTAGAAGTAAATGATGTGTTGGTAGTGAAAGTTGTGAAGGTATACGCACAACAGCAGACGAATTACCATCAACATCTGTAGATTCAGAAGAATGTATTTCAAGTCGGACTTCTTCAAAAGGTATTATACTGTTCAGTATAGCATCTGTGTTAGCGTATTTCATTAAAAGAAATTCAACTTCATTTTTATTAAAAACTAAGTCCGTCCTCGTA]
[+] EMBL CD075696 [ATATACATTTATTTCATAAAAAGCCAAGTTCATTACAAACAGAATGTATTGCAAAAATGTCCATCACAATATAAAGTACTATTCATTACGATCCCATGTTTAAGGGCGAACTTAGGTAAATCACAGCGTTGGAAATTATGTAAATGAAACTCATATTTGCTTTGCGTATGGATTTCCATTTCGTAAAACTGACCATTTATTGACGCATATAGATGAGCTAAATGGTAAAGGATTTAGGTTCAACCTTCTTTTATTTTTTGTGCCAAAAATACATGGTAAAAAGGAACAGGTTGATTTATTGGCATTTGTTTCTTCTTTTGAGATTGCTTTAACGCCTCTCAAAGTTTCAACTTGTGCAAACGAACTCGACCCAAGAATAGGTGCATACAGATGATATGTAGATGTAATTGTATTCGTAACGTTACGAATCAATTTCGAAGCACACACATTCCAATCGAAAGGATCAACAAGTGTT ]
[+] EMBL CD142265 [ TGGCAAAAAGGAACAGGGTGATTTATTGTCATTTGTTTCTTCTTTTGAGATTGCTTTAACGCCTCTCAAAGTTTCAACTTGTGCAAACGAACTCGACCCAAGAATAGGTGCATACAGATGATATGTAGATGTAATTGTATTCGTAACGTTACGAATCAATTTCGAAGCACACACATTCCAATCGAAAGGATCAACAAGTGTTTCTAAACGAGAGATGAGTTCTTGAATCATTGATTGAATAAGTTTTGACGAGATATTTATTTGATTTTTCTGAGCAAGACTAGCTTCACTAACAGATACAGACGAAACTAATAAACGTTGGAGGGATTTTAAATCGAACATAATTTGTAAAGCTCGTGATT ]
[-] EMBL CD082081 [ TCGAAGCACACACATTCCAATCGAAAGGATCAACAAGTGTTTCTAAACGAGAGATGAGTTCTTGAATCATTGATTGAATAAGTTTTGACGAGATATTTATTTGATTTTTCTGAGCAAGACTAGCTTCACTAACAGATACAGACGAAACTAATAAACGTTGGAGGAATTTTAAATCGAACATAATTTGTAAAGCTCGTGATTGCATTGACTTTTGCAAAGAATCCGAAAACCATATTGATGCTTCGTCTGTGCAATGAATGGATATATTCTGGTATGACAGCAATTCGTCAACAATACTGGAGTATATTTCAAATAATGAGGTGCATACTTTAGATAAAAGTAGGTGACTAAATGGTGATGGAAGTGATTTATGTACAAGAAATTTTCCCATTGTATAGACAATATTTAGAAGTAAATGATGTGTTGGTAGTGAAAGTTGTGAAGGTATACGCACAACAGCAGACGAATTACCATCAACATCTGTAGATTCAGAAGAATGTATTTCAAGTCGGACTTCTTCAAAAGGTATTATACTGTTCAGTATAGCATCTGTGTTAGCGTATTTCATTAAAAGAAATTCAACTTCATTTTTATTAAAAACTAAGTCCGTCCTCGTA]
consensusID : consensus_7287#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1005 fasta sequence
[ATAGACATTTATTCCATAAAAAGCCAAGTTCATTACAAACAGAATGTATTGCAAAAATGTCCATCACAATATAAAGTACTATTCATTACGATCCCATGTTTAAGGGCGAACTTAGGTAAATCACAGCGTTGGAAATTATGTAAATGAGCTAGTAAAAAAATCAATAAAAAAGCATATAATACACAATTAAATATCCTTATAATATTAACAAATACCAATTAAGTAACTTTATATATATGAAATTCTACCAAAAATATGTTGATAATGACAAATAGCTAAGGGGATGAAAAATATTGTCTTCTATTATATCCAACGAAACTAAACTAAGAATAGAAGAAACAGAAATTTTTGTATACTAAATTAACTTCGCAATGCCGATAAATCACCTGACTCATTTCGGAAATTCTATCAACCTTAATGGGTTGGTATCTAACAAAACCTCAGCACGGATTCAGTAAACTTGATTTTCTGATGAATTATGTAACCAGTGACGTAGTCGAGATATTCGTCTTCTAATCAAAGAACAGTTTTACTAAGCACCAGTTCACTGTGTTCTACTATATGGGTGGACCATGGCAATCAACAGTACATGATATTCATAGGTTACTATTATTCGATCATTAATATCTTCAAAGTATCGCTATGTTTTGGGGATAACGAGTGGTCAAACCTGAGGTGTGGAATAGGATACTAAATGACAATGGCAAAACGGTTGATGAAGTAGTGAACCGTCAACTTCTGGAGTGGTTAAGAAATATTTACTAGAGTTCCAAGCATTAAATCGTGATCAGAGCGAAATTCAGTGTGGTCACGCATTTAAATGATCTTATATTGTTGCGGAAATGTCCATTTAAATTCCTAAATAGTCATTATTTTATATTTGTTTGCACTTATCTGGAAAAGATCTTAGAGGAACTGATGGGATCTATGCCTTCAGAAAGACCCAAATCCCAGTCAATCAGTATGAAGAAGTTATTCTCCTCGTGCCGAATTTTTGGCCCGAAG]
[+] EMBL CD074540 [ATAGACATTTATTCCATAAAAAGCCAAGTTCATTACAAACAGAATGTATTGCAAAAATGTCCATCACAATATAAAGTACTATTCATTACGATCCCATGTTTAAGGGCGAACTTAGGTAAATCACAGCGTTGGAAATTATGTAAATGAGCTAGTAAAAAAATCAATAAAAAAGCATATAATACACAATTAAATATCCTTATAATATTAACAAATACCAATTAAGTAACTTTATATATATGAAATTCTACCAAAAATATGTTGATAATGACAAATAGCTAAGGGGATGAAAAATATTGTCTTCTATTATATCCAACGAAACTAAACTAAGAATAGAAGAAACAGAAATTTTTGTATACTAAATTAACTTCGCAATGCCGATAAATCACCTGACTCATTTCGGAAATTCTATCAACCTTAATGGGTTGGTATCTAACAAAACCTCAGCACGGATTCAGTAAACTTGATTTTCTGATGAATTATGTAACCAGTGACGTAGTCGAGATATTCGTCTTCTAATCAAAGAACAGTTTTACTAAGCACCAGTTCACTGTGTTCTACTATATGGGTGGACCATGGCAATCAACAGTACATGATATTCATAGGTTACTATTAT ]
[-] EMBL CD080631 [ AACTAAGAATTGAAGAAACAGAAATATTTGTATACTAAATTAACTTCGCAATGCCGATAAATCACCTGACTCATTTCGGAGATTCTATCAACCTTAATGGGTTGGTATCTAACAAAACCTCAGCACGGATTCAGTAAACTTGATTTTCTGATGAATTATGTAACCAGTGACGTAGTCGAGATATTCGTCTTCTAATCAAAGAACAGTTTTACTAAGCACCAGTTCACTGTGTTCTACTATATGGGTGGACCATGGCAATCAACAGTACATGATATTCATAGGTTACTATTATTCGATCATTAATATCTTCAAAGTATCGCTATGTTTTGGGGATAACGAGTGGTCAAACCTGAGGTGTGGAATAGGATACTAAATGACAATGGCAAAACGGTTGATGAAGTAGTGAACCGTCAACTTCTGGAGTGGTTAAGAAATATTTACTAGAGTTCCAAGCATTAAATCGTGATCAGAGCGAAATTCAGTGTGGTCACGCATTTAAATGATCTTATATTGTTGCGGAAATGTCCATTTAAATTCCTAAATAGTCATTATTTTATATTTGTTTGCACTTATCTGGAAAAGATCTTAGAGGAACTGATGGGATCTATGCCTTCAGAAAGACCCAAATCCCAGTCAATCAGTATGAAGAAGTTATTCTCCTCGTGCCGAATTTTTGGCCCGAAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7287#0 ATATACATTTATTTCATAAAAAGCCAAGTTCATTACAAACAGAATGTATTGCAAAAATGT 60
consensus_7287#1 ATAGACATTTATTCCATAAAAAGCCAAGTTCATTACAAACAGAATGTATTGCAAAAATGT 60
*** ********* **********************************************
consensus_7287#0 CCATCACAATATAAAGTACTATTCATTACGATCCCATGTTTAAGGGCGAACTTAGGTAAA 120
consensus_7287#1 CCATCACAATATAAAGTACTATTCATTACGATCCCATGTTTAAGGGCGAACTTAGGTAAA 120
************************************************************
consensus_7287#0 TCACAGCGTTGGAAATTATGTAAATGAAACTCATATTTGCTTTGCGTATGGATTTCCATT 180
consensus_7287#1 TCACAGCGTTGGAAATTATGTAAATGAG-CTAGTAAAAAAATCA-ATAAAAAAGCATATA 178
*************************** ** ** * ** * **
consensus_7287#0 TCGTAAAACTGACCATTTATTGACGCATATAGATGAGCTAAATGGTAAAGGATTTAGGTT 240
consensus_7287#1 ATACACAATTAAATATCC-TTATAATATTAACAAATACCAATTAAGTAACTTTATATATA 237
* ** * * ** ** ** * * * ** * ** * ** *
consensus_7287#0 CAACCTTCTTTTATT--TTTTGTGCCAAAAATACATGGTAAAAAGGAACAGGTTGATTTA 298
consensus_7287#1 TGAAATTCTACCAAAAATATGTTGATAATGACAAATAGCTAAGGGGATGAA----AAATA 293
* **** * * * ** ** * * ** * ** *** * * **
consensus_7287#0 TTGGCATTTGTTTCTTCTTTTGAGATTGCTTTAACGCCTCTCAAAGTTTCAACTTGTGCA 358
consensus_7287#1 TTGTCTTCTATTATATCCAACGAAACTAAACTAAGAATAGAAGAAACAGAAATTTTTGTA 353
*** * * * ** ** ** * * *** ** ** ** ** *
consensus_7287#0 AACGAACTCGACCCAAGAATAGGTGCATACAGATGATATGTAGATGTAATTGTATTCGTA 418
consensus_7287#1 TACTAAATTAACTTCGCAAT----GCCGATAAATCACCTG-------ACTCATTTCGGAA 402
** ** * ** *** ** * * ** * ** * * * * * *
consensus_7287#0 ACGTTACGAATCAATTTCGAAGCACACACATTCCAATCGAAAGGATCAACAAGTGTTTCT 478
consensus_7287#1 ATTCTA----TCAACCTTAATGGGTTGGTAT-CTAAC--AAAACCTCAGCACGGATTC-- 453
* ** **** * * * ** * ** *** *** ** * **
consensus_7287#0 AAACGAGAGATGAGTTCTTGAATCATTGATTGAATAAGTTTTGACGAGATATTTATTTGA 538
consensus_7287#1 --AGTAAACTTGATTTTCTGA----TGAATTATGTAACCAGTGACGTAGTCGAGATATTC 507
* * * *** ** *** * *** *** ***** * ** *
consensus_7287#0 TTTTTCTGAGCAA-GACTAGCTTCACTAA---CAGATACAGACGAAACTAATAAACGT-T 593
consensus_7287#1 GTCTTCTAATCAAAGAACAGTTTTACTAAGCACCAGTTCACTGTGTTCTACTATATGGGT 567
* **** * *** ** ** ** ***** * * ** *** ** * * *
consensus_7287#0 GGA--GGGATTTTAAATCGAACATAATTTGTAAAGCTCGTGATTGCATTGACTTTTGCAA 651
consensus_7287#1 GGACCATGGCAATCAACAGTACATGATATTCATAGGTTACTATTAT-TCGATCATT---- 622
*** * * ** * **** ** * * ** * *** * ** **
consensus_7287#0 AGAATCCGAAAACCATATTGATGCTTCGTCTGTGCAATGAATGGATATATTCTGGTATGA 711
consensus_7287#1 AATATCTTCAAAGTATCGCTATGTTTTGG--GGATAACGAGTGGTCAAAC-CTGAGGTG- 678
* *** *** ** *** ** * * ** ** *** * * *** **
consensus_7287#0 CAGCAATTCGTCAACAATACTGGAGTATATTTCAAATAATGAGGTGCATACTTTAGATAA 771
consensus_7287#1 -TGGAAT------AGGATACTAAATGACAAT---GGCAAAACGGTTGATGAAGTAGTGAA 728
* *** * ***** * * * * ** *** ** *** **
consensus_7287#0 AAGTAGGTGACTAAATGGTGATGGAAGTGATTTATGTACAAGAAATTTTCCCATTGTATA 831
consensus_7287#1 CCGTCAACTTCTGGA--GTGGTTAA---GAAATATTTACTAGAG---TTCCAAGCAT-TA 779
** ** * *** * * ** *** *** *** **** * * **
consensus_7287#0 GACAATATTTAGAAGTAAATGATGTGTTGGTAGTGAAAGTTGTGAAGGTATACGCACAAC 891
consensus_7287#1 AATCGTGATCAGAGCGAAATTCAGTGT-GGTCACGCA---TTTAAATGATCTTATATTGT 835
* * * *** **** **** *** * * * * ** * *
consensus_7287#0 AGCAGACGAATTACCATCAACATCTGTAGATTCAGAAGAATGTATTTCAAGTCGGACTTC 951
consensus_7287#1 TGCGGA--AATGTCCATTTAAATTCCTAAATAGTCATTATTTTATATTTGTTTGCACTTA 893
** ** *** **** * ** ** ** * * * *** * * * ****
consensus_7287#0 TTCAAAAGGTATTATACTGTTCAGTATAGCATCTGTGTTAGCGTATTTCATTAAAAG--A 1009
consensus_7287#1 TCTGGAAAAGATCTTAGAGGAACTGATGGGATCTATGCC-------TTCAGAAAGACCCA 946
* ** ** ** * ** * **** ** **** ** * *
consensus_7287#0 AATTCAACTTCATTTTTATTAAAAACTAAGTCCGTCCTCGTA------------------ 1051
consensus_7287#1 AATCCCAGTCAATCAGTATGAAGAAGTTATTC--TCCTCGTGCCGAATTTTTGGCCCGAA 1004
*** * * * ** *** ** ** * * ** *******
consensus_7287#0 -
consensus_7287#1 G 1005
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||