cluster # 7289

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Schistosoma mansoni
cluster # 7289 cluster # 7289 Sequences # 5 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7289#0 length = 444 sequences # 1
consensus_7289#1 length = 419 sequences # 2

consensus_7289#2 length = 409 sequences # 1
consensus_7289#3 length = 369 sequences # 1

consensusID : consensus_7289#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 444
fasta sequence

                              [AATGCTGGTCGGCGGCCTATGCTCCATTGGGAGTAACAGGCGTTAGTAAGTAAGAGGCTGCAGAAGACGGAACATTGTACAACTTTGCGCACTACGCAGATACACTTTTTAGTAATGATTGTCGTGAGTGGATAAGTATTTTGGCTCAAACACCTTGTATTATGCGGACAATTGCAAATGAATTTCAGAAGATCCTACAAGCCCTCACATGGGATCCTGAAGGCCAAAGGAGAAGAGGAAGACCAAAGAACACATTACGCTGAGAAATTGAGACAGACATGAGAAGAATGAACAAAAATAGGGTAGAACTAGAAAGGAAGACCCAGGACAGAGTGGGTTGGAGAATGCTGGTCGGCGGCCTATGCTCCATTGGGAGTAACAGGCGTTAGTAAGTAAGAGGCTGCAGAAGACGGAACATTGTACAACTNTGCGCACTACGCACAT]

[+] EMBL CD195295             [AATGCTGGTCGGCGGCCTATGCTCCATTGGGAGTAACAGGCGTTAGTAAGTAAGAGGCTGCAGAAGACGGAACATTGTACAACTTTGCGCACTACGCAGATACACTTTTTAGTAATGATTGTCGTGAGTGGATAAGTATTTTGGCTCAAACACCTTGTATTATGCGGACAATTGCAAATGAATTTCAGAAGATCCTACAAGCCCTCACATGGGATCCTGAAGGCCAAAGGAGAAGAGGAAGACCAAAGAACACATTACGCTGAGAAATTGAGACAGACATGAGAAGAATGAACAAAAATAGGGTAGAACTAGAAAGGAAGACCCAGGACAGAGTGGGTTGGAGAATGCTGGTCGGCGGCCTATGCTCCATTGGGAGTAACAGGCGTTAGTAAGTAAGAGGCTGCAGAAGACGGAACATTGTACAACTNTGCGCACTACGCACAT]




>consensus_7289#0
AATGCTGGTCGGCGGCCTATGCTCCATTGGGAGTAACAGGCGTTAGTAAGTAAGAGGCTG
CAGAAGACGGAACATTGTACAACTTTGCGCACTACGCAGATACACTTTTTAGTAATGATT
GTCGTGAGTGGATAAGTATTTTGGCTCAAACACCTTGTATTATGCGGACAATTGCAAATG
AATTTCAGAAGATCCTACAAGCCCTCACATGGGATCCTGAAGGCCAAAGGAGAAGAGGAA
GACCAAAGAACACATTACGCTGAGAAATTGAGACAGACATGAGAAGAATGAACAAAAATA
GGGTAGAACTAGAAAGGAAGACCCAGGACAGAGTGGGTTGGAGAATGCTGGTCGGCGGCC
TATGCTCCATTGGGAGTAACAGGCGTTAGTAAGTAAGAGGCTGCAGAAGACGGAACATTG
TACAACTNTGCGCACTACGCACAT

consensusID : consensus_7289#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 419
fasta sequence

                              [GACCACCACGTGAAGGTAGCAGCAACGATCGGGGGTTAGAAGTGCTACATGGCACTCGTCAGCAAGGTGTACCTGTAATATTTTGGAAACTGGTGCTCCCTGACGGATTCGATCCCGTGTCACTTATCTTCACAGTCAGAGACGTTACCACTGAGCTATTCGAGTCGTGACCGACCTCCTGTAGGACTGAGATGTAATCACAATTGATTGATCACTGGGTGGTGATCAATGCCATGCGCGGCAAGCGTTCGGTTCTTAGAAAAGCGACAGCCGCGGTAACCCGACCGCATTATAAGACAAGCCCTCACAAGGGATTCCTGGAAGGSCCAAAGGTGGAAGAGGGATTACCCAAGGACAAATAACGSCAAGGAATTAGAGACAGTTATGCGAAGAATGAACAAAAATTGGATAGAACTAGG]

[+] EMBL CD127341             [GACCACCACGTGAAGGTAGCAGCAACGATCGGGGGTTAGAAGTGCTACATGGCACTCGTCAGCAAGGTGTACCTGTAATATTTTGGAAACTGGTGCTCCCTGACGGATTCGATCCCGTGTCACTTATCTTCACAGTCAGAGACGTTACCACTGAGCTATTCGAGTCGTGACCGACCTCCTGTAGGACTGAGATGTAATCACAATTGATTGATCACTGGGTGGTGATCAATGCCATGCGCGGCAAG                                                                                                                                                                              ]
[+] EMBL BE519400             [                                                                                                                                                                                        GACTGAGATGTAATCACAATTGATTGATCACTGGGTGGTGATCAATGTCATGCGTGTCAAGCGTTCGGTTCTTAGAAAAGCGACAGCCGCGGTAACCCGACCGCATTATAAGACAAGCCCTCACAAGGGATTCCTGGAAGGSCCAAAGGTGGAAGAGGGATTACCCAAGGACAAATAACGSCAAGGAATTAGAGACAGTTATGCGAAGAATGAACAAAAATTGGATAGAACTAGG]




>consensus_7289#1
GACCACCACGTGAAGGTAGCAGCAACGATCGGGGGTTAGAAGTGCTACATGGCACTCGTC
AGCAAGGTGTACCTGTAATATTTTGGAAACTGGTGCTCCCTGACGGATTCGATCCCGTGT
CACTTATCTTCACAGTCAGAGACGTTACCACTGAGCTATTCGAGTCGTGACCGACCTCCT
GTAGGACTGAGATGTAATCACAATTGATTGATCACTGGGTGGTGATCAATGCCATGCGCG
GCAAGCGTTCGGTTCTTAGAAAAGCGACAGCCGCGGTAACCCGACCGCATTATAAGACAA
GCCCTCACAAGGGATTCCTGGAAGGSCCAAAGGTGGAAGAGGGATTACCCAAGGACAAAT
AACGSCAAGGAATTAGAGACAGTTATGCGAAGAATGAACAAAAATTGGATAGAACTAGG

consensusID : consensus_7289#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 409
fasta sequence

                              [AGAAAGGAAGACCCAGGACAGAGTGGGTTGGAGAATGCTGGTCGGCGGCCTATGCTCCATTGGGAGTAACAGGCGTTAGTAAGTAAGTAAGAGGCTGCAGAAGACGGAACATTGTACAACTTTGCGCACTACGCAGATACATTTTTTAGTAATGATTGTCGTGAGTGGATAAGTATTTTGGCTCAAACACCTTGTATTATGCGGACAATTGCAAATGAATTTCAGAAGATCCTACAAGTCACTCTTAGCAATGCATCTAGTCGTCGTCAAGCTGAGATAAAATTACGTTTTTCTGATCCACATTCATGTCAATTATGTACCCCAAGTTTTGGTTATGATCCAGTTGGTCTGACATCTTCTGGGCCATCTTCGGGTTCATGTTGTGTTCTAACTCATCACTCTGACAGTC]

[+] EMBL CD181117             [AGAAAGGAAGACCCAGGACAGAGTGGGTTGGAGAATGCTGGTCGGCGGCCTATGCTCCATTGGGAGTAACAGGCGTTAGTAAGTAAGTAAGAGGCTGCAGAAGACGGAACATTGTACAACTTTGCGCACTACGCAGATACATTTTTTAGTAATGATTGTCGTGAGTGGATAAGTATTTTGGCTCAAACACCTTGTATTATGCGGACAATTGCAAATGAATTTCAGAAGATCCTACAAGTCACTCTTAGCAATGCATCTAGTCGTCGTCAAGCTGAGATAAAATTACGTTTTTCTGATCCACATTCATGTCAATTATGTACCCCAAGTTTTGGTTATGATCCAGTTGGTCTGACATCTTCTGGGCCATCTTCGGGTTCATGTTGTGTTCTAACTCATCACTCTGACAGTC]




>consensus_7289#2
AGAAAGGAAGACCCAGGACAGAGTGGGTTGGAGAATGCTGGTCGGCGGCCTATGCTCCAT
TGGGAGTAACAGGCGTTAGTAAGTAAGTAAGAGGCTGCAGAAGACGGAACATTGTACAAC
TTTGCGCACTACGCAGATACATTTTTTAGTAATGATTGTCGTGAGTGGATAAGTATTTTG
GCTCAAACACCTTGTATTATGCGGACAATTGCAAATGAATTTCAGAAGATCCTACAAGTC
ACTCTTAGCAATGCATCTAGTCGTCGTCAAGCTGAGATAAAATTACGTTTTTCTGATCCA
CATTCATGTCAATTATGTACCCCAAGTTTTGGTTATGATCCAGTTGGTCTGACATCTTCT
GGGCCATCTTCGGGTTCATGTTGTGTTCTAACTCATCACTCTGACAGTC

consensusID : consensus_7289#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 369
fasta sequence

                              [TAGAAATTTATTAAAAAGTAAAAAAAAACTAGCAAAAAATACATGATCACAGAAGTAAAAGTGAAAGGAACTCTCTCTTTAAAATTATTACTAGTTAGTTGTATATATGAATAATTTTTTTCTGGTTAGCGTTTTTTTTAGCGAGTTGGTTTTCTACGGGATGGGGTCGCTAACCAGATGTACAACCCTCTTCCTTTACCCAGGCTTGGGACCGGAAGTAGCCCCCAGAGGAGCTACAGGCGGAATGAATGAACAAAAACTGGATAGAAGTAAAAAAGAAGGCCCAGGACAGAGTGGGTTGGACAATGCTGGTCGGCGGCTAATGCTCCATTGGGAGTAACAGGCGTAAGTAAGTAAAGTAATCCACTT]

[+] EMBL CD078797             [TAGAAATTTATTAAAAAGTAAAAAAAAACTAGCAAAAAATACATGATCACAGAAGTAAAAGTGAAAGGAACTCTCTCTTTAAAATTATTACTAGTTAGTTGTATATATGAATAATTTTTTTCTGGTTAGCGTTTTTTTTAGCGAGTTGGTTTTCTACGGGATGGGGTCGCTAACCAGATGTACAACCCTCTTCCTTTACCCAGGCTTGGGACCGGAAGTAGCCCCCAGAGGAGCTACAGGCGGAATGAATGAACAAAAACTGGATAGAAGTAAAAAAGAAGGCCCAGGACAGAGTGGGTTGGACAATGCTGGTCGGCGGCTAATGCTCCATTGGGAGTAACAGGCGTAAGTAAGTAAAGTAATCCACTT]




>consensus_7289#3
TAGAAATTTATTAAAAAGTAAAAAAAAACTAGCAAAAAATACATGATCACAGAAGTAAAA
GTGAAAGGAACTCTCTCTTTAAAATTATTACTAGTTAGTTGTATATATGAATAATTTTTT
TCTGGTTAGCGTTTTTTTTAGCGAGTTGGTTTTCTACGGGATGGGGTCGCTAACCAGATG
TACAACCCTCTTCCTTTACCCAGGCTTGGGACCGGAAGTAGCCCCCAGAGGAGCTACAGG
CGGAATGAATGAACAAAAACTGGATAGAAGTAAAAAAGAAGGCCCAGGACAGAGTGGGTT
GGACAATGCTGGTCGGCGGCTAATGCTCCATTGGGAGTAACAGGCGTAAGTAAGTAAAGT
AATCCACTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7289#0      ---------------------------------AATGCTGGTCGGCGGCCTATGCTCC-A 26
consensus_7289#2      AGAAAGGAAGACCCAGGACAGAGTGGGTTGGAGAATGCTGGTCGGCGGCCTATGCTCC-A 59
consensus_7289#3      ------------------------------------------------------------
consensus_7289#1      --------------------------------GACCACCACGTGAAGGTAGCAGCAACGA 28
                                                                                  

consensus_7289#0      TTGGGAGTAACAGGCGTTAGTAAGTAAG----AGGCTGCAGAAGACGGAACATTGTACAA 82
consensus_7289#2      TTGGGAGTAACAGGCGTTAGTAAGTAAGTAAGAGGCTGCAGAAGACGGAACATTGTACAA 119
consensus_7289#3      ------TAGAAATTTATTAAAAAGTAAAAAAAAACTAGCAAAAAATACATGATCACAGAA 54
consensus_7289#1      TCGGGGGTTAGAAGTGCTACATGGCACTCGTCAGCAAGGTGTACCTGTAATATTTTGGAA 88
                               * *     **    * *      *    *    *     *  **     **

consensus_7289#0      CTTTGCGCACTACG-CAGATACACTTTTTAGTAATGATT-GTCG--TGAGTGGATAAGTA 138
consensus_7289#2      CTTTGCGCACTACG-CAGATACATTTTTTAGTAATGATT-GTCG--TGAGTGGATAAGTA 175
consensus_7289#3      GTAAAAGTGAAAGG-AACTCTCTCTTTAAAATTATTACTAGTTAGTTGTATATATGAATA 113
consensus_7289#1      ACTGGTGCTCCCTGACGGATTCGATCCCGTGTCACTTATCTTCA------CAGTCAGAGA 142
                            *      *       *  *      * *    *  *                 *

consensus_7289#0      TTTTGGCTCAAACACCTTGTATTATGCGGACAATTGCAAATGAATTTCAGAAGATCCTAC 198
consensus_7289#2      TTTTGGCTCAAACACCTTGTATTATGCGGACAATTGCAAATGAATTTCAGAAGATCCTAC 235
consensus_7289#3      ATTTTTTTCTGGT-TAGCGTTTTTTTTAGCGAGTTG-----GTTTTCTACGGGATGGGGT 167
consensus_7289#1      CGTTACCAC--------TGAGCTATTCG---AGTCGTGACCGACCTCCTGTAGGACTGAG 191
                        **    *         *   * *      * * *     *   *      *       

consensus_7289#0      AAGCCCTCACATGGGATCCTGAAGGCCAAAGGAGAAGAGGAAGACCAAAGAACACATTAC 258
consensus_7289#2      AAGTCACTCTTAGCAATGCATCTAGTCGTCGTCAAGCTG--AGATAAAATTACGTTTTTC 293
consensus_7289#3      CGCTAACCAGATGTACAACCCTCTTCCTTTACCCAGGCTTGGGACCGGAAGTAGCCCC-- 225
consensus_7289#1      ATGTAATCACAATTGATTGATCACTGGGTGGTGATCAATGCCATGCGCGGCAAGCGTTCG 251
                                                                                  

consensus_7289#0      -GCTGAGAAATTGAGACAGACATGAGAAGAATGAACAAAAATAGGGTAGAAC-TAGAAAG 316
consensus_7289#2      TGATCCACATTCATGTCAATTATGTACCCCAAGTTTTGGT-TATGATCCAGT-TGGTCTG 351
consensus_7289#3      -------CAGAGGAGCTACAGGCGGAATGAATGAACAAAAACTGGATAGAAG-TAAAAAA 277
consensus_7289#1      GTTCTTAGAAAAGCGACAGCCGCGGTAACCCGACCGCATTATAAGACAAGCCCTCACAAG 311
                              *     *  *     *                    *        *      

consensus_7289#0      GAAGACCCAGGACAGAGTGGGTTGGAGAATG--CTGGTCGGCGGCCTATGCTCCATTGGG 374
consensus_7289#2      ACATCTTCTGGGCCATCTTCG--GGTTCATG--TTGTGTTCTAACTCAT--CACTCTGAC 405
consensus_7289#3      GAAGGCCCAGGACAGAGTGGGTTGGACAATG--CTGGTCGGCGGCTAATGCTCCATTGGG 335
consensus_7289#1      GGATTCCTGGAAGGSCCAAAGGTGGAAGAGGGATTACCCAAGGACAAATAACGSCAAGGA 371
                        *      *          *  **   * *   *         *  **        *  

consensus_7289#0      AGTAACAGGCGTTAGTAAGTAAGAGGCTGCAGAAGACGGAACATTGTACAACTNTGCGCA 434
consensus_7289#2      AGTC-------------------------------------------------------- 409
consensus_7289#3      AGTAACAGGCGTAAGTAAGTAAAGTAATCCACTT-------------------------- 369
consensus_7289#1      ATTAGAGACAGTTATGCGAAGAATGAACAAAAATTGGATAGAACTAGG------------ 419
                      * *                                                         

consensus_7289#0      CTACGCACAT 444
consensus_7289#2      ----------
consensus_7289#3      ----------
consensus_7289#1      ----------