cluster # 7290

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Schistosoma mansoni
cluster # 7290 cluster # 7290 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7290#0 length = 436 sequences # 2

consensus_7290#1 length = 347 sequences # 3

consensusID : consensus_7290#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 436
fasta sequence

                              [TGTAGACAATAATTTCAATAAGTCAGCGATCGTACCATACAAAAAATAAAAACACACAAGAAGAATATTAGCAAAATATTTATCTTTGTCAACATGCTTGTATATGTAATCCATCTCCATTGGGTCAATGGGAAAGCGTATTTAAAGCAGAAATTTAATGCATGGCGCAGGCGTTACCAGAAAGAAATAGGCAGAAGTCGAAACTCATAGTTGAGGGCTAAGAAAGACAATACAGGATGCAATAAATGAGAAAAATCGAATACAAGTGACTCCGTACACGTTTCAGTTATGATAGATTTTCCTACGGAATGAGTTTTATTTAGAATAAATTAGGAACCAGATTCACATAAACATGATTAACATATACTAAATTTCATGAACATACATCTATAAATTGAAAACTGAGATTATAAGCGTTAAAATGGTCAGATTCTAC]

[+] EMBL CD198442             [TGTAGACAATAATTTCAATAAGTCAGCGATCGTACCATACAAAAAATAAAAACACACAAGAAGAATATTAGCAAAATATTTATCTTTGTCAACATGCTTGTATATGTAATCCATCTCCATTGGGTCAATGGGAAAGCGTATTTAAAGCAGAAATTTAATGCATGGCGCAGGCGTTACCAGAAAGAAATAGGCAGAAGTCGAAACTCATAGTTGAGGGCTAAGAAAGACAATACAGGATGCAATAAATGAGAAAAATCGAATACAAGTGACTCCGTACACGTTTCAGTTATGATAGATTTTCCTACGGAATGAGTTTTATTTAGAATAAATTAGGAACCAGATTCACATAAACATGATTAACATATACTAAATTTCATGAACATACATCTATAAATTGAAAACTGAGATTATAAGCGTTAAAATGGTCAGATTCTAC]
[-] EMBL CD193739             [                                                                                                                                                                                                                       GGCTAAGAAAGACAATACAGGATGCAATAAATGAGAAAAATCGAATACAAGTGACTCCGTACACGTTTCAGTTATGATAGATTTTCCTACGGAATGAGTTTTATTTAGAATAAATTAGGAACCAGATTCACATAAACATGATTAACATATACTAAATTTCATGA                                                         ]




>consensus_7290#0
TGTAGACAATAATTTCAATAAGTCAGCGATCGTACCATACAAAAAATAAAAACACACAAG
AAGAATATTAGCAAAATATTTATCTTTGTCAACATGCTTGTATATGTAATCCATCTCCAT
TGGGTCAATGGGAAAGCGTATTTAAAGCAGAAATTTAATGCATGGCGCAGGCGTTACCAG
AAAGAAATAGGCAGAAGTCGAAACTCATAGTTGAGGGCTAAGAAAGACAATACAGGATGC
AATAAATGAGAAAAATCGAATACAAGTGACTCCGTACACGTTTCAGTTATGATAGATTTT
CCTACGGAATGAGTTTTATTTAGAATAAATTAGGAACCAGATTCACATAAACATGATTAA
CATATACTAAATTTCATGAACATACATCTATAAATTGAAAACTGAGATTATAAGCGTTAA
AATGGTCAGATTCTAC

consensusID : consensus_7290#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 347
fasta sequence

                              [TTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAATATTAGCAAAATATTTATCTTTGTCTACATGCTTGTATATGTAATCCATCTCCATTGGGTCAATGGGAAAGCGTATTTAAAGCAGAAATTTAATGCATGGCGCAGGCGTTACCAGAAAGAAATAGGCAGAAGTCGAAACTCATAGTTGAGGGCTAAGAAAGACAATACAGGATGCAATAAATGAGAAAAATCGAATACAAGTGACTCCGTACACGTTTCAGTTATGATAGATTTTCCTACGGAATGAGTTTATTTAGAATAAATTAGGAACCAGATTCACATAAACATGGTTAACATATACTAAT]

[+] EMBL AI395215             [TTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAATATTAGCAAAATATTTATCTTTGTCTACATGCTTGTATATGTAATCCATCTCCATTGGGTCAATGGGAAAGCGTATTTAAAGCAGAAATTTAATGCATGGCGCAGGCGTTACCAGAAAGAAATAGGCAGAAGTCGAAACTCATAGTTGAGGGCTAAGAAAGACAATACAGGATGCAATAAATGAGAAAAATCGAATACAAGTGACTCCGTACACGTTTCAGTTATGATAGATTTTCCTACGGAATGAGTTTATTTAGAATAAATTAGGAACCAGATTCACATAAACATGGTTAACATATACTAAT]
[-] EMBL SMAA33967            [                         TTTTTTTTTTTTTTGAATATTAGCAAAATATTTATCTTTGTCTACATGCTTGTATATGTAATCCATCTCCATT GGTCAATGGGAAAGCGTATTTAAAGCAGAAATTTAATGCATGGCGCAGGCGTTACCAGAAAGAAATAGGCAGAAGTCGAAACTCATAGTTGAGGGCTAAGAAAGACAATACAGGATGCAATAAATGAGAAAAATCGAATACAAGTGACTCCGT                                                                                               ]
[+] EMBL SM149                [                                                     TATTTATCTTTGTCTACATGCTTGTATATGTAATCCATCTCCATTGGGTCAATGGGAAAGCGTATTTAANGCAGAAATTTAATGCATGGCGCAGGCGTTACCAGAAAGAAATAGGCAGAAGTCGAAACTCATAGTTGAGGGCTAAGAAAGACAATACAGGATGCAATAAATGAGAAAANTCGAATACAAGTGACTCCGTACACGTTTCAGTTATGATAGATTTTCCTACGGAATGAGTTT                                                      ]




>consensus_7290#1
TTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAATATTAGCAAAATATTTAT
CTTTGTCTACATGCTTGTATATGTAATCCATCTCCATTGGGTCAATGGGAAAGCGTATTT
AAAGCAGAAATTTAATGCATGGCGCAGGCGTTACCAGAAAGAAATAGGCAGAAGTCGAAA
CTCATAGTTGAGGGCTAAGAAAGACAATACAGGATGCAATAAATGAGAAAAATCGAATAC
AAGTGACTCCGTACACGTTTCAGTTATGATAGATTTTCCTACGGAATGAGTTTATTTAGA
ATAAATTAGGAACCAGATTCACATAAACATGGTTAACATATACTAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7290#0      TGTAGACAATAATTTCAATAAGTCAGCGATCGTACCATACAAAAAATAAAAACACACAAG 60
consensus_7290#1      ---------------------TTTATTTTTTTTTTTTTTTTTTTTTTTTT--TTTTTTTT 37
                                            * *    *  *    *        *             

consensus_7290#0      AAGAATATTAGCAAAATATTTATCTTTGTCAACATGCTTGTATATGTAATCCATCTCCAT 120
consensus_7290#1      TTGAATATTAGCAAAATATTTATCTTTGTCTACATGCTTGTATATGTAATCCATCTCCAT 97
                        **************************** *****************************

consensus_7290#0      TGGGTCAATGGGAAAGCGTATTTAAAGCAGAAATTTAATGCATGGCGCAGGCGTTACCAG 180
consensus_7290#1      TGGGTCAATGGGAAAGCGTATTTAAAGCAGAAATTTAATGCATGGCGCAGGCGTTACCAG 157
                      ************************************************************

consensus_7290#0      AAAGAAATAGGCAGAAGTCGAAACTCATAGTTGAGGGCTAAGAAAGACAATACAGGATGC 240
consensus_7290#1      AAAGAAATAGGCAGAAGTCGAAACTCATAGTTGAGGGCTAAGAAAGACAATACAGGATGC 217
                      ************************************************************

consensus_7290#0      AATAAATGAGAAAAATCGAATACAAGTGACTCCGTACACGTTTCAGTTATGATAGATTTT 300
consensus_7290#1      AATAAATGAGAAAAATCGAATACAAGTGACTCCGTACACGTTTCAGTTATGATAGATTTT 277
                      ************************************************************

consensus_7290#0      CCTACGGAATGAGTTTTATTTAGAATAAATTAGGAACCAGATTCACATAAACATGATTAA 360
consensus_7290#1      CCTACGGAATGAGTTT-ATTTAGAATAAATTAGGAACCAGATTCACATAAACATGGTTAA 336
                      **************** ************************************** ****

consensus_7290#0      CATATACTAAATTTCATGAACATACATCTATAAATTGAAAACTGAGATTATAAGCGTTAA 420
consensus_7290#1      CATATACTAAT------------------------------------------------- 347
                      **********                                                  

consensus_7290#0      AATGGTCAGATTCTAC 436
consensus_7290#1      ----------------