cluster # 7292

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Schistosoma mansoni
cluster # 7292 cluster # 7292 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7292#0 length = 799 sequences # 3

consensus_7292#1 length = 535 sequences # 2

consensusID : consensus_7292#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 799
fasta sequence

                              [GTGGTTGTTCAATGGTATTTGAACATCCTCGTGCCGTAAATGTTATTGCTCTATGCCTCCTTCATCCAAGCTACCAGACAAAAACTTTAGTACTTGAACTTTTAACGGTTGTTTGCCTAATCACCGGTGGACATGAACGTGTATTAAATGCATTTGATAATTTTAAAAAGGAAGTTGGGGAATCTACACGTTTTGAATATTTAATACATTATTTTTTCACACATGAATCTGAATCTTCAGATTATAATATGGATTTTATGGTATCTTGTATGCAGTTTTTCAATATAGTTGTACATTCAACAGATGACATAATGTTAAGAGTGTATTTACAAGAAGAATCTAAACATCTTGGATTAGTTAATTATTTATCGCGAATATACAATCAATCCGGTGATCGTCTTCT-ACGTCAAATAGAAGCATATAATGATAATGAAGTAGATGTTGCAGTATTATTAGAAGATTCACAAATGCGTGATATATTACAACAAGAGAAAGAACAAGCAGAATCAGATCTGATCATTTTACAAACTCGTACAGCAACAATTCAAGCAGAATATGAAAATAAATTATTACAGCTTCAACAAAACATACAAGCTTTGGAAATAAAANATCAAGATTTGGAGGTAAACATTATATATATATGTATACATAGCGTATTCATTGAACACTGTTTCTAAATAATGAGAATATTGAAATATTATTCAGTACTTATCGTATTTTCTACCATATTGATGGTTACAAGTGATCTTTAGATGTTCTGAAAATTTAAGAATATATTACCAGGGTATGCACTTTTCAT]

[+] EMBL CD195821             [GTGGTTGTTCAATGGTATTTGAACATCCTCGTGCCGTAAATGTTATTGCTCTATGCCTCCTTCATCCAAGCTACCAGACAAAAACTTTAGTACTTGAACTTTTAACGGTTGTTTGCCTAATCACCGGTGGACATGAACGTGTATTAAATGCATTTGATAATTTTAAAAAGGAAGTTGGGGAATCTACACGTTTTGAATATTTAATACATTATTTTTTCACACATGAATCTGAATCTTCAGATT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CD164052             [                                                                                                                               TGGACATGAACGTGTATTAAATGCATTTGATAATTTTAAAAAGGAAGTTGGGGAATCTACACGTTTTGAATATTTAATACATTATTTTTTCACACATGAATCTGAATCTTCAGATTATAATATGGATTTTATGGTATCTTGTATGCAGTTTTTCAATATAGTTGTACATTCAACAGATGACATAATGTTAAGAGTGTATTTACAAGAAGAATCTAAACATCTTGGATTAGTTAATTATTTATCGCGAATATACAATCAATCCGGTGATCGTCTTCT ACGTCAAATAGAAGCATATAATGATAATGAAGTAGATGTTGCAGTATTATTAGAAGATTCACAAATGCGTGATATATTACAACAAGAGAAAGAACAAGCAGAATCAGATCTGATCATTTTACAAACTCGTACAGCAACAATTCAAGCAGAATATGAAAATAAATTATTACAGCTTCAACAAAACATACAAGCTTTGGAAATAAAANATCAAGATTTGGAGGTAAACATTATATATATATGTATACATAGCGTATTCATTGAACACTGTTTCTAAATAATGAGAATATTGAAATATTATTCAGTACTTATCGTATTTT                                                                               ]
[-] EMBL CD157354             [                                                                                                                                                                                                                                                                                                                                                                                               CAATCCGGTGATCTTCTTTTAACGTCAAATAGAAGCATATAATGATAATGAAGTAGATGTTGCAGTATTATTAGAAGATTCACAAATGCGTGATATATTACAACAAGAGAAAGAACAAGCAGAATCAGATCTGATCGTTTTACAAACTCGTACAGCAACAATTCAAGCAGAATATGAAAATAAATTATTACAGCTTCAACAAAACATACAAGCTTTGGAAATAAAAAATCAAGATTTGGAGGTAAACATTATATATATATGTATACATAGCGTATTCATTGAACACTGTTTCTAAATAGTGTGAATATTGAAATATTATTCAGTACTTATCGTATTTTCTACCATATTGATGGTTACAAGTGATCTTTAGATGTTCTGAAAATTTAAGAATATATTACCAGGGTATGCACTTTTCAT]




>consensus_7292#0
GTGGTTGTTCAATGGTATTTGAACATCCTCGTGCCGTAAATGTTATTGCTCTATGCCTCC
TTCATCCAAGCTACCAGACAAAAACTTTAGTACTTGAACTTTTAACGGTTGTTTGCCTAA
TCACCGGTGGACATGAACGTGTATTAAATGCATTTGATAATTTTAAAAAGGAAGTTGGGG
AATCTACACGTTTTGAATATTTAATACATTATTTTTTCACACATGAATCTGAATCTTCAG
ATTATAATATGGATTTTATGGTATCTTGTATGCAGTTTTTCAATATAGTTGTACATTCAA
CAGATGACATAATGTTAAGAGTGTATTTACAAGAAGAATCTAAACATCTTGGATTAGTTA
ATTATTTATCGCGAATATACAATCAATCCGGTGATCGTCTTCTACGTCAAATAGAAGCAT
ATAATGATAATGAAGTAGATGTTGCAGTATTATTAGAAGATTCACAAATGCGTGATATAT
TACAACAAGAGAAAGAACAAGCAGAATCAGATCTGATCATTTTACAAACTCGTACAGCAA
CAATTCAAGCAGAATATGAAAATAAATTATTACAGCTTCAACAAAACATACAAGCTTTGG
AAATAAAANATCAAGATTTGGAGGTAAACATTATATATATATGTATACATAGCGTATTCA
TTGAACACTGTTTCTAAATAATGAGAATATTGAAATATTATTCAGTACTTATCGTATTTT
CTACCATATTGATGGTTACAAGTGATCTTTAGATGTTCTGAAAATTTAAGAATATATTAC
CAGGGTATGCACTTTTCAT

consensusID : consensus_7292#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 535
fasta sequence

                              [CTGGATGGAAGGCATCTTGGATTAGTTAATTATTTATCGCGAATATACAATCAATCCGGCGATCGTCTTCTACGTCAAATAGAAGCATATAATGATAATGAAGTAGATGTTGCAGTATTATTAGAAGATTCACAAATGCGTGATATATTACAACAAGAGAAAGAACAAGCAGAATCAGATCTGATCATTTTACAAACTCGTACAGCAACAATTCAAGCAGAATATGAAAATAAATTATTACAGCTTCAACAAAACATACAAGCTTTGGAAATAAAAAATCAAGATTTGGAGAATCAGTGCACTAACCAAGATGGTCAACTGTCTACACTACGTGCTCAACTATTGGATAAAGATAAAAGCACAACAGAACGTGAGCGTAATTTACAGCAACGACTACGTGAACTAGAAGATACTTTGAACACAGTTAAAAATTCACAATTGANATCACAGATACAAGTGAATGGCATAGTTGATAACTCTATCGAATCGGTAAACACAACAAGTGTTATTTCTTCTGGTGCTAATGCTCCACCAC]

[+] EMBL CD178292             [CTGGATGGAAGGCATCTTGGATTAGTTAATTATTTATCGCGAATATACAATCAATCCGGCGATCGTCTTCTACGTCAAATAGAAGCATATAATGATAATGAAGTAGATGTTGCAGTATTATTAGAAGATTCACAAATGCGTGATATATTACAACAAGAGAAAGAACAAGCAGAATCAGATCTGATCATTTTACAAACTCGTACAGCAACAATTCAAGCAGAATATGAAAATAAATTATTACAGCTTCAACAAAACATACAAGCTTTGGAAATAAAAAATCAAGATTTGGAGAATCAGTGCACTAACCAAGATGGTCAACTGTCTACACTACGTGCTCAACTATTGGATAAAGATAAAAGCACAACAGAACGTGAGCGTAATTTACAGCAACGACTACGTGAACTAGAAGATACTTTGAACACAGTTAAAAATTCACAATTGANATCACAGATACAAGTGAATGGCATAGTTGATAACTCTATCGAATCGGTAAACACAACAAGTGTTATTTCTTCTGGTGCTAATGCTCCACC  ]
[+] EMBL CD178418             [                     TTAGTTAATTATTTATCGCGAATATACAGTCAATCCGGTGATCGTCTTCTACGTCAAATAGAAGCATATAATGATAATGAAGTAGATGTTGCAGTATTATTAGAAGATTCACAAATGCGTGATATATTACAACAAGAGAAAGAACAAGCAGAATCAGATCTGATCATTTTACAAACTCGTACAGCAACAATTCAAGCAGAATATGAAAATAAATTATTACAGCTTCAACAAAACATACAAGCTTTGGAAATAAAAAATCAAGATTTGGAGAATCAGTGCACTAACCAAGATGGTCAACTGTCTACACTACGTGCTCAACTATTGGATAAAGATAAAAGCACAACAGAACGTGAGCGTAATTTACAGCAACGACTACGTGAACTAGAAGATACTTTGAACACAGTTAAAAATTCACAATTGAAATCACAGATACAAGTGAATGGCATAGTTGATAACTCTATCGAATCGGTAAACACAACAAGTGTTATTTCTTCTGGTGCTAATGCNTCACCAC]




>consensus_7292#1
CTGGATGGAAGGCATCTTGGATTAGTTAATTATTTATCGCGAATATACAATCAATCCGGC
GATCGTCTTCTACGTCAAATAGAAGCATATAATGATAATGAAGTAGATGTTGCAGTATTA
TTAGAAGATTCACAAATGCGTGATATATTACAACAAGAGAAAGAACAAGCAGAATCAGAT
CTGATCATTTTACAAACTCGTACAGCAACAATTCAAGCAGAATATGAAAATAAATTATTA
CAGCTTCAACAAAACATACAAGCTTTGGAAATAAAAAATCAAGATTTGGAGAATCAGTGC
ACTAACCAAGATGGTCAACTGTCTACACTACGTGCTCAACTATTGGATAAAGATAAAAGC
ACAACAGAACGTGAGCGTAATTTACAGCAACGACTACGTGAACTAGAAGATACTTTGAAC
ACAGTTAAAAATTCACAATTGANATCACAGATACAAGTGAATGGCATAGTTGATAACTCT
ATCGAATCGGTAAACACAACAAGTGTTATTTCTTCTGGTGCTAATGCTCCACCAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7292#0      GTGGTTGTTCAATGGTATTTGAACATCCTCGTGCCGTAAATGTTATTGCTCTATGCCTCC 60
consensus_7292#1      ------------------------------------------------------------
                                                                                  

consensus_7292#0      TTCATCCAAGCTACCAGACAAAAACTTTAGTACTTGAACTTTTAACGGTTGTTTGCCTAA 120
consensus_7292#1      ------------------------------------------------------------
                                                                                  

consensus_7292#0      TCACCGGTGGACATGAACGTGTATTAAATGCATTTGATAATTTTAAAAAGGAAGTTGGGG 180
consensus_7292#1      ------------------------------------------------------------
                                                                                  

consensus_7292#0      AATCTACACGTTTTGAATATTTAATACATTATTTTTTCACACATGAATCTGAATCTTCAG 240
consensus_7292#1      ------------------------------------------------------------
                                                                                  

consensus_7292#0      ATTATAATATGGATTTTATGGTATCTTGTATGCAGTTTTTCAATATAGTTGTACATTCAA 300
consensus_7292#1      ------------------------------------------------------------
                                                                                  

consensus_7292#0      CAGATGACATAATGTTAAGAGTGTATTTACAAGAAGAATCTAAACATCTTGGATTAGTTA 360
consensus_7292#1      -----------------------------CTGGATGGA---AGGCATCTTGGATTAGTTA 28
                                                   *  ** * *   *  ****************

consensus_7292#0      ATTATTTATCGCGAATATACAATCAATCCGGTGATCGTCTTCTACGTCAAATAGAAGCAT 420
consensus_7292#1      ATTATTTATCGCGAATATACAATCAATCCGGCGATCGTCTTCTACGTCAAATAGAAGCAT 88
                      ******************************* ****************************

consensus_7292#0      ATAATGATAATGAAGTAGATGTTGCAGTATTATTAGAAGATTCACAAATGCGTGATATAT 480
consensus_7292#1      ATAATGATAATGAAGTAGATGTTGCAGTATTATTAGAAGATTCACAAATGCGTGATATAT 148
                      ************************************************************

consensus_7292#0      TACAACAAGAGAAAGAACAAGCAGAATCAGATCTGATCATTTTACAAACTCGTACAGCAA 540
consensus_7292#1      TACAACAAGAGAAAGAACAAGCAGAATCAGATCTGATCATTTTACAAACTCGTACAGCAA 208
                      ************************************************************

consensus_7292#0      CAATTCAAGCAGAATATGAAAATAAATTATTACAGCTTCAACAAAACATACAAGCTTTGG 600
consensus_7292#1      CAATTCAAGCAGAATATGAAAATAAATTATTACAGCTTCAACAAAACATACAAGCTTTGG 268
                      ************************************************************

consensus_7292#0      AAATAAAANATCAAGATTTGGAGGTAAACATTATATATATATGTATACATAGC-GTATTC 659
consensus_7292#1      AAATAAAAAATCAAGATTTGGAG--AATCAGTGCACTAACCAAGATGGTCAACTGTCTAC 326
                      ******** **************  ** ** *  *   *     **    * * ** * *

consensus_7292#0      ATTGAACACT--GTTTCTAAATAATGAGAATATTGAAATATTAT-TCAGTACTTATCGTA 716
consensus_7292#1      ACTACGTGCTCAACTATTGGATAAAGATAAAAGCACAACAGAACGTGAGCGTAATTTACA 386
                      * *     **    *  *  **** ** ** *    ** *  *  * **      *   *

consensus_7292#0      TTTTCTACCATATTGATGGTTACAAGTGATCTTTAGATGTTCTGAAAATTTAAGAAT-AT 775
consensus_7292#1      GCAACGACTACGTGAAC---TAGAAGATACTTTGAACACAGTTAAAAATTCACAATTGAN 443
                          * ** *  *  *    ** ***  *  ** *       * ****** *  * * * 

consensus_7292#0      ATTACCAGGGTATGCACTTTTCAT------------------------------------ 799
consensus_7292#1      ATCACAGATACAAGTGAATGGCATAGTTGATAACTCTATCGAATCGGTAAACACAACAAG 503
                      ** **      * *    *  ***                                    

consensus_7292#0      --------------------------------
consensus_7292#1      TGTTATTTCTTCTGGTGCTAATGCTCCACCAC 535