cluster # 7295

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 7295 cluster # 7295 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7295#0 length = 556 sequences # 4

consensus_7295#1 length = 424 sequences # 1

consensusID : consensus_7295#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 556
fasta sequence

                              [GCAAATCTATCCAAAGAACCTGAACCACATACAATAGTTAAAATACCACAAGAAGAAAGATTAATTTAAATATTAAGAAATGGATTACCTTTTTTTTCTATGGTTTGTTCCGTTTGTTTTGGTTTTTTTTTTGGATTTTTTAAGTTTGATTTCGGTATTTCCCCCCCCCCTCCTTTATCTCATCTTGATTTGTTTCCATCTATCTATCTATCTATAGCGTAAATGTATTGAATTTGCATTGAAAGCTAGACCAGTGAAACGTTATATACCAAAAGAAAATTTTCAATATCGTATATGGTGGTTTATTACATCACAACCATTTGAATATTGCATTTTTATTTTTATATTAATTAATACAATCTCATTGGCAATGAAAGTGAGCTTCTTTTTCTTTGTTACTATTGTTTGTTTATTTATGTTTACTACTTATGAATTAGATAGTGTTGAAGTAAATAAGTAGTATAGAAGAAGTTGTATAAAGAAAAATGATAACTTATGATTGGATTNTCTATCTACTTTTTATGAAGGAGAAGAAATAATTCATTAAAAGTAAACA]

[+] EMBL CD168343             [GCAAATCTATCCAAAGAACCTGAACCACATACAATAGTTAAAATACCACAAGAAGAAAGATTAATTTAAATATTAAGAAATGGATTACCTTTTTTTTCTATGGTTTGTTCCGTTTGTTTTGGTTTTTTTTTTGGATTTTTTAAGTTTGATTTCGGTATTTCCCCCCCCCCTCCTTTATCTCATCTTGATTTGTTTCCATCTATCTATCTATCTATAGCGTAAATGTATTGAATTTGCATTGAAAGCTAGACCAGTGAAACGTTATATACCAAAAGAAAATTTTCAATATCGTATATGGTGGTTTATTACATCACAACCATTTGAATATTGCATTTTTATTTTTATATTAATTAATACAATCTCATTGGCAATGAAAGTGAGCTTCTTTTTCTT                                                                                                                                                                   ]
[+] EMBL CD152680             [                                 ATAGTTAAAATACCACAAGAAGAAAGATTAATTTAAATATTAAGAAATGGATTACCTTTTTTTTCTATGGTTTGTTCCGTTTGTTTTGGTTTTTTTTTTGGATTTTTTAAGTTTGATTTCGGTATTTCCCCCCCCCCTCCTTTATCTCATCTTGATTTGTTTCC    ATCTATCTATCTATAGCGTAAATGTATTGAATTTGCATTGAAAGCTAGACCAGTGAAACGTTATATACCAAAAGAAAATTTTCAATATCGTATATGGTGGTTTATTACATCACAACCATTTGAATATTGCATTTTTATTTTTATATTAATTAATACAATCTCATTGGCAATGAAAGTGAGCTTCTTTTTCTTTGTTACTATTGTTTGTTTATTTATGTTTACTACTTATGAATTAGATAGTGTTGAAGTAAATAAGTAGTATAGAAGAAGTTGTATAAAGAAAAATGATAACTTATGATTGGATTNTCTATCTACTTTTTATGAAGGAGAAGAAATAATTCATTAAAAGTAAACA]
[+] EMBL CD152783             [                                 ATAGTTAAAATACCACAAGAAGAAAGATTAATTTAAATATTAAGAAATGGATTACCTTTTTTTTCTATGGTTTGTTCCGTTTGTTTTGGTTTTTTTTTTGGATTTTTTAAGTTTGATTTCGGTATTT CCCCCCCCCTCCTTTATCTCATCTTGATTTGTTTCCATCTATCTATCTATCTATAGCGGAAATGTATTGGATTTGCATTGAAAGCTAAACCAGTGAAACGTTATATACCAAAAGAAAATTTTCAATATCGTATATGGTGGTTTATTACATCACAACCATTTGAATATTGCATTTTTATTTTTATATTAATTAATACAATCTCCTTGG                                                                                                                                                                                            ]
[+] EMBL CD152828             [                                 ATAGTTAAAATACCACAAGAAGAAAGATTAATTTAAATATTAAGAAATGGATTACCTTTTTTTTCTATGGTTTGTTCCGTTTGTTTTGGTTTTTTTTTTGGATTTTTTAAactcc                                                                                                                                                                                                                                                                                                                                                                                                                        ]




>consensus_7295#0
GCAAATCTATCCAAAGAACCTGAACCACATACAATAGTTAAAATACCACAAGAAGAAAGA
TTAATTTAAATATTAAGAAATGGATTACCTTTTTTTTCTATGGTTTGTTCCGTTTGTTTT
GGTTTTTTTTTTGGATTTTTTAAGTTTGATTTCGGTATTTCCCCCCCCCCTCCTTTATCT
CATCTTGATTTGTTTCCATCTATCTATCTATCTATAGCGTAAATGTATTGAATTTGCATT
GAAAGCTAGACCAGTGAAACGTTATATACCAAAAGAAAATTTTCAATATCGTATATGGTG
GTTTATTACATCACAACCATTTGAATATTGCATTTTTATTTTTATATTAATTAATACAAT
CTCATTGGCAATGAAAGTGAGCTTCTTTTTCTTTGTTACTATTGTTTGTTTATTTATGTT
TACTACTTATGAATTAGATAGTGTTGAAGTAAATAAGTAGTATAGAAGAAGTTGTATAAA
GAAAAATGATAACTTATGATTGGATTNTCTATCTACTTTTTATGAAGGAGAAGAAATAAT
TCATTAAAAGTAAACA

consensusID : consensus_7295#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 424
fasta sequence

                              [CACAAACATCGAATATTTCGAATACAACCACTAACAATGAATCTAAACCTGGACTTAGTCCTGGTATATTAGCAATTGTCATTATTATACCAATATTAGTTATTATTGGACTTAGCATAGGTGGTTATTTTTTATATCGTTGGTTACATAAACGTCGTTCATCACATGATATATATCAACCAAATTATATGGAAAATGAAGCGAATCTATCCAAAGAACCTGAACCACATACAATAGTTAAAATACCACAAGAAGAAAGATTAATTTAAATATTAATAAATGAAATAACCCTTCTCTTTTCTACCAATATGGTAAGGTTATAAGTTGGTTGTGATATCGAATTATTGCCGTTTTTACAGAAAAGCTATGGAAAGTCTTATGTTCCTTTCGAATAATATCGAATTGTTTCCACTTTTTGATCAAC]

[+] EMBL CD196671             [CACAAACATCGAATATTTCGAATACAACCACTAACAATGAATCTAAACCTGGACTTAGTCCTGGTATATTAGCAATTGTCATTATTATACCAATATTAGTTATTATTGGACTTAGCATAGGTGGTTATTTTTTATATCGTTGGTTACATAAACGTCGTTCATCACATGATATATATCAACCAAATTATATGGAAAATGAAGCGAATCTATCCAAAGAACCTGAACCACATACAATAGTTAAAATACCACAAGAAGAAAGATTAATTTAAATATTAATAAATGAAATAACCCTTCTCTTTTCTACCAATATGGTAAGGTTATAAGTTGGTTGTGATATCGAATTATTGCCGTTTTTACAGAAAAGCTATGGAAAGTCTTATGTTCCTTTCGAATAATATCGAATTGTTTCCACTTTTTGATCAAC]




>consensus_7295#1
CACAAACATCGAATATTTCGAATACAACCACTAACAATGAATCTAAACCTGGACTTAGTC
CTGGTATATTAGCAATTGTCATTATTATACCAATATTAGTTATTATTGGACTTAGCATAG
GTGGTTATTTTTTATATCGTTGGTTACATAAACGTCGTTCATCACATGATATATATCAAC
CAAATTATATGGAAAATGAAGCGAATCTATCCAAAGAACCTGAACCACATACAATAGTTA
AAATACCACAAGAAGAAAGATTAATTTAAATATTAATAAATGAAATAACCCTTCTCTTTT
CTACCAATATGGTAAGGTTATAAGTTGGTTGTGATATCGAATTATTGCCGTTTTTACAGA
AAAGCTATGGAAAGTCTTATGTTCCTTTCGAATAATATCGAATTGTTTCCACTTTTTGAT
CAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7295#0      GCAAATCTATCCAAAGAACCTGAACCACATACAATAGTTAAAATACCACAAGAAGAAAGA 60
consensus_7295#1      ---------------------CACAAACATCGAATATTTCGAATACAACCACT--AACAA 37
                                            *   ****  **** **  ***** ** *    **  *

consensus_7295#0      TTAATTTAAATATTAAGAAATGGATTACCTTTTTTTTCTATGGT--TTGTTCCGTTTGTT 118
consensus_7295#1      TGAATCTAAACCT--GGACTTAGTCCTGGTATATTAGCAATTGTCATTATTATACCAATA 95
                      * *** ****  *   **  * *      * * **  * ** **  ** **       * 

consensus_7295#0      TTGGTTTTTTTTTTGGATTTTTTAAGTTTGATTTCGGTATTTCCCCCCCCCCTCCTTTAT 178
consensus_7295#1      TTAGTTATTATT--GGACTTAGCATAGGTGGTTATTTTTTATATCGTTGGTTACATAAAC 153
                      ** *** ** **  *** **   *    ** **    * * *  *        * *  * 

consensus_7295#0      CTCATCTTGATTTGTTTCCATCTATCTATCTATCTATAGCGTAAATGTATTGAATTTGCA 238
consensus_7295#1      GTCGTTC--ATCACATGATATATATCAACCAAATTATATGGAAAATGAAGCGAATCTATC 211
                       ** *    **    *   ** **** * * *  ****  * ***** *  **** *   

consensus_7295#0      TTGAAAGC-TAGACCA---GTGAAACGTTATATACCAAAAGAAAAT-------TTTCAAT 287
consensus_7295#1      CAAAGAACCTGAACCACATACAATAGTTAAAATACCACAAGAAGAAAGATTAATTTAAAT 271
                         * * * *  ****      * *  * * ****** ***** *        *** ***

consensus_7295#0      ATCG-TATATGG--TGGTTTATTACATCACAACCATTTGAATA---TTGCATTTTTATTT 341
consensus_7295#1      ATTAATAAATGAAATAACCCTTCTCTTTTCTACCAATATGGTAAGGTTATAAGTTGGTTG 331
                      **   ** ***   *      *  * *  * **** *    **   **  *  **  ** 

consensus_7295#0      TTATATT-AATTAATACAATCTCATTGGCAATG--AAAGTGAGCTTCTTTTTCTTTGTTA 398
consensus_7295#1      TGATATCGAATTATTGCCGTTTTTACAGAAAAGCTATGGAAAGTCTTATGTTCCTTTCGA 391
                      * ****  ***** * *  * *     * ** *  *  *  **  *  * *** **   *

consensus_7295#0      CTATTGTTTGTTTATTTATGTTTACTACTTATGAATTAGATAGTGTTGAAGTAAATAAGT 458
consensus_7295#1      ATAATATCGAATTGTTTCCACTTTTTGATCAAC--------------------------- 424
                       ** * *    ** ***    **  *  * *                             

consensus_7295#0      AGTATAGAAGAAGTTGTATAAAGAAAAATGATAACTTATGATTGGATTNTCTATCTACTT 518
consensus_7295#1      ------------------------------------------------------------
                                                                                  

consensus_7295#0      TTTATGAAGGAGAAGAAATAATTCATTAAAAGTAAACA 556
consensus_7295#1      --------------------------------------