cluster # 7298

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Schistosoma mansoni
cluster # 7298 cluster # 7298 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7298#0 length = 941 sequences # 4

consensus_7298#1 length = 295 sequences # 1

consensusID : consensus_7298#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 941
fasta sequence

                              [CCCCTGCTAAACCTGATCTTTATCGTCTTCATTGTTATTATTCGTGGGTGTATAGCATTAGATAACATTCATTGTAATTCCCTACTTCCTTGTTTTACAGGATGCTTTGGTGATCCTGGATCCCATCCTGTTAGTGCATTTCATAAACCAGCTTCCAGCTGAAGAGGAAATTAGGAAAAGACGTTGGAAGTGGATAGGACATACATTAAGGAAATCACCAATGTGCATCACGACTCAATCCCTAACTTGGAATCCGGAAGGGAAGCGGAAAAGAGGAAGGCCAAAGAACACACTACGCCGGGAGATATAAGCCGATATGAAAAGGCTGAATAGCAACTGGAAAGAACTGGAAAAGAAGGCTCAAGACAGAGTTGGATGGAGAATGCTGGTGAGCGGCCTATGGTCCTCGACGAGGGGTAACAGGCGTAAGTAAGTAATTGAGCACGGTCAATCGTTTTCTAACTTCTATGAATTCATGGTTAAAAACTCTACCTCAACACGGATCACGTTT-CACAAATCTCCGTCATAATCAATTTTCAACTTGCATTATGTAATATACTACTGTAACATTGATATTAAGAAATAGCATATTTTAGTAAATACTTATAATCAATCATATCAAATTTCATTATTCCTTCAATTTATTTTTATTCTTATGTTTTTCTTTTTTTAGAAAAATGCTCATGGAATTCATTTATTTGAAAAAGTTTGCAAACAATTAGATTTACAAGAAACTGAATATTTTGGCTTGACATATCGAACTAGCTTACGTGTAGATGTAAGTATATCACAATACTATTATTTAAAAAACGAAGTGATTATACGTAATTATGTAATTCAATCCTAATAATTAATAACTGACATTGGATTGGTTGAAGTTAGACATTAACACCGTTGGATGCCGGCCGGCTGAGTGGTCTAGAGGTTAAACGCTCGTGCGC]

[+] EMBL CD122063             [CCCCTGCTAAACCTGATCTTTATCGTCTTCATTGTTATTATTCGTGGGTGTATAGCATTAGATAACATTCATTGTAATTCCCTACTTCCTTGTTTTACAGGATGCTTTGGTGATCCTGGATCCCATCCTGTTAGTGCATTTCATAAACCAGCTTCCAGCTGAAGAGGAAATTAGGAAAAGACGTTGGAAGTGGATAGGACATACATTAAGGAAATCACCAATGTGCATCACGACTCAATCCCTAACTTGGAATCCGGAAGGGAAGCGGAAAAGAGGAAGGCCAAAGAACACACTACGCCGGGAGATATAAGCCGATATGAAAAGGCTGAATAGTAACTGGAAAGAACTGGAAAGGAAGGCTCAAGACAGAGTTGGATGGGGAATGCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CD098503             [                                                                                                                                                                                                                                                                                                                                            GCAACTGGAAAGAACTGGAAAAGAAGGCTCAAGACAGAGTTGGATGGAGAATGCTGGTGAGCGGCCTATGGTCCTCGACGAGGGGTAACAGGCGTAAGTAAGTAATTGAGCACGGTCAATCGTTTTCTAACTTCTATGAATTCATGGTTAAAAACTCTACCTCAACACGGATCACGTTT CACAAATCTCCGTCATAATCAATTTTCAACTTGCATTATGTAATATACTACTGTAACATTGATATTAAGAAATAGCATATTTTAGTAAATACTTATAATCAATCATATCAAATTTCATTATTCCTTCAATTTATTTTTATTCTTATGTTTTTCTTTTTTTAGAAAAATGCTCATGGAATTCATTTATTTGAAAAAGTTTGCAAACAATTAGATTTACAAGAAACTGAATATTTTGGCTTGACATATCGAACTAGCTTACGTGTAGATGTAAGTATATCACAATACTATTATTTANAAAACGAAGTGATTATACGTAATTATGTAATTCAATCCTAATAATTAATAACTGACATTGGATTGGTTGAAGTTAGACATTAACACCGTTGGATGCCGGCCGGCTGAGTGGTCTAGAGGTTAAACGCTCGTGCGC]
[+] EMBL CD098506             [                                                                                                                                                                                                                                                                                                                                            GCAACTGGAAAGAACTGGAAAAGAAGGCTCAAGACAGAGTTGGATGGAGAATGCTGGTGAGCGGCCTATGGTCCTCGACGAGGGGTAACAGGCGTAAGTAAGTAATTGAGCACGGTCAATCGTTTTCTAACTTCTATGAATTCATGGTTAAAAACTCTACCTCAACACGGATCACGTTT CACAAATCTCCGTCATAATCAATTTTCAACTTGCATTATGTAATATACTACTGTAACATTGATATTAAGAAATAGCATATTTTAGTAAATACTTATAATCAATCATATCAAATTTCATTATTCCTTCAATTTATTTTTATTCTTATGTTTTTCTTTTTTTAGAAAAATGCTCATGGAATTCATTTATTTGAAAAAGTTTGCAAACAATTAGATTTACAAGAAACTGAATATTTTGGCTTGACATATCGAACTAGCTTACATGTAGATGTAAGTATATCACAATACTATTATTTAAAAAACGAAGTGATTATACGTAATTATGTAATTCAATCCTAATAATTAATAACTGACATCGGATTGGTTGAAGNTAGACATTAACACCGTTGGATGCCGGCCGGCT                              ]
[+] EMBL CD088592             [                                                                                                                                                                                                                                                                                                                                            tCAACTGGAAAGAACTGGAAAAGAAGGCTCAAGACAAATTTGGATGGAGAATGCTGGTGAGCGGCCTATGGTCCTCGACGAGGGGTAACAGGCGTATGTAAGTAATTGAGCACGGTCAATCGTTTTCTAACTTCTATGAATTCATGGTTAAAAACTCTACCTC ACAC GATCACGTTTACACAAATCTCCGTCATAATCAATTTTCAACTTGCATTATGTAATATACTACTGTAACATTGATATTAAGAAATAGCATATTTTAGTAAATACTTATAATCAATCATATCAAATTCCATTATTCCTTCAATTTATTTTTATTCTTATGTTTTTCTTTTTTTAGAAAAATGCTCATGGAATTCATTTATTTGAAAAAGTTTGCAAACAATTAGATTTACAAGAAACTGAATATTNTGGCTTGACATATCGAACTAGCTTACGTGTAGATGTAAGTATATCACAATACTATTATTTNAAAAACGAAGTGATTATACGTAATTATGTAATTCAATCCTAATAATT ATAACTGACA                                                                              ]




>consensus_7298#0
CCCCTGCTAAACCTGATCTTTATCGTCTTCATTGTTATTATTCGTGGGTGTATAGCATTA
GATAACATTCATTGTAATTCCCTACTTCCTTGTTTTACAGGATGCTTTGGTGATCCTGGA
TCCCATCCTGTTAGTGCATTTCATAAACCAGCTTCCAGCTGAAGAGGAAATTAGGAAAAG
ACGTTGGAAGTGGATAGGACATACATTAAGGAAATCACCAATGTGCATCACGACTCAATC
CCTAACTTGGAATCCGGAAGGGAAGCGGAAAAGAGGAAGGCCAAAGAACACACTACGCCG
GGAGATATAAGCCGATATGAAAAGGCTGAATAGCAACTGGAAAGAACTGGAAAAGAAGGC
TCAAGACAGAGTTGGATGGAGAATGCTGGTGAGCGGCCTATGGTCCTCGACGAGGGGTAA
CAGGCGTAAGTAAGTAATTGAGCACGGTCAATCGTTTTCTAACTTCTATGAATTCATGGT
TAAAAACTCTACCTCAACACGGATCACGTTTCACAAATCTCCGTCATAATCAATTTTCAA
CTTGCATTATGTAATATACTACTGTAACATTGATATTAAGAAATAGCATATTTTAGTAAA
TACTTATAATCAATCATATCAAATTTCATTATTCCTTCAATTTATTTTTATTCTTATGTT
TTTCTTTTTTTAGAAAAATGCTCATGGAATTCATTTATTTGAAAAAGTTTGCAAACAATT
AGATTTACAAGAAACTGAATATTTTGGCTTGACATATCGAACTAGCTTACGTGTAGATGT
AAGTATATCACAATACTATTATTTAAAAAACGAAGTGATTATACGTAATTATGTAATTCA
ATCCTAATAATTAATAACTGACATTGGATTGGTTGAAGTTAGACATTAACACCGTTGGAT
GCCGGCCGGCTGAGTGGTCTAGAGGTTAAACGCTCGTGCGC

consensusID : consensus_7298#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 295
fasta sequence

                              [TTTCCTCAATGTATGTCCTATCCACTTCCAGCACTTCTTCCTGATTTCTTCCTCCTCTGAATGGAATCTGGTTTGTTCTCTCCCACAATATGTTGTTGCTGATAGTGTCTAGCCAACGGATCCGAAGTATTTTACGTAGACAACTGTTAATAAACACCTGTATCTTCTGGATGATGGCTTTCGTAGTTCTCCAGGTTTCCACCGCATATAGTGGCATTTAGGTTGAAAATTCTGATCTTGGTGTTGGTTGACAGTTGTTTTGAGTTCCAGATGTTCTTCAGTTGTAAATATGCTG]

[+] EMBL CD195398             [TTTCCTCAATGTATGTCCTATCCACTTCCAGCACTTCTTCCTGATTTCTTCCTCCTCTGAATGGAATCTGGTTTGTTCTCTCCCACAATATGTTGTTGCTGATAGTGTCTAGCCAACGGATCCGAAGTATTTTACGTAGACAACTGTTAATAAACACCTGTATCTTCTGGATGATGGCTTTCGTAGTTCTCCAGGTTTCCACCGCATATAGTGGCATTTAGGTTGAAAATTCTGATCTTGGTGTTGGTTGACAGTTGTTTTGAGTTCCAGATGTTCTTCAGTTGTAAATATGCTG]




>consensus_7298#1
TTTCCTCAATGTATGTCCTATCCACTTCCAGCACTTCTTCCTGATTTCTTCCTCCTCTGA
ATGGAATCTGGTTTGTTCTCTCCCACAATATGTTGTTGCTGATAGTGTCTAGCCAACGGA
TCCGAAGTATTTTACGTAGACAACTGTTAATAAACACCTGTATCTTCTGGATGATGGCTT
TCGTAGTTCTCCAGGTTTCCACCGCATATAGTGGCATTTAGGTTGAAAATTCTGATCTTG
GTGTTGGTTGACAGTTGTTTTGAGTTCCAGATGTTCTTCAGTTGTAAATATGCTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7298#0      CCCCTGCTAAACCTGATCTTTATCGTCTTCATTGTTATTATTCGTGGGTGTATAGCATTA 60
consensus_7298#1      ------------------------------------------------------------
                                                                                  

consensus_7298#0      GATAACATTCATTGTAATTCCCTACTTCCTTGTTTTACAGGATGCTTTGGTGATCCTGGA 120
consensus_7298#1      ------------------------------------------------------------
                                                                                  

consensus_7298#0      TCCCATCCTGTTAGTGCATTTCATAAACCAGCTTCCAGCTGAAGAGGAAATTAGGAAAAG 180
consensus_7298#1      ------------------------------------------------------------
                                                                                  

consensus_7298#0      ACGTTGGAAGTGGATAGGACATACATTAAGGAAATCACCAATGTGCATCACGACTCAATC 240
consensus_7298#1      ------------------------------------------------------------
                                                                                  

consensus_7298#0      CCTAACTTGGAATCCGGAAGGGAAGCGGAAAAGAGGAAGGCCAAAGAACACACTACGCCG 300
consensus_7298#1      ------------------------------------------------------------
                                                                                  

consensus_7298#0      GGAGATATAAGCCGATATGAAAAGGCTGAATAGCAACTGGAAAGAACTGGAAAAGAAGGC 360
consensus_7298#1      ------------------------------------------------------------
                                                                                  

consensus_7298#0      TCAAGACAGAGTTGGATGGAGAATGCTGGTGAGCGGCCTATGGTCCTCGACGAGGGGTAA 420
consensus_7298#1      ------------------------------------------------------------
                                                                                  

consensus_7298#0      CAGGCGTAAGTAAGTAATTGAGCACGGTCAATCGTTTTCTAACTTCTATGAATTCATGGT 480
consensus_7298#1      ------------------TTTCCTCAATGTATGTCCTATCCACTTCCAGCACTTCTTCCT 42
                                        *   * *  *  **    *    ***** *  * *** *  *

consensus_7298#0      TAAAAACTCTACCTCAACACGGATCACGTTTCACAAATCTCCGTCATAATCAATTTTCAA 540
consensus_7298#1      GATTTCTTCCTCCTCTGAATGGAATCTGGTTTGT---TCTCTCCCACAATATGTTGTTG- 98
                       *     **  ****   * ***    * **      ****   ** ***   ** *   

consensus_7298#0      CTTGCATTATGTAATATACTACTGTAACATTGATATTAAGAAATAGCATATTTTAGTAAA 600
consensus_7298#1      CTGATAGTGTCTAGCCAACGGATCCGAAGT--ATTTTACGTAG--ACAACTGTTAATAAA 154
                      **   * * * **    **   *   *  *  ** *** * *    **  * *** ****

consensus_7298#0      TACTTATAATCAATC-ATATCAAATTTCATTATTCCTTCAATTTATTTTTATTCTTATGT 659
consensus_7298#1      CACCTGTATCTTCTGGATGATGGCTTTCGTAGTTCTCCAGGTTTCCACCGCATATAGTGG 214
                       ** * **     *  **      **** *  ***      ***        * *  ** 

consensus_7298#0      TTTTCTTTTTTTAGAAAAATGCTCATGGAATTCATTTATTTGAAAAAGTTTGCAAACAAT 719
consensus_7298#1      CATT-TAGGTTGAAAATTCTGATCTTGGTGTTGGTTGAC---AGTTGTTTTGAGTTCCAG 270
                        ** *   ** * **   ** ** ***  **  ** *    *     ****    * * 

consensus_7298#0      TAGATTTACAAGAAACTGAATATTTTGGCTTGACATATCGAACTAGCTTACGTGTAGATG 779
consensus_7298#1      ATGTTCTTCAGTTG--TAAATATGCTG--------------------------------- 295
                        * * * **      * *****  **                                 

consensus_7298#0      TAAGTATATCACAATACTATTATTTAAAAAACGAAGTGATTATACGTAATTATGTAATTC 839
consensus_7298#1      ------------------------------------------------------------
                                                                                  

consensus_7298#0      AATCCTAATAATTAATAACTGACATTGGATTGGTTGAAGTTAGACATTAACACCGTTGGA 899
consensus_7298#1      ------------------------------------------------------------
                                                                                  

consensus_7298#0      TGCCGGCCGGCTGAGTGGTCTAGAGGTTAAACGCTCGTGCGC 941
consensus_7298#1      ------------------------------------------