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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7307#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1432 fasta sequence
[CGAGGCCATTAATTCGGCACCA-GGTCTATCTATATAAACGACCAATGCTTCATGAGGCACGAAATAAGCAGGAGTTAGTCAAAGATCATGTAGCTGTCAGATTTAATGACATCGAAGTTGAAAATATTGTAACACATGATACTGTCGAAGAACCTCATTGTAAACGGTGTGATGAACCATTTACTGAAGATGAAAATATCGTTTCTGTTAAAGATGACATCTATCATCCAACATGTTTTGTATGTACTCAATGTTTTCAACCATTACCTAACAAAGAATTTTATGAGTTTGAAGGCCGAAGATATTGTAAATATGATTTTCAAGTACTTTTTGCACCTTTGTGTTTTAAATGTGGTGAATTTATCATGTCAAAAGTGGTGAAAGCAATGAATCGAAGCTGGCATCCTGAATGTTTAGTTTGTAATGAATGTGGTATTCAAATTATAAGCAAAGGATTTCAAAGACATAATACAAGAATCCTGTGTAAAGATTGTTGGCCTGTTATATGTCAGGAATTAGTTGGCTGTCATATCTGTCAAACATGTCATAAACCAATTGAATTAAATAAACACATCAAATTTATGGGTGATTTTCATCATCCACATCATTTTCATTGTTTTGATTGTGATCAAGAACTTGGTTTGGATGCACATGAACGTGGTGGTGAATTATATTGTCTTAAATGTTTCAGTCGTTCTGGTGTATCAATCTGCTCAGCATGCAGACGTCCAATTGACGGTCGTATAGTTTGGGCACTTGGTAAAGTTTGGCATGTTGAACATTNTGTATGTCATCACTGTGAAATACCATTTATGGGTAGTAGGGTTTATGAGTGGCAAGGGCACGCCTACTGTCTACTACATTATCAATCTANAATTGGAAGTGTCTGTCATATATGCGCGAAACCGGTTACTGATACATTGGTTAAATTTACTAATAAAATCTATTGCCCTGAACACTTTCTTTGTTCACTGTGTGATAGAAAATTAGATGAAAAATCCAAACTTTATGAAATTGATTTAAAACCAGTTTGTAAAGAATGTTATGATAAGTTACCAATGCAATGGAAAAAAATCCTGGCAAAAATTCATCGTTCAGATAGACAAAAATGGAGTAATTAATGATGATTTGTAATATTCATAGAAATATAACAAATCTACTTTTATATTTGTATACAATCATTTAGGGAAGCTATTTCAAACAGTTGAACTATATTTTTTTTTAAAAAACAAAAACAAACAATCATTTTTATAAACAAATTATATAAGCTACTTTTTAGTAATCTATTCAATGTTTCAACAAAATTTTATTTTCTATAGTATTCTGTATTCAAATTGTATTCATAGTTTTCAATGTCATATACATATATTCTGATTCATCTGTACTACAATTAAAGTAATCGATGAAAATCAAAAAAAAATGTGGAGCGGGC]
[+] EMBL CD081509 [CGAGGCCATTAATTCGGCACCA GGTCTATCTATATAAACGACCAATGCTTCATGAGGCACGAAATAAGCAGGAGTTAGTCAAAGATCATGTAGCTGTCAGATTTAATGACATCGAAGTTGAAAATATTGTAACACATGATACTGTCGAAGAACCTCATTGTAAACGGTGTGATGAACCATTTACTGAAGATGAAAATATCGTTTCTGTTAAAGATGACATCTATCATCCAACATGTTTTGTATGTACTCAATGTTTTCAACCATTACCTAACAAAGAATTTTATGAGTTTGAAGGCCGAAGATATTGTAAATATGATTTTCAAGTACTTTTTGCACCTTTGTGTTTTAAATGTGGTGAATTTATCATGTCAAAAGTGGTGAAAGCAATGAATCGAAGCTGGCATCCTGAATGTTTAGTTTGTAATGAATGTGGTATTCAAATTATAAGCAAAGGATTTCAAAGACATAATACAAGAATCCTGTGTAAAGATTGTTGGCCTGTTATATGTCAGGAATTAGTTGGCTGTCATATCTGTCAAACATGTCATAAACCAATTGAATTAAATAAACACATCAAATTTATGGGTGATTTTCATCATCCACATCATTTTCATTGTTTTGATTGTGATCAAGAACTTGGTTTGGATGCACATGAACGTGGTGGTGAATTATATTGTCTTAAATGTTTCAGTCGTTCTGGTGTATCAATCTGCTCAGCATGCAGACGTCCAATTGACGGTCGTATAGTTTGGGCACTTGGTAAAGTTTGGCATGTTGAACATTNTGTATGTCATCACTGTGAAATACCATTTATGGGTAGTAGGGTTTATGAGTGGGCAGGGCACGCCTACTGTCTACTACATTATCAATCTANAATTGGAA ]
[+] EMBL CD081673 [ ATTAATTCGGCACGACGGTCTANCTATATAAACGACCAATGCTTCATGAGGCACGAAATAAGCAGGAGTTAGTCAAAGATCATGTAGCTGTCAGATTTAATGACATCGAAGTTGAAAATATTGTAACACATGATACTGTCGAAGAACCTCATTGTAAACGGTGTGATGAACCATTTACTGAAGATGAAAATATCGTTTCTGTTAAAGATGACATCTATCATCCAACATGTTTTGTATGTACTCAATGTTTTCAACCATTACCTAACAAAGAATTTTATGAGTTTGAAGGCCGAAGATATTGTAAATATGATTTTCAAGTACTTTTTGCACCTTTGTGTTTTAAATGTGGTGAATTTATCATGTCAAAAGTGGTGAAAGCAATGAATCGAAGCTGGCATCCTGAATGTTTAGTTTGTAATGAATGTGGTATTCAAATTATAAGCAAAGGATTTCAAAGACATAATACAAGAATCCTGTGTAAAGATTGTTGGCCTGTTATATGTCAGGAATTAGTTGGCTGTCATATCTGTCAAACATGTCATAAACCAATTGAATTAAATAAACACATCAAATTTATGGGTGATTTTCATCATCCACATCATTTTCATTGTTTTGATTGTGATCAAGAACTTGGTTTGGATGCACATGAACGTGGTGGTGAATTATATTGTCTTAAATGTTTCAGTCGTTCTGGTGTATCAATCTGCTCAGCATGCAGACGTCCAATTGACGGTCGTATAGTTTGGGCACTTGGTAAAGTTTGGCATGTTGAACATTNTGTATGTCATCACTGTGAAATACCATTTATGGGTAGTAGGGTTTATGAGTGGCAAGGGCACGCCTACTGTCTACTACATTATCAATCTAANATTGGAAGTGT ]
[-] EMBL CD075333 [ GGGTAGTAGGTTTTATGAGTGGCAAGGGCACGCCTACTGTCTACTACATTATCAATCTANAATTGGAAGTGTCTGTCATATATGCGCGAAACCGGTTACTGATACATTGGTTAAATTTACTAATAAAATCTATTGCCCTGAACACTTTCTTTGTTCACTGTGTGATAGAAAATTAGATGAAAAATCCAAACTTTATGAAATTGATTTAAAACCAGTTTGTAAAGAATGTTATGATAAGTTACCAATGCAATGGAAAAAAATCCTGGCAAAAATTCATCGTTCAGATAGACAAAAATGGAGTAATTAATGATGATTTGTAATATTCATAGAAATATAACAAATCTACTTTTATATTTGTATACAATCATTTAGGGAAGCTATTTCAAACAGTTGAACTATATTTTTTTTTAAAAAACAAAAACAAACAATCATTTTTATAAACAAATTATATAAGCTACTTTTTAGTAATCTATTCAATGTTTCAACAAAATTTTATTTTCTATAGTATTCTGTATTCAAATTGTATTCATAGTTTTCAATGTCATATACATATATTCTGATTCATCTGTACTACAATTAAAGTAATCGATGAAAATCAAAAAAAAATGTGGAGCGGGC]
[-] EMBL BF936214 [ ATGAAATTGATTTAAAACCAGTTTGTAAAGAATGTTATGATAAGTTACCAATGCAATGGAAAAAAATCCTGGCAAAAATCCATCGTTCAGATAGACAAAAATGGAGTAATTAATGATGATTTGTAATATTCATAGAAATATAACAAACCTACTTTTATATTTGTATACAATCATTTAGGGAAGCTATTTCAAACAGTTGAACTATATTTTTTTTTAAAAAACAAAAACAAACAATCATTTTTATAAACAAATTATATAAACTACTTTTTAGTAATCTATTCAATGTTTCAACAAAATTTTATTTTCTATAGTATTCTGTATTCAAATTGTATTCATAGTTTTCAATGTCATATACATATATTCTGATTCATCTGTACTACAATTAAAGTAATCGATGAAAATCA ]
consensusID : consensus_7307#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 173 fasta sequence
[AATAAATACTGGGATGCACACATAAAATGTTTCTAATTAATGAAATTTTTATTTTCAATAACATTTCCTCCACTTTTTTCATTCAACTCTGAAGATGTACTCAATGTTTTCAACCATTACCTAACANAGATTTTATGAGTTTGAAGGCCGAGATATTGTAATATGATTTTCAA]
[+] EMBL CD077481 [AATAAATACTGGGATGCACACATAAAATGTTTCTAATTAATGAAATTTTTATTTTCAATAACATTTCCTCCACTTTTTTCATTCAACTCTGAAGATGTACTCAATGTTTTCAACCATTACCTAACANAGATTTTATGAGTTTGAAGGCCGAGATATTGTAATATGATTTTCAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7307#0 CGAGGCCATTAATTCGGCACCAGGTCTATCTATATAAACGACCAATGCTTCATGAGGCAC 60
consensus_7307#1 ------------------------------------------------------------
consensus_7307#0 GAAATAAGCAGGAGTTAGTCAAAGATCATGTAGCTGTCAGATTTAATGACATCGAAGTTG 120
consensus_7307#1 ------------------------------------------------------------
consensus_7307#0 AAAATATTGTAACACATGATACTGTCGAAGAACCTCATTGTAAACGGTGTGATGAACCAT 180
consensus_7307#1 --------------------------AATAAATACTGGGATGCACAC----ATAAAATGT 30
* ** * ** ** ** *
consensus_7307#0 TTACTGAAGATGAAAATATCGTTTCTGTTAAAGATG-----ACATCTATCATCCAACATG 235
consensus_7307#1 TTCTAATTAATGAAATTTTTATTTTCAATAACATTTCCTCCACTTTTTTCATTCAACTC- 89
** ****** * * *** *** * ** * * **** ****
consensus_7307#0 TTTTGTATGTACTCAATGTTTTCAACCATTACCTAACAAAGAATTTTATGAGTTTGAAGG 295
consensus_7307#1 -TGAAGATGTACTCAATGTTTTCAACCATTACCTAACANAGA-TTTTATGAGTTTGAAGG 147
* ******************************** *** *****************
consensus_7307#0 CCGAAGATATTGTAAATATGATTTTCAAGTACTTTTTGCACCTTTGTGTTTTAAATGTGG 355
consensus_7307#1 CCGA-GATATTGTAA-TATGATTTTCAA-------------------------------- 173
**** ********** ************
consensus_7307#0 TGAATTTATCATGTCAAAAGTGGTGAAAGCAATGAATCGAAGCTGGCATCCTGAATGTTT 415
consensus_7307#1 ------------------------------------------------------------
consensus_7307#0 AGTTTGTAATGAATGTGGTATTCAAATTATAAGCAAAGGATTTCAAAGACATAATACAAG 475
consensus_7307#1 ------------------------------------------------------------
consensus_7307#0 AATCCTGTGTAAAGATTGTTGGCCTGTTATATGTCAGGAATTAGTTGGCTGTCATATCTG 535
consensus_7307#1 ------------------------------------------------------------
consensus_7307#0 TCAAACATGTCATAAACCAATTGAATTAAATAAACACATCAAATTTATGGGTGATTTTCA 595
consensus_7307#1 ------------------------------------------------------------
consensus_7307#0 TCATCCACATCATTTTCATTGTTTTGATTGTGATCAAGAACTTGGTTTGGATGCACATGA 655
consensus_7307#1 ------------------------------------------------------------
consensus_7307#0 ACGTGGTGGTGAATTATATTGTCTTAAATGTTTCAGTCGTTCTGGTGTATCAATCTGCTC 715
consensus_7307#1 ------------------------------------------------------------
consensus_7307#0 AGCATGCAGACGTCCAATTGACGGTCGTATAGTTTGGGCACTTGGTAAAGTTTGGCATGT 775
consensus_7307#1 ------------------------------------------------------------
consensus_7307#0 TGAACATTNTGTATGTCATCACTGTGAAATACCATTTATGGGTAGTAGGGTTTATGAGTG 835
consensus_7307#1 ------------------------------------------------------------
consensus_7307#0 GCAAGGGCACGCCTACTGTCTACTACATTATCAATCTANAATTGGAAGTGTCTGTCATAT 895
consensus_7307#1 ------------------------------------------------------------
consensus_7307#0 ATGCGCGAAACCGGTTACTGATACATTGGTTAAATTTACTAATAAAATCTATTGCCCTGA 955
consensus_7307#1 ------------------------------------------------------------
consensus_7307#0 ACACTTTCTTTGTTCACTGTGTGATAGAAAATTAGATGAAAAATCCAAACTTTATGAAAT 1015
consensus_7307#1 ------------------------------------------------------------
consensus_7307#0 TGATTTAAAACCAGTTTGTAAAGAATGTTATGATAAGTTACCAATGCAATGGAAAAAAAT 1075
consensus_7307#1 ------------------------------------------------------------
consensus_7307#0 CCTGGCAAAAATTCATCGTTCAGATAGACAAAAATGGAGTAATTAATGATGATTTGTAAT 1135
consensus_7307#1 ------------------------------------------------------------
consensus_7307#0 ATTCATAGAAATATAACAAATCTACTTTTATATTTGTATACAATCATTTAGGGAAGCTAT 1195
consensus_7307#1 ------------------------------------------------------------
consensus_7307#0 TTCAAACAGTTGAACTATATTTTTTTTTAAAAAACAAAAACAAACAATCATTTTTATAAA 1255
consensus_7307#1 ------------------------------------------------------------
consensus_7307#0 CAAATTATATAAGCTACTTTTTAGTAATCTATTCAATGTTTCAACAAAATTTTATTTTCT 1315
consensus_7307#1 ------------------------------------------------------------
consensus_7307#0 ATAGTATTCTGTATTCAAATTGTATTCATAGTTTTCAATGTCATATACATATATTCTGAT 1375
consensus_7307#1 ------------------------------------------------------------
consensus_7307#0 TCATCTGTACTACAATTAAAGTAATCGATGAAAATCAAAAAAAAATGTGGAGCGGGC 1432
consensus_7307#1 ---------------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||