cluster # 7311

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Schistosoma mansoni
cluster # 7311 cluster # 7311 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7311#0 length = 1090 sequences # 4

consensus_7311#1 length = 437 sequences # 1

consensusID : consensus_7311#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1090
fasta sequence

                              [AGGGGTATAGTCCATCACTAAATATGTGCATCCCTGTTTGATACGGATCTAGAATACCGCCCGGATCCATCGCCTCATTTTATACAGTATCCTATACAGTTACAAATATTGCCAGTACGTGATCGCAAACTCCACGGTAACCATTTTGCGAGGCAGGGGTACCAATTACTACGAAGGAAACTTGTTGACGCACAGCTGAGCTATGTCAAGGC-ACACCACTTGGTTTAACAGCCAAATCAGAAGGTAGAAACGGATTATTGTACACTACTAGCTGGTTTAGTTGACGAGAAGGTAATATAGATGGTAAAGAGTCCAATTTATTATCATTCAAAATAAGCACAGAGAGACGATCTAATTTGTGCAGGAAAGCAACTGGGACACCTCTCAGTTTGTTATTTGAAAGGTTGACGTTCCTAAGGTTCGTAAGGACCCAAAAATCATCTGGCAACCAAGTTAAATTGTTGCTGCTCAAATCAATAAGTTCCAGGGTTTTAGTCAGTGGTGAGCTTTCGGAAATTGATGGCCATCTTGTGATGTGGTTTTTACATAAACACAAATGAGCCATATTGAGGTTTTGTACTTCTTGAGGAATTTTTTCCAGTAAATTATCACTCAAGTCAAGGAAGCGCAGACTGTATAGTTTG-AGAAGTCTTGTATCAAACTGACGCAACCTCAATCCTGCTGCAACTACTTCATGCAGAGATATACTGAAGCCTTGAGAAAAAGGATAGTCTTCTCGTTTTGTTATAACTAGCCGGCGATGACCTACTTTCCGAATTTCATTTGTAGCAGGCCTGTTGCTGAGGATTCCAATGGGTATTTTGTTACCTGATTTTATAAGGTTTAAAATTTTTACCAGCTTCATCAAATCCGAGAGTTCAGCCTGATGAATCATTATAAATTTAGGGGGGATTTTCAGACGGATCGTCAGGTTTCCTTCTTTAACATGCTTGGTGAATAGCCTTTCAATGTTTGCTGAGATTNTGAATTTCCGACACGTATTTGAGGAAGATTCAGTGATGAAAATAATGGCATCTCCATTTTCATCGCNAAGTGATAAGACACTTTGCTTAGNTTACATCTACTACGA]

[+] EMBL CD147499             [AGGGGTATAGTCCATCACTAAATATGTGCATCCCTGTTTGATACGGATCTAGAATACCGCCCGGATCCATCGCCTCATTTTATACAGTATCCTATACAGTTACAAATATTGCCAGTACGTGATCGCAAACTCCACGGTAACCATTTTGCGAGGCAGGGGTACCAATTACTACGAAGGAAACTTGTTGACGCACAGCTGAGCTATGTCAAGGCAACACCACTTGGTTTAACAGCCAAATCAGAAGGTAGAAACGGATTATTGTACACTACTAGCTGGTTTAGTTGACGAGAAGGTAATATAGATGGTAAAGAGTCCAATTTATTATCATTCAAAATAAGCACAGAGAGACGATCTAATTTGTGCAGGAAAGCAACTGGGACACCTCTCAGTTTGTTATTTGAAAGGTTGACGTTCCTAAGGTTCGTAAGGACCCAAAAATCATCTGGCAACCAAGTTAAATTGTTGCTGCTCCAATCAATAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CD194018             [                                                                                                                                                                                                 AGCTGAGCAATGTCAAGGC ACACCACTTTGTTTTACAGCCAAATCAGATGGTAGAAACGGATTATTGTACACTACTAGCTGGTTTAGTTGACGAGAAGGTAATATAGATGGTAAAGAGTCCAATTTATTATCATTCAAAATAAGCACAGAGAGACGATCTAATTTGTGCAGGAAAGCAACTGGGACACCTCTCAGTTTGTTATTCGAAAGGTTGACGTTCCTAAGGTTCGTAAGGACCCAAAAATCATCTGGCAACCAAGTTAAATTGTTGCTGCTCAAATCAATAAGTTCCAGGGTTCTAGTCAGTGGTGAGCTTTCGGAAATTGACGGCCATCTTGTGATGTGGTTTTTACATAAACACAAATGAGCCATATTGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CD153866             [                                                                                                                                                                                                                                                                                                                                                                                                                                      CGTAAGGACCCAAAAATCATCTGGCAACCAAGTTAAATTGTTGCTGCTCAAATCAATAAGTTCCAGGGTTTTAGTCAGTGGTGAGCTTTCGGAAATTGATGGCCATCTTGTGATGTGGTTTTTACATAAACACAAATGAGCCATATTGAGGTTTTGTACTTCTTGAGGAATTTTTTCCAGTAAATTATCACTCAAGTCAAGGAAGCGCAGACTGTATAGTTTG AGAAGTCTTGTATCAAACTGACGCAACCTCAATCCTGCTGCAACTACTTCATGCAGAGATATACTGAAGCCTTGAGAAAAAGGATAGTCTTCTCGTTTTGTTATAACTAGCCGGCGATGACCTACTTTCCGAATTTCATTTGTAGCAGGCCTGTTGCTGAGGATTCCAATGGGTATTTTGTTACCTGATTTTATAAGGTTTAAAATTTTTACCAGCTTCATCAAATCCGAGAGTTCAGCCTGATGAATCATTATAAATTTAGGGGGGATTTTCAGACGGATCGTCAGGTTTCCTTCTTTAACATGCTTGGTGAATAGCCTTTCAATGTTTGCTGAGATTNTGAATTTCCGACACGTATTTGAGGAAGATTCAGTGATGAAAATAATGGCATCTCCATTTTCATCGCNAAGTGATAAGACACTTTGCTTAGNTTACATCTACTACGA]
[-] EMBL CD077853             [                                                                                                                                                                                                                                                                                                                                                                                                                                                      TCATCTGGCAACCAAGTTAAATTGTTGCTGCTCAAATCAATAAGTTCCAGGGTTTTAGTCAGTGGTGAGCTTTCGGAAATTGATGGCCATCTTGTGATGTGGTTTTTACATAAACACAAATGAGCCATATTGAGGTTTTGTACTTCTTGAGGAATTTTTTCCAGTAAATTATCACTCAAGTCAAGGAAGCGCAGGCTGTATAGTTTGCAGAAGTCTTGTATCAAACTGACGCACCCTCAATCCTGCTGCAACTACTTCcctaggacc                                                                                                                                                                                                                                                                                                                                                                                                   ]




>consensus_7311#0
AGGGGTATAGTCCATCACTAAATATGTGCATCCCTGTTTGATACGGATCTAGAATACCGC
CCGGATCCATCGCCTCATTTTATACAGTATCCTATACAGTTACAAATATTGCCAGTACGT
GATCGCAAACTCCACGGTAACCATTTTGCGAGGCAGGGGTACCAATTACTACGAAGGAAA
CTTGTTGACGCACAGCTGAGCTATGTCAAGGCACACCACTTGGTTTAACAGCCAAATCAG
AAGGTAGAAACGGATTATTGTACACTACTAGCTGGTTTAGTTGACGAGAAGGTAATATAG
ATGGTAAAGAGTCCAATTTATTATCATTCAAAATAAGCACAGAGAGACGATCTAATTTGT
GCAGGAAAGCAACTGGGACACCTCTCAGTTTGTTATTTGAAAGGTTGACGTTCCTAAGGT
TCGTAAGGACCCAAAAATCATCTGGCAACCAAGTTAAATTGTTGCTGCTCAAATCAATAA
GTTCCAGGGTTTTAGTCAGTGGTGAGCTTTCGGAAATTGATGGCCATCTTGTGATGTGGT
TTTTACATAAACACAAATGAGCCATATTGAGGTTTTGTACTTCTTGAGGAATTTTTTCCA
GTAAATTATCACTCAAGTCAAGGAAGCGCAGACTGTATAGTTTGAGAAGTCTTGTATCAA
ACTGACGCAACCTCAATCCTGCTGCAACTACTTCATGCAGAGATATACTGAAGCCTTGAG
AAAAAGGATAGTCTTCTCGTTTTGTTATAACTAGCCGGCGATGACCTACTTTCCGAATTT
CATTTGTAGCAGGCCTGTTGCTGAGGATTCCAATGGGTATTTTGTTACCTGATTTTATAA
GGTTTAAAATTTTTACCAGCTTCATCAAATCCGAGAGTTCAGCCTGATGAATCATTATAA
ATTTAGGGGGGATTTTCAGACGGATCGTCAGGTTTCCTTCTTTAACATGCTTGGTGAATA
GCCTTTCAATGTTTGCTGAGATTNTGAATTTCCGACACGTATTTGAGGAAGATTCAGTGA
TGAAAATAATGGCATCTCCATTTTCATCGCNAAGTGATAAGACACTTTGCTTAGNTTACA
TCTACTACGA

consensusID : consensus_7311#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 437
fasta sequence

                              [GGGGGTTTTGTCGATCACAAGAAATGTTCATCCAGCTTTTATACGGCACAAGAATACGGTAAGGATTCACGCCACATCTTAAACGGCAACATAAACAAGTTCTAAATACTGCCATACGGATACGCAAATTCCAGGGTAAGATATTTTCGAGGCAGGGGTACCAATTACTACGAAGGAAACTTGTTGACGCACAGCTGAGCTATGTCAAGGCAACACCACTTGGTTTAACAGCCAAATCAGAAGGTAGAAACGGATTATTGTACACTACTAGCTGGTTTAGTTGACGAGAAGGTAATATAGATGGTAAAGAGTCCAATTTATTATCATTCAAAATAAGCACAGAGAGACGATCTAATTTGTGCAGGAAAGCAACTGGGACACCTCTCAGTTTGTTATTTGAAAGGTTGACGTTCCTAAGGTTCGTAAGGACCCAAAAA]

[+] EMBL CD147501             [GGGGGTTTTGTCGATCACAAGAAATGTTCATCCAGCTTTTATACGGCACAAGAATACGGTAAGGATTCACGCCACATCTTAAACGGCAACATAAACAAGTTCTAAATACTGCCATACGGATACGCAAATTCCAGGGTAAGATATTTTCGAGGCAGGGGTACCAATTACTACGAAGGAAACTTGTTGACGCACAGCTGAGCTATGTCAAGGCAACACCACTTGGTTTAACAGCCAAATCAGAAGGTAGAAACGGATTATTGTACACTACTAGCTGGTTTAGTTGACGAGAAGGTAATATAGATGGTAAAGAGTCCAATTTATTATCATTCAAAATAAGCACAGAGAGACGATCTAATTTGTGCAGGAAAGCAACTGGGACACCTCTCAGTTTGTTATTTGAAAGGTTGACGTTCCTAAGGTTCGTAAGGACCCAAAAA]




>consensus_7311#1
GGGGGTTTTGTCGATCACAAGAAATGTTCATCCAGCTTTTATACGGCACAAGAATACGGT
AAGGATTCACGCCACATCTTAAACGGCAACATAAACAAGTTCTAAATACTGCCATACGGA
TACGCAAATTCCAGGGTAAGATATTTTCGAGGCAGGGGTACCAATTACTACGAAGGAAAC
TTGTTGACGCACAGCTGAGCTATGTCAAGGCAACACCACTTGGTTTAACAGCCAAATCAG
AAGGTAGAAACGGATTATTGTACACTACTAGCTGGTTTAGTTGACGAGAAGGTAATATAG
ATGGTAAAGAGTCCAATTTATTATCATTCAAAATAAGCACAGAGAGACGATCTAATTTGT
GCAGGAAAGCAACTGGGACACCTCTCAGTTTGTTATTTGAAAGGTTGACGTTCCTAAGGT
TCGTAAGGACCCAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7311#0      AGGGGTATAGTCCATCACTAAATATGTGCATCCCTGTTTGATACGGATCTAGAATACCGC 60
consensus_7311#1      GGGGGTTTTGTCGATCACAAGAAATGTTCATCCAGCTTTTATACGGCACAAGAATACGGT 60
                       ***** * *** ***** * * **** *****   *** ******  * ******* * 

consensus_7311#0      CCGGATCCATCGCCTCATTTTATACAGTATCCTATACA-GTTACAAATATTGCCAGTACG 119
consensus_7311#1      AAGGATTCA-CGCCACATCTTAAACGGCAACATAAACAAGTTCTAAATACTGCCA-TACG 118
                        **** ** **** *** *** ** * * * ** *** ***  ***** ***** ****

consensus_7311#0      TGATCGCAAACTCCACGGTAACCATTTTGCGAGGCAGGGGTACCAATTACTACGAAGGAA 179
consensus_7311#1      GATACGCAAATTCCAGGGTAAGATATTTTCGAGGCAGGGGTACCAATTACTACGAAGGAA 178
                          ****** **** *****    *** *******************************

consensus_7311#0      ACTTGTTGACGCACAGCTGAGCTATGTCAAGGCA-CACCACTTGGTTTAACAGCCAAATC 238
consensus_7311#1      ACTTGTTGACGCACAGCTGAGCTATGTCAAGGCAACACCACTTGGTTTAACAGCCAAATC 238
                      ********************************** *************************

consensus_7311#0      AGAAGGTAGAAACGGATTATTGTACACTACTAGCTGGTTTAGTTGACGAGAAGGTAATAT 298
consensus_7311#1      AGAAGGTAGAAACGGATTATTGTACACTACTAGCTGGTTTAGTTGACGAGAAGGTAATAT 298
                      ************************************************************

consensus_7311#0      AGATGGTAAAGAGTCCAATTTATTATCATTCAAAATAAGCACAGAGAGACGATCTAATTT 358
consensus_7311#1      AGATGGTAAAGAGTCCAATTTATTATCATTCAAAATAAGCACAGAGAGACGATCTAATTT 358
                      ************************************************************

consensus_7311#0      GTGCAGGAAAGCAACTGGGACACCTCTCAGTTTGTTATTTGAAAGGTTGACGTTCCTAAG 418
consensus_7311#1      GTGCAGGAAAGCAACTGGGACACCTCTCAGTTTGTTATTTGAAAGGTTGACGTTCCTAAG 418
                      ************************************************************

consensus_7311#0      GTTCGTAAGGACCCAAAAATCATCTGGCAACCAAGTTAAATTGTTGCTGCTCAAATCAAT 478
consensus_7311#1      GTTCGTAAGGACCCAAAAA----------------------------------------- 437
                      *******************                                         

consensus_7311#0      AAGTTCCAGGGTTTTAGTCAGTGGTGAGCTTTCGGAAATTGATGGCCATCTTGTGATGTG 538
consensus_7311#1      ------------------------------------------------------------
                                                                                  

consensus_7311#0      GTTTTTACATAAACACAAATGAGCCATATTGAGGTTTTGTACTTCTTGAGGAATTTTTTC 598
consensus_7311#1      ------------------------------------------------------------
                                                                                  

consensus_7311#0      CAGTAAATTATCACTCAAGTCAAGGAAGCGCAGACTGTATAGTTTGAGAAGTCTTGTATC 658
consensus_7311#1      ------------------------------------------------------------
                                                                                  

consensus_7311#0      AAACTGACGCAACCTCAATCCTGCTGCAACTACTTCATGCAGAGATATACTGAAGCCTTG 718
consensus_7311#1      ------------------------------------------------------------
                                                                                  

consensus_7311#0      AGAAAAAGGATAGTCTTCTCGTTTTGTTATAACTAGCCGGCGATGACCTACTTTCCGAAT 778
consensus_7311#1      ------------------------------------------------------------
                                                                                  

consensus_7311#0      TTCATTTGTAGCAGGCCTGTTGCTGAGGATTCCAATGGGTATTTTGTTACCTGATTTTAT 838
consensus_7311#1      ------------------------------------------------------------
                                                                                  

consensus_7311#0      AAGGTTTAAAATTTTTACCAGCTTCATCAAATCCGAGAGTTCAGCCTGATGAATCATTAT 898
consensus_7311#1      ------------------------------------------------------------
                                                                                  

consensus_7311#0      AAATTTAGGGGGGATTTTCAGACGGATCGTCAGGTTTCCTTCTTTAACATGCTTGGTGAA 958
consensus_7311#1      ------------------------------------------------------------
                                                                                  

consensus_7311#0      TAGCCTTTCAATGTTTGCTGAGATTNTGAATTTCCGACACGTATTTGAGGAAGATTCAGT 1018
consensus_7311#1      ------------------------------------------------------------
                                                                                  

consensus_7311#0      GATGAAAATAATGGCATCTCCATTTTCATCGCNAAGTGATAAGACACTTTGCTTAGNTTA 1078
consensus_7311#1      ------------------------------------------------------------
                                                                                  

consensus_7311#0      CATCTACTACGA 1090
consensus_7311#1      ------------