cluster # 7320

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Schistosoma mansoni
cluster # 7320 cluster # 7320 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7320#0 length = 521 sequences # 4

consensus_7320#1 length = 242 sequences # 1

consensusID : consensus_7320#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 521
fasta sequence

                              [TGTGTGTATATATGTGTAAAAGTGGCACAGCAAAATATTTTACATAGAACAAAATTGTAACAATTATATGAAGATAGATAAATACATGTACGTGCCTCTGTGTATATAGAGAGGAATAGATGATGAAAGGGGAAAATGGGGCCGAGGTAATGCAGATAGAAAGCAAACGTACAAAATCTTCCATGAGACAGATAGGTAGACTAACCAGTAATCATAATAATAATAATAAACACTAAATTGTAAGTAGTATTATTGGTAATAAAACAAATTTGATAACTAATGATATTATTAGTCATAGTAAAGGTTCATTTCTCCCTGAGATGGCGATAATAATAATAAGAATAATAATAACAAGATTACACCTTAGTGATATTGAAAAAATAAGGGAACCTATTTATTGAAATATGGATTGACACGTGTACAAAATCACATACACATGCGCACACGCTTAGATTGAATGACATGAACTAATCAAAATTAAAATAGCATGCAACACAGAATGAAATATTCAACAAAGATGA]

[+] EMBL CD157619             [TGTGTGTATATATGTGTAAAAGTGGCACAGCAAAATATTTTACATAGAACAAAATTGTAACAATTATATGAAGATAGATAAATACATGTACGTGCCTCT                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD157637             [                                       TTACATAGAACAAAATTGTCACAATTATATGAAGATAGATAAATACATGTACGTGCCTCTGTGTATATAGAGAGGAATAGATGATGAAAGGGGAAAATGGGGCCGAGGTAATGCAGATAGAAAGCAAACGTACAAAATCTTCCATGAGACAGATAGGTAGACTAACCAGTAATCATAATAATAATAATAAACACTAAATTGTAAGTAGTATTATTGGTAATAAAACAAATTTGATAACTAAT                                                                                                                                                                                                                                                ]
[+] EMBL CD157672             [                                                                                        TACGTGCCTCTGTGTATATAGAGAGGAATAGATGATGAAAGGGGAAAATGGGGCCGAGGTAATGCAGATAGAAAGC AACGTACAAAATCTTCCATGAGACAGATAGGTAGACTAA                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CD133975             [                                                                                                         ATAGAGAGGAATAGATGATGAAAGGGGAAAATGGGGCCGAGGTAATGCAGATAGAAAGCAAACGTACAAAATCTTCCATGAGACAGATAGGTAGACTAACCAGTAATCATAATAATAATAATAAACACTAAGTTGTAAGTAGTATTATTGGTAATAAAACAAATTTGATAACTAATGATATTATTAGTCATAGTAAAGGTTCATTTCTCCCTGAGATGGCGATAATAATAATAAGAATAATAATAACAAGATTACACCTTAGTGATATTGAAAAAATAAGGGAACCTATTTATTGAAATATGGATTGACACGTGTACAAAATCACATACACATGCGCACACGCTTAGATTGAATGACATGAACTAATCAAAATTAAAATAGCATGCAACACAGAATGAAATATTCAACAAAGATGA]




>consensus_7320#0
TGTGTGTATATATGTGTAAAAGTGGCACAGCAAAATATTTTACATAGAACAAAATTGTAA
CAATTATATGAAGATAGATAAATACATGTACGTGCCTCTGTGTATATAGAGAGGAATAGA
TGATGAAAGGGGAAAATGGGGCCGAGGTAATGCAGATAGAAAGCAAACGTACAAAATCTT
CCATGAGACAGATAGGTAGACTAACCAGTAATCATAATAATAATAATAAACACTAAATTG
TAAGTAGTATTATTGGTAATAAAACAAATTTGATAACTAATGATATTATTAGTCATAGTA
AAGGTTCATTTCTCCCTGAGATGGCGATAATAATAATAAGAATAATAATAACAAGATTAC
ACCTTAGTGATATTGAAAAAATAAGGGAACCTATTTATTGAAATATGGATTGACACGTGT
ACAAAATCACATACACATGCGCACACGCTTAGATTGAATGACATGAACTAATCAAAATTA
AAATAGCATGCAACACAGAATGAAATATTCAACAAAGATGA

consensusID : consensus_7320#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 242
fasta sequence

                              [CNCTAAATGTAAAGTAGTATTATTGGTAATAAACCAAATTTGATAACTAATGATATTATTAGTCATAGTAAAGGTTCATTTCTCCCTGAGATGGCGATAATAATAATAAGAATAATAATAACAAGATTACACCTTAGTGATATTAGTAGTATTAGTAGTAGTATTTAGGCATGAATCTAATCTGCTGATGTTATTATTGACTATTGGAATTGGAGATTGTCAGCCACTCGGCAGCGTATGAC]

[-] EMBL CD157642             [CNCTAAATGTAAAGTAGTATTATTGGTAATAAACCAAATTTGATAACTAATGATATTATTAGTCATAGTAAAGGTTCATTTCTCCCTGAGATGGCGATAATAATAATAAGAATAATAATAACAAGATTACACCTTAGTGATATTAGTAGTATTAGTAGTAGTATTTAGGCATGAATCTAATCTGCTGATGTTATTATTGACTATTGGAATTGGAGATTGTCAGCCACTCGGCAGCGTATGAC]




>consensus_7320#1
CNCTAAATGTAAAGTAGTATTATTGGTAATAAACCAAATTTGATAACTAATGATATTATT
AGTCATAGTAAAGGTTCATTTCTCCCTGAGATGGCGATAATAATAATAAGAATAATAATA
ACAAGATTACACCTTAGTGATATTAGTAGTATTAGTAGTAGTATTTAGGCATGAATCTAA
TCTGCTGATGTTATTATTGACTATTGGAATTGGAGATTGTCAGCCACTCGGCAGCGTATG
AC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7320#0      TGTGTGTATATATGTGTAAAAGTGGCACAGCAAAATATTTTACATAGAACAAAATTGTAA 60
consensus_7320#1      ------------------------------------------------------------
                                                                                  

consensus_7320#0      CAATTATATGAAGATAGATAAATACATGTACGTGCCTCTGTGTATATAGAGAGGAATAGA 120
consensus_7320#1      ------------------------------------------------------------
                                                                                  

consensus_7320#0      TGATGAAAGGGGAAAATGGGGCCGAGGTAATGCAGATAGAAAGCAAACGTACAAAATCTT 180
consensus_7320#1      ------------------------------------------------------------
                                                                                  

consensus_7320#0      CCATGAGACAGATAGGTAGACTAACCAGTAATCATAATAATAATAATAAACACTAAATTG 240
consensus_7320#1      --------------------------------------------------CNCTAAATGT 10
                                                                        * ******  

consensus_7320#0      TAAGTAGTATTATTGGTAATAAAACAAATTTGATAACTAATGATATTATTAGTCATAGTA 300
consensus_7320#1      AAAGTAGTATTATTGGTAATAAACCAAATTTGATAACTAATGATATTATTAGTCATAGTA 70
                       ********************** ************************************

consensus_7320#0      AAGGTTCATTTCTCCCTGAGATGGCGATAATAATAATAAGAATAATAATAACAAGATTAC 360
consensus_7320#1      AAGGTTCATTTCTCCCTGAGATGGCGATAATAATAATAAGAATAATAATAACAAGATTAC 130
                      ************************************************************

consensus_7320#0      ACCTTAGTGATATTGAAAAAATAAGGGAACCTATTTATTGAAATATGGATTGACACGTGT 420
consensus_7320#1      ACCTTAGTGATATTAGTAGTATTAGTAGTAGTATTTA----GGCATGAATCTA-ATCTGC 185
                      **************   *  ** **      ******       *** **  * *  ** 

consensus_7320#0      ACAAAATCACATACACATGCGCACACGCTTAGATTGAATGACATGAACTAATCAAAATTA 480
consensus_7320#1      TGATGTTATTATTGAC---------TATTGGAATTGGAGATTGTCAGCCACTCGG----- 231
                        *   *   **  **            *   **** *     * * * * **       

consensus_7320#0      AAATAGCATGCAACACAGAATGAAATATTCAACAAAGATGA 521
consensus_7320#1      ---CAGCGTATGAC--------------------------- 242
                          *** *   **