These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7324#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1324 fasta sequence [GAAACTTAAATGGGGTTTCCGTCGTTGTGAAGATATTTGTTGGATCAAAACAAACATCAATAATCCAAGACATGAAGCTCTTGAACCGAATTGTGTTTTTCAACGCACAAAAGAACATTGCTTAATGGGTATACACGGAACTGTTAGACGTTCCACTGATGGGGATTTCATTCATGCTAATATAGACATTGATCTGATTATTGAAGAGGCTCCTCCACAAGGCAGTTATGCTGCTAAAGATAAACCAACCGAAATATTTCACATTATTGAACATTTTTGTCTTGGAAGACGAAGATTACATTTATTCGGTAGAGATAGTACATTAAGACCTGGTTGGGTGACAGTAGGTAATGAACTTTCCGCATCGAATTATGACCCACGTATATATGCTAACAATTTTAATAAAGATCCTAATGGATTGTTGCTGGGAACAACTGAAGAAATTGAACGATTACGGCCGAAATCTCCACCACCACGTCATACGAACCCGAATACTGCAACAGGTGCTCCCAACACAATTTCTTCACTTTCGGAAGTTATATCTGGTCCTGTTTGTCCTAATCCTGCTTTGCCTACTGGACATATACCTCATTCAATAGCTCCGACATGTTCAGTTAGCAATTCTGTTGTATCGAATATCAGTTCCATTCCTGGCATTTCTGGCCATCCTATACGGAGATTTAATGCTACAAATGTGATTAAACCTCTCAACTCTATTGGGTCATTAACTAATTCTTCACTTTTGGGCTTACCATCAGTTTTACAAAGTGTAACTAATCGAATAGGTCCCAATACGAGGCTTAATACACGAACACCGATTAATCCATTGTCAACTTCTAATTCTCCACGAGCACTCGCTGCATTGCAGGCTGCCGCAGCTGCTCATCAAAACTCTATTCATCATTCACATGATTCTCCTCTATGGTCAACTCCAAATAATTTTGCCGTTGCTTTAGCTGCTGCAGCAGCAACTCATAATTTACCTCTTGCCTCGGCATTGAATTCTTTAAATTCAAGGACTCCAATTTCTGATTCGCATTTACTTACTGGACTTACTAACGCTGGTAAATTGAACCCAACTCTGCTAGCAATGTTGAATTCTTCAAATCCTGTTGGACCAGTAGGGCTATCATTACTGAGTAGTATTATTAGAAGTAACGTTTCTGGAAAGCATCCTAATAATCCATGGCATTGAATCTTGAATAACATTACTCTTTTTTTAGTTATGTATAATTATTTTGATGTTAACTGCTATATTTTCATTTATATCCCAATCAAATAACAAGAAACAGTGAAAAATATTTCTCTACCATCGAATACTACA] [+] EMBL CD082315 [GAAACTTAAATGGGGTTTCCGTCGTTGTGAAGATATTTGTTGGATCAAAACAAACATCAATAATCCAAGACATGAAGCTCTTGAACCGAATTGTGTTTTTCAACGCACAAAAGAACATTGCTTAATGGGTATACACGGAACTGTTAGACGTTCCACTGATGGGGATTTCATTCATGCTAATATAGACATTGATCTGATTATTGAAGAGGCTCCTCCACAAGGCAGTTATGCTGCTAAAGATAAACCAACCGAAATATTTCACATTATTGAACATTTTTGTCTTGGAAGACGAAGATTACATTTATTCGGTAGAGATAGTACATTAAGACCTGGTTGGGTGACAGTAGGTAATGAACTTTCCGCATCGAATTATGACCCACGTATATATGCTAACAATTTTAATAAAGATCCTAATGGATTGTTGCTGGGAACAACTGAAGAAATTGAACGATTACGGCCGAAATCTCCACCACCACGTCATACGAACCCGAATACTGCAACAGGTGCTCCCAACACAATTTCTTCACTTTCGGAAGTTATATCTGGTCCTGTTTGTCCTAATCCTGCTTTGCCTACTGGACATATACCTCATTCAATAGCTCCGACATGTTCAGTTAGCAATTCTGTTGTATCGAATATCAGTTCCATTCCTGGCATTT ] [-] EMBL CD184790 [ CTCCACAAGGCAGTTATGCTGCTAAAGATAAACCAACCGAAATATTTCACATTATTGAACATTTTTGTCTTGGAAGACGAAGATTACATTTATTCGGTAGAGATAGTACATTAAGACCTGGTTGGGTGACAGTAGGTAATGAACTTTCCGCATCGAATTATGACCCACGTATATATGCTAACAATTTTAATAAAGATCCTAATGGATTGTTGCTGGGAACAACTGAAGAAATTGAACGATTACGGCCGAAATCTCCACCCCCACGTCATACGAACCCGAATACTGCAACAGGTGCTCCCAACACAATTTCTTCACTTTCGGAAGTTATATCTGGTCCTGTTTGTCCTAATCCTGCTTTGCCTACTGGACATATACCTC ] [+] EMBL SMAA85209 [ TCTTCACTTTCGGAAGTTATATCTGGTCCTGTTTGTCCTAATCCTGCTTTGCCTACTGGACATATACCTCATTCAATAGCTCCGACATGTTCAGTTAGCAATTCTGTTGTATCGAATATCAGTTCCATTCCTGGCATTTCTGGCCATCCTATACGGAGATTTAATGCTACAAATGTGATTAAACCTCTCAACTCTATTGGGTCATTAACTAATTCTTCACTTTTGGGCTTACCATCAGTTTTACAAAGTGTAACTAATCGAATAGGTCCCAATACGAGGCTTAATACACGAACACCGATTAATCCATTGTCAACTTCTAATTCTCCACGAGCACTCGCTGCATTGCAGGCTGCCGCAGCTGCTCATCAAAACTCTATTCATCATTCACATGATTCTCCTCTATGGTCAACTCCAAATAATTTTGCCGTTGCTTTAGCTGCTGCAGCAGCAACTCATAATTTACCTCTTG ] [-] EMBL CD075917 [ TTTGGGCTTACCATCAGTTTTACAAAGTGTAACTAATCGAATAGGTCCCAATACGAGGCTTAATACACGAACACCGATTAATCCATTGTCAACTTCTAATTCTCCACGAGCACTCGCTGCATTGCAGGCTGCCGCAGCTGCTCATCAAAACTCTATTCATCATTCACATGATTCTCCTCTATGGTCAACTCCAAATAATTTTGCCGTTGCTTTAGCTGCTGCAGCAGCAACTCATAATTTACCTCTTGCCTCGGCATTGAATTCTTTAAATTCAAGGACTCCAATTTCTGATTCGCATTTACTTACTGGACTTACTAACGCTGGTAAATTGAACCCAACTCTGCTAGCAATGTTGAATTCTTCAAATCCTGTTGGACCAGTAGGGCTATCATTACTGAGTAGTATTATTAGAAGTAACGTTTCTGGAAAGCATCCTAATAATCCATGGCATTGAATCTTGAATAACATTACTCTTTTTTTAGTTATGTATAATTATTTTGATGTTAACTGCTATATTTTCATTTATATCCCAATCAAATAACAAGAAACAGTGAAAAATATTTCTCTACCATCGAATACTACA] consensusID : consensus_7324#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 343 fasta sequence [GCAGGCCAGAATTCGGTCCGAGGGCACAAAAGAACATTGCTTAATGGGTATACACGGAACTGTTAGACGTTCCACTGATGGGGATTTCATTCATGCTAATATAGACATTGATCTGATTATTGAAGAGGCTCCTCCACAAGGCAGTTATGCTGCTAAAGATAAACCAACCGAAATATTTCACATTATTGAACATTTTTGTCTTGGAAGACGAAGATTACATTTATTCGGTAGAGATAGTACATTAAGACCTGGTTGGGTGACAGTAGGTAATGAACTTTCCGCATCGAATTATGACCCACGTATATATGCTAACAATNNTAATAAAGATCCTAATGGATTNGTG] [+] EMBL CD077694 [GCAGGCCAGAATTCGGTCCGAGGGCACAAAAGAACATTGCTTAATGGGTATACACGGAACTGTTAGACGTTCCACTGATGGGGATTTCATTCATGCTAATATAGACATTGATCTGATTATTGAAGAGGCTCCTCCACAAGGCAGTTATGCTGCTAAAGATAAACCAACCGAAATATTTCACATTATTGAACATTTTTGTCTTGGAAGACGAAGATTACATTTATTCGGTAGAGATAGTACATTAAGACCTGGTTGGGTGACAGTAGGTAATGAACTTTCCGCATCGAATTATGACCCACGTATATATGCTAACAATNNTAATAAAGATCCTAATGGATTNGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7324#0 GAAACTTAAATGGGGTTTCCGTCGTTGTGAAGATATTTGTTGGATCAAAACAAACATCAA 60 consensus_7324#1 ------------------------------------------------------------ consensus_7324#0 TAATCCAAGACATGAAGCTCTTGAACCGAATTGTGTTTTTCAACGCACAAAAGAACATTG 120 consensus_7324#1 -------------------GCAGGCCAGAATTCGGTCCG--AGGGCACAAAAGAACATTG 39 * * ***** ** * **************** consensus_7324#0 CTTAATGGGTATACACGGAACTGTTAGACGTTCCACTGATGGGGATTTCATTCATGCTAA 180 consensus_7324#1 CTTAATGGGTATACACGGAACTGTTAGACGTTCCACTGATGGGGATTTCATTCATGCTAA 99 ************************************************************ consensus_7324#0 TATAGACATTGATCTGATTATTGAAGAGGCTCCTCCACAAGGCAGTTATGCTGCTAAAGA 240 consensus_7324#1 TATAGACATTGATCTGATTATTGAAGAGGCTCCTCCACAAGGCAGTTATGCTGCTAAAGA 159 ************************************************************ consensus_7324#0 TAAACCAACCGAAATATTTCACATTATTGAACATTTTTGTCTTGGAAGACGAAGATTACA 300 consensus_7324#1 TAAACCAACCGAAATATTTCACATTATTGAACATTTTTGTCTTGGAAGACGAAGATTACA 219 ************************************************************ consensus_7324#0 TTTATTCGGTAGAGATAGTACATTAAGACCTGGTTGGGTGACAGTAGGTAATGAACTTTC 360 consensus_7324#1 TTTATTCGGTAGAGATAGTACATTAAGACCTGGTTGGGTGACAGTAGGTAATGAACTTTC 279 ************************************************************ consensus_7324#0 CGCATCGAATTATGACCCACGTATATATGCTAACAATTTTAATAAAGATCCTAATGGATT 420 consensus_7324#1 CGCATCGAATTATGACCCACGTATATATGCTAACAATNNTAATAAAGATCCTAATGGATT 339 ************************************* ********************* consensus_7324#0 GTTGCTGGGAACAACTGAAGAAATTGAACGATTACGGCCGAAATCTCCACCACCACGTCA 480 consensus_7324#1 NGTG-------------------------------------------------------- 343 ** consensus_7324#0 TACGAACCCGAATACTGCAACAGGTGCTCCCAACACAATTTCTTCACTTTCGGAAGTTAT 540 consensus_7324#1 ------------------------------------------------------------ consensus_7324#0 ATCTGGTCCTGTTTGTCCTAATCCTGCTTTGCCTACTGGACATATACCTCATTCAATAGC 600 consensus_7324#1 ------------------------------------------------------------ consensus_7324#0 TCCGACATGTTCAGTTAGCAATTCTGTTGTATCGAATATCAGTTCCATTCCTGGCATTTC 660 consensus_7324#1 ------------------------------------------------------------ consensus_7324#0 TGGCCATCCTATACGGAGATTTAATGCTACAAATGTGATTAAACCTCTCAACTCTATTGG 720 consensus_7324#1 ------------------------------------------------------------ consensus_7324#0 GTCATTAACTAATTCTTCACTTTTGGGCTTACCATCAGTTTTACAAAGTGTAACTAATCG 780 consensus_7324#1 ------------------------------------------------------------ consensus_7324#0 AATAGGTCCCAATACGAGGCTTAATACACGAACACCGATTAATCCATTGTCAACTTCTAA 840 consensus_7324#1 ------------------------------------------------------------ consensus_7324#0 TTCTCCACGAGCACTCGCTGCATTGCAGGCTGCCGCAGCTGCTCATCAAAACTCTATTCA 900 consensus_7324#1 ------------------------------------------------------------ consensus_7324#0 TCATTCACATGATTCTCCTCTATGGTCAACTCCAAATAATTTTGCCGTTGCTTTAGCTGC 960 consensus_7324#1 ------------------------------------------------------------ consensus_7324#0 TGCAGCAGCAACTCATAATTTACCTCTTGCCTCGGCATTGAATTCTTTAAATTCAAGGAC 1020 consensus_7324#1 ------------------------------------------------------------ consensus_7324#0 TCCAATTTCTGATTCGCATTTACTTACTGGACTTACTAACGCTGGTAAATTGAACCCAAC 1080 consensus_7324#1 ------------------------------------------------------------ consensus_7324#0 TCTGCTAGCAATGTTGAATTCTTCAAATCCTGTTGGACCAGTAGGGCTATCATTACTGAG 1140 consensus_7324#1 ------------------------------------------------------------ consensus_7324#0 TAGTATTATTAGAAGTAACGTTTCTGGAAAGCATCCTAATAATCCATGGCATTGAATCTT 1200 consensus_7324#1 ------------------------------------------------------------ consensus_7324#0 GAATAACATTACTCTTTTTTTAGTTATGTATAATTATTTTGATGTTAACTGCTATATTTT 1260 consensus_7324#1 ------------------------------------------------------------ consensus_7324#0 CATTTATATCCCAATCAAATAACAAGAAACAGTGAAAAATATTTCTCTACCATCGAATAC 1320 consensus_7324#1 ------------------------------------------------------------ consensus_7324#0 TACA 1324 consensus_7324#1 ---- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||