|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7324#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1324 fasta sequence
[GAAACTTAAATGGGGTTTCCGTCGTTGTGAAGATATTTGTTGGATCAAAACAAACATCAATAATCCAAGACATGAAGCTCTTGAACCGAATTGTGTTTTTCAACGCACAAAAGAACATTGCTTAATGGGTATACACGGAACTGTTAGACGTTCCACTGATGGGGATTTCATTCATGCTAATATAGACATTGATCTGATTATTGAAGAGGCTCCTCCACAAGGCAGTTATGCTGCTAAAGATAAACCAACCGAAATATTTCACATTATTGAACATTTTTGTCTTGGAAGACGAAGATTACATTTATTCGGTAGAGATAGTACATTAAGACCTGGTTGGGTGACAGTAGGTAATGAACTTTCCGCATCGAATTATGACCCACGTATATATGCTAACAATTTTAATAAAGATCCTAATGGATTGTTGCTGGGAACAACTGAAGAAATTGAACGATTACGGCCGAAATCTCCACCACCACGTCATACGAACCCGAATACTGCAACAGGTGCTCCCAACACAATTTCTTCACTTTCGGAAGTTATATCTGGTCCTGTTTGTCCTAATCCTGCTTTGCCTACTGGACATATACCTCATTCAATAGCTCCGACATGTTCAGTTAGCAATTCTGTTGTATCGAATATCAGTTCCATTCCTGGCATTTCTGGCCATCCTATACGGAGATTTAATGCTACAAATGTGATTAAACCTCTCAACTCTATTGGGTCATTAACTAATTCTTCACTTTTGGGCTTACCATCAGTTTTACAAAGTGTAACTAATCGAATAGGTCCCAATACGAGGCTTAATACACGAACACCGATTAATCCATTGTCAACTTCTAATTCTCCACGAGCACTCGCTGCATTGCAGGCTGCCGCAGCTGCTCATCAAAACTCTATTCATCATTCACATGATTCTCCTCTATGGTCAACTCCAAATAATTTTGCCGTTGCTTTAGCTGCTGCAGCAGCAACTCATAATTTACCTCTTGCCTCGGCATTGAATTCTTTAAATTCAAGGACTCCAATTTCTGATTCGCATTTACTTACTGGACTTACTAACGCTGGTAAATTGAACCCAACTCTGCTAGCAATGTTGAATTCTTCAAATCCTGTTGGACCAGTAGGGCTATCATTACTGAGTAGTATTATTAGAAGTAACGTTTCTGGAAAGCATCCTAATAATCCATGGCATTGAATCTTGAATAACATTACTCTTTTTTTAGTTATGTATAATTATTTTGATGTTAACTGCTATATTTTCATTTATATCCCAATCAAATAACAAGAAACAGTGAAAAATATTTCTCTACCATCGAATACTACA]
[+] EMBL CD082315 [GAAACTTAAATGGGGTTTCCGTCGTTGTGAAGATATTTGTTGGATCAAAACAAACATCAATAATCCAAGACATGAAGCTCTTGAACCGAATTGTGTTTTTCAACGCACAAAAGAACATTGCTTAATGGGTATACACGGAACTGTTAGACGTTCCACTGATGGGGATTTCATTCATGCTAATATAGACATTGATCTGATTATTGAAGAGGCTCCTCCACAAGGCAGTTATGCTGCTAAAGATAAACCAACCGAAATATTTCACATTATTGAACATTTTTGTCTTGGAAGACGAAGATTACATTTATTCGGTAGAGATAGTACATTAAGACCTGGTTGGGTGACAGTAGGTAATGAACTTTCCGCATCGAATTATGACCCACGTATATATGCTAACAATTTTAATAAAGATCCTAATGGATTGTTGCTGGGAACAACTGAAGAAATTGAACGATTACGGCCGAAATCTCCACCACCACGTCATACGAACCCGAATACTGCAACAGGTGCTCCCAACACAATTTCTTCACTTTCGGAAGTTATATCTGGTCCTGTTTGTCCTAATCCTGCTTTGCCTACTGGACATATACCTCATTCAATAGCTCCGACATGTTCAGTTAGCAATTCTGTTGTATCGAATATCAGTTCCATTCCTGGCATTT ]
[-] EMBL CD184790 [ CTCCACAAGGCAGTTATGCTGCTAAAGATAAACCAACCGAAATATTTCACATTATTGAACATTTTTGTCTTGGAAGACGAAGATTACATTTATTCGGTAGAGATAGTACATTAAGACCTGGTTGGGTGACAGTAGGTAATGAACTTTCCGCATCGAATTATGACCCACGTATATATGCTAACAATTTTAATAAAGATCCTAATGGATTGTTGCTGGGAACAACTGAAGAAATTGAACGATTACGGCCGAAATCTCCACCCCCACGTCATACGAACCCGAATACTGCAACAGGTGCTCCCAACACAATTTCTTCACTTTCGGAAGTTATATCTGGTCCTGTTTGTCCTAATCCTGCTTTGCCTACTGGACATATACCTC ]
[+] EMBL SMAA85209 [ TCTTCACTTTCGGAAGTTATATCTGGTCCTGTTTGTCCTAATCCTGCTTTGCCTACTGGACATATACCTCATTCAATAGCTCCGACATGTTCAGTTAGCAATTCTGTTGTATCGAATATCAGTTCCATTCCTGGCATTTCTGGCCATCCTATACGGAGATTTAATGCTACAAATGTGATTAAACCTCTCAACTCTATTGGGTCATTAACTAATTCTTCACTTTTGGGCTTACCATCAGTTTTACAAAGTGTAACTAATCGAATAGGTCCCAATACGAGGCTTAATACACGAACACCGATTAATCCATTGTCAACTTCTAATTCTCCACGAGCACTCGCTGCATTGCAGGCTGCCGCAGCTGCTCATCAAAACTCTATTCATCATTCACATGATTCTCCTCTATGGTCAACTCCAAATAATTTTGCCGTTGCTTTAGCTGCTGCAGCAGCAACTCATAATTTACCTCTTG ]
[-] EMBL CD075917 [ TTTGGGCTTACCATCAGTTTTACAAAGTGTAACTAATCGAATAGGTCCCAATACGAGGCTTAATACACGAACACCGATTAATCCATTGTCAACTTCTAATTCTCCACGAGCACTCGCTGCATTGCAGGCTGCCGCAGCTGCTCATCAAAACTCTATTCATCATTCACATGATTCTCCTCTATGGTCAACTCCAAATAATTTTGCCGTTGCTTTAGCTGCTGCAGCAGCAACTCATAATTTACCTCTTGCCTCGGCATTGAATTCTTTAAATTCAAGGACTCCAATTTCTGATTCGCATTTACTTACTGGACTTACTAACGCTGGTAAATTGAACCCAACTCTGCTAGCAATGTTGAATTCTTCAAATCCTGTTGGACCAGTAGGGCTATCATTACTGAGTAGTATTATTAGAAGTAACGTTTCTGGAAAGCATCCTAATAATCCATGGCATTGAATCTTGAATAACATTACTCTTTTTTTAGTTATGTATAATTATTTTGATGTTAACTGCTATATTTTCATTTATATCCCAATCAAATAACAAGAAACAGTGAAAAATATTTCTCTACCATCGAATACTACA]
consensusID : consensus_7324#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 343 fasta sequence
[GCAGGCCAGAATTCGGTCCGAGGGCACAAAAGAACATTGCTTAATGGGTATACACGGAACTGTTAGACGTTCCACTGATGGGGATTTCATTCATGCTAATATAGACATTGATCTGATTATTGAAGAGGCTCCTCCACAAGGCAGTTATGCTGCTAAAGATAAACCAACCGAAATATTTCACATTATTGAACATTTTTGTCTTGGAAGACGAAGATTACATTTATTCGGTAGAGATAGTACATTAAGACCTGGTTGGGTGACAGTAGGTAATGAACTTTCCGCATCGAATTATGACCCACGTATATATGCTAACAATNNTAATAAAGATCCTAATGGATTNGTG]
[+] EMBL CD077694 [GCAGGCCAGAATTCGGTCCGAGGGCACAAAAGAACATTGCTTAATGGGTATACACGGAACTGTTAGACGTTCCACTGATGGGGATTTCATTCATGCTAATATAGACATTGATCTGATTATTGAAGAGGCTCCTCCACAAGGCAGTTATGCTGCTAAAGATAAACCAACCGAAATATTTCACATTATTGAACATTTTTGTCTTGGAAGACGAAGATTACATTTATTCGGTAGAGATAGTACATTAAGACCTGGTTGGGTGACAGTAGGTAATGAACTTTCCGCATCGAATTATGACCCACGTATATATGCTAACAATNNTAATAAAGATCCTAATGGATTNGTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7324#0 GAAACTTAAATGGGGTTTCCGTCGTTGTGAAGATATTTGTTGGATCAAAACAAACATCAA 60
consensus_7324#1 ------------------------------------------------------------
consensus_7324#0 TAATCCAAGACATGAAGCTCTTGAACCGAATTGTGTTTTTCAACGCACAAAAGAACATTG 120
consensus_7324#1 -------------------GCAGGCCAGAATTCGGTCCG--AGGGCACAAAAGAACATTG 39
* * ***** ** * ****************
consensus_7324#0 CTTAATGGGTATACACGGAACTGTTAGACGTTCCACTGATGGGGATTTCATTCATGCTAA 180
consensus_7324#1 CTTAATGGGTATACACGGAACTGTTAGACGTTCCACTGATGGGGATTTCATTCATGCTAA 99
************************************************************
consensus_7324#0 TATAGACATTGATCTGATTATTGAAGAGGCTCCTCCACAAGGCAGTTATGCTGCTAAAGA 240
consensus_7324#1 TATAGACATTGATCTGATTATTGAAGAGGCTCCTCCACAAGGCAGTTATGCTGCTAAAGA 159
************************************************************
consensus_7324#0 TAAACCAACCGAAATATTTCACATTATTGAACATTTTTGTCTTGGAAGACGAAGATTACA 300
consensus_7324#1 TAAACCAACCGAAATATTTCACATTATTGAACATTTTTGTCTTGGAAGACGAAGATTACA 219
************************************************************
consensus_7324#0 TTTATTCGGTAGAGATAGTACATTAAGACCTGGTTGGGTGACAGTAGGTAATGAACTTTC 360
consensus_7324#1 TTTATTCGGTAGAGATAGTACATTAAGACCTGGTTGGGTGACAGTAGGTAATGAACTTTC 279
************************************************************
consensus_7324#0 CGCATCGAATTATGACCCACGTATATATGCTAACAATTTTAATAAAGATCCTAATGGATT 420
consensus_7324#1 CGCATCGAATTATGACCCACGTATATATGCTAACAATNNTAATAAAGATCCTAATGGATT 339
************************************* *********************
consensus_7324#0 GTTGCTGGGAACAACTGAAGAAATTGAACGATTACGGCCGAAATCTCCACCACCACGTCA 480
consensus_7324#1 NGTG-------------------------------------------------------- 343
**
consensus_7324#0 TACGAACCCGAATACTGCAACAGGTGCTCCCAACACAATTTCTTCACTTTCGGAAGTTAT 540
consensus_7324#1 ------------------------------------------------------------
consensus_7324#0 ATCTGGTCCTGTTTGTCCTAATCCTGCTTTGCCTACTGGACATATACCTCATTCAATAGC 600
consensus_7324#1 ------------------------------------------------------------
consensus_7324#0 TCCGACATGTTCAGTTAGCAATTCTGTTGTATCGAATATCAGTTCCATTCCTGGCATTTC 660
consensus_7324#1 ------------------------------------------------------------
consensus_7324#0 TGGCCATCCTATACGGAGATTTAATGCTACAAATGTGATTAAACCTCTCAACTCTATTGG 720
consensus_7324#1 ------------------------------------------------------------
consensus_7324#0 GTCATTAACTAATTCTTCACTTTTGGGCTTACCATCAGTTTTACAAAGTGTAACTAATCG 780
consensus_7324#1 ------------------------------------------------------------
consensus_7324#0 AATAGGTCCCAATACGAGGCTTAATACACGAACACCGATTAATCCATTGTCAACTTCTAA 840
consensus_7324#1 ------------------------------------------------------------
consensus_7324#0 TTCTCCACGAGCACTCGCTGCATTGCAGGCTGCCGCAGCTGCTCATCAAAACTCTATTCA 900
consensus_7324#1 ------------------------------------------------------------
consensus_7324#0 TCATTCACATGATTCTCCTCTATGGTCAACTCCAAATAATTTTGCCGTTGCTTTAGCTGC 960
consensus_7324#1 ------------------------------------------------------------
consensus_7324#0 TGCAGCAGCAACTCATAATTTACCTCTTGCCTCGGCATTGAATTCTTTAAATTCAAGGAC 1020
consensus_7324#1 ------------------------------------------------------------
consensus_7324#0 TCCAATTTCTGATTCGCATTTACTTACTGGACTTACTAACGCTGGTAAATTGAACCCAAC 1080
consensus_7324#1 ------------------------------------------------------------
consensus_7324#0 TCTGCTAGCAATGTTGAATTCTTCAAATCCTGTTGGACCAGTAGGGCTATCATTACTGAG 1140
consensus_7324#1 ------------------------------------------------------------
consensus_7324#0 TAGTATTATTAGAAGTAACGTTTCTGGAAAGCATCCTAATAATCCATGGCATTGAATCTT 1200
consensus_7324#1 ------------------------------------------------------------
consensus_7324#0 GAATAACATTACTCTTTTTTTAGTTATGTATAATTATTTTGATGTTAACTGCTATATTTT 1260
consensus_7324#1 ------------------------------------------------------------
consensus_7324#0 CATTTATATCCCAATCAAATAACAAGAAACAGTGAAAAATATTTCTCTACCATCGAATAC 1320
consensus_7324#1 ------------------------------------------------------------
consensus_7324#0 TACA 1324
consensus_7324#1 ----
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||