cluster # 7324

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Schistosoma mansoni
cluster # 7324 cluster # 7324 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7324#0 length = 1324 sequences # 4

consensus_7324#1 length = 343 sequences # 1

consensusID : consensus_7324#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1324
fasta sequence

                              [GAAACTTAAATGGGGTTTCCGTCGTTGTGAAGATATTTGTTGGATCAAAACAAACATCAATAATCCAAGACATGAAGCTCTTGAACCGAATTGTGTTTTTCAACGCACAAAAGAACATTGCTTAATGGGTATACACGGAACTGTTAGACGTTCCACTGATGGGGATTTCATTCATGCTAATATAGACATTGATCTGATTATTGAAGAGGCTCCTCCACAAGGCAGTTATGCTGCTAAAGATAAACCAACCGAAATATTTCACATTATTGAACATTTTTGTCTTGGAAGACGAAGATTACATTTATTCGGTAGAGATAGTACATTAAGACCTGGTTGGGTGACAGTAGGTAATGAACTTTCCGCATCGAATTATGACCCACGTATATATGCTAACAATTTTAATAAAGATCCTAATGGATTGTTGCTGGGAACAACTGAAGAAATTGAACGATTACGGCCGAAATCTCCACCACCACGTCATACGAACCCGAATACTGCAACAGGTGCTCCCAACACAATTTCTTCACTTTCGGAAGTTATATCTGGTCCTGTTTGTCCTAATCCTGCTTTGCCTACTGGACATATACCTCATTCAATAGCTCCGACATGTTCAGTTAGCAATTCTGTTGTATCGAATATCAGTTCCATTCCTGGCATTTCTGGCCATCCTATACGGAGATTTAATGCTACAAATGTGATTAAACCTCTCAACTCTATTGGGTCATTAACTAATTCTTCACTTTTGGGCTTACCATCAGTTTTACAAAGTGTAACTAATCGAATAGGTCCCAATACGAGGCTTAATACACGAACACCGATTAATCCATTGTCAACTTCTAATTCTCCACGAGCACTCGCTGCATTGCAGGCTGCCGCAGCTGCTCATCAAAACTCTATTCATCATTCACATGATTCTCCTCTATGGTCAACTCCAAATAATTTTGCCGTTGCTTTAGCTGCTGCAGCAGCAACTCATAATTTACCTCTTGCCTCGGCATTGAATTCTTTAAATTCAAGGACTCCAATTTCTGATTCGCATTTACTTACTGGACTTACTAACGCTGGTAAATTGAACCCAACTCTGCTAGCAATGTTGAATTCTTCAAATCCTGTTGGACCAGTAGGGCTATCATTACTGAGTAGTATTATTAGAAGTAACGTTTCTGGAAAGCATCCTAATAATCCATGGCATTGAATCTTGAATAACATTACTCTTTTTTTAGTTATGTATAATTATTTTGATGTTAACTGCTATATTTTCATTTATATCCCAATCAAATAACAAGAAACAGTGAAAAATATTTCTCTACCATCGAATACTACA]

[+] EMBL CD082315             [GAAACTTAAATGGGGTTTCCGTCGTTGTGAAGATATTTGTTGGATCAAAACAAACATCAATAATCCAAGACATGAAGCTCTTGAACCGAATTGTGTTTTTCAACGCACAAAAGAACATTGCTTAATGGGTATACACGGAACTGTTAGACGTTCCACTGATGGGGATTTCATTCATGCTAATATAGACATTGATCTGATTATTGAAGAGGCTCCTCCACAAGGCAGTTATGCTGCTAAAGATAAACCAACCGAAATATTTCACATTATTGAACATTTTTGTCTTGGAAGACGAAGATTACATTTATTCGGTAGAGATAGTACATTAAGACCTGGTTGGGTGACAGTAGGTAATGAACTTTCCGCATCGAATTATGACCCACGTATATATGCTAACAATTTTAATAAAGATCCTAATGGATTGTTGCTGGGAACAACTGAAGAAATTGAACGATTACGGCCGAAATCTCCACCACCACGTCATACGAACCCGAATACTGCAACAGGTGCTCCCAACACAATTTCTTCACTTTCGGAAGTTATATCTGGTCCTGTTTGTCCTAATCCTGCTTTGCCTACTGGACATATACCTCATTCAATAGCTCCGACATGTTCAGTTAGCAATTCTGTTGTATCGAATATCAGTTCCATTCCTGGCATTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL CD184790             [                                                                                                                                                                                                                    CTCCACAAGGCAGTTATGCTGCTAAAGATAAACCAACCGAAATATTTCACATTATTGAACATTTTTGTCTTGGAAGACGAAGATTACATTTATTCGGTAGAGATAGTACATTAAGACCTGGTTGGGTGACAGTAGGTAATGAACTTTCCGCATCGAATTATGACCCACGTATATATGCTAACAATTTTAATAAAGATCCTAATGGATTGTTGCTGGGAACAACTGAAGAAATTGAACGATTACGGCCGAAATCTCCACCCCCACGTCATACGAACCCGAATACTGCAACAGGTGCTCCCAACACAATTTCTTCACTTTCGGAAGTTATATCTGGTCCTGTTTGTCCTAATCCTGCTTTGCCTACTGGACATATACCTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL SMAA85209            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TCTTCACTTTCGGAAGTTATATCTGGTCCTGTTTGTCCTAATCCTGCTTTGCCTACTGGACATATACCTCATTCAATAGCTCCGACATGTTCAGTTAGCAATTCTGTTGTATCGAATATCAGTTCCATTCCTGGCATTTCTGGCCATCCTATACGGAGATTTAATGCTACAAATGTGATTAAACCTCTCAACTCTATTGGGTCATTAACTAATTCTTCACTTTTGGGCTTACCATCAGTTTTACAAAGTGTAACTAATCGAATAGGTCCCAATACGAGGCTTAATACACGAACACCGATTAATCCATTGTCAACTTCTAATTCTCCACGAGCACTCGCTGCATTGCAGGCTGCCGCAGCTGCTCATCAAAACTCTATTCATCATTCACATGATTCTCCTCTATGGTCAACTCCAAATAATTTTGCCGTTGCTTTAGCTGCTGCAGCAGCAACTCATAATTTACCTCTTG                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL CD075917             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TTTGGGCTTACCATCAGTTTTACAAAGTGTAACTAATCGAATAGGTCCCAATACGAGGCTTAATACACGAACACCGATTAATCCATTGTCAACTTCTAATTCTCCACGAGCACTCGCTGCATTGCAGGCTGCCGCAGCTGCTCATCAAAACTCTATTCATCATTCACATGATTCTCCTCTATGGTCAACTCCAAATAATTTTGCCGTTGCTTTAGCTGCTGCAGCAGCAACTCATAATTTACCTCTTGCCTCGGCATTGAATTCTTTAAATTCAAGGACTCCAATTTCTGATTCGCATTTACTTACTGGACTTACTAACGCTGGTAAATTGAACCCAACTCTGCTAGCAATGTTGAATTCTTCAAATCCTGTTGGACCAGTAGGGCTATCATTACTGAGTAGTATTATTAGAAGTAACGTTTCTGGAAAGCATCCTAATAATCCATGGCATTGAATCTTGAATAACATTACTCTTTTTTTAGTTATGTATAATTATTTTGATGTTAACTGCTATATTTTCATTTATATCCCAATCAAATAACAAGAAACAGTGAAAAATATTTCTCTACCATCGAATACTACA]




>consensus_7324#0
GAAACTTAAATGGGGTTTCCGTCGTTGTGAAGATATTTGTTGGATCAAAACAAACATCAA
TAATCCAAGACATGAAGCTCTTGAACCGAATTGTGTTTTTCAACGCACAAAAGAACATTG
CTTAATGGGTATACACGGAACTGTTAGACGTTCCACTGATGGGGATTTCATTCATGCTAA
TATAGACATTGATCTGATTATTGAAGAGGCTCCTCCACAAGGCAGTTATGCTGCTAAAGA
TAAACCAACCGAAATATTTCACATTATTGAACATTTTTGTCTTGGAAGACGAAGATTACA
TTTATTCGGTAGAGATAGTACATTAAGACCTGGTTGGGTGACAGTAGGTAATGAACTTTC
CGCATCGAATTATGACCCACGTATATATGCTAACAATTTTAATAAAGATCCTAATGGATT
GTTGCTGGGAACAACTGAAGAAATTGAACGATTACGGCCGAAATCTCCACCACCACGTCA
TACGAACCCGAATACTGCAACAGGTGCTCCCAACACAATTTCTTCACTTTCGGAAGTTAT
ATCTGGTCCTGTTTGTCCTAATCCTGCTTTGCCTACTGGACATATACCTCATTCAATAGC
TCCGACATGTTCAGTTAGCAATTCTGTTGTATCGAATATCAGTTCCATTCCTGGCATTTC
TGGCCATCCTATACGGAGATTTAATGCTACAAATGTGATTAAACCTCTCAACTCTATTGG
GTCATTAACTAATTCTTCACTTTTGGGCTTACCATCAGTTTTACAAAGTGTAACTAATCG
AATAGGTCCCAATACGAGGCTTAATACACGAACACCGATTAATCCATTGTCAACTTCTAA
TTCTCCACGAGCACTCGCTGCATTGCAGGCTGCCGCAGCTGCTCATCAAAACTCTATTCA
TCATTCACATGATTCTCCTCTATGGTCAACTCCAAATAATTTTGCCGTTGCTTTAGCTGC
TGCAGCAGCAACTCATAATTTACCTCTTGCCTCGGCATTGAATTCTTTAAATTCAAGGAC
TCCAATTTCTGATTCGCATTTACTTACTGGACTTACTAACGCTGGTAAATTGAACCCAAC
TCTGCTAGCAATGTTGAATTCTTCAAATCCTGTTGGACCAGTAGGGCTATCATTACTGAG
TAGTATTATTAGAAGTAACGTTTCTGGAAAGCATCCTAATAATCCATGGCATTGAATCTT
GAATAACATTACTCTTTTTTTAGTTATGTATAATTATTTTGATGTTAACTGCTATATTTT
CATTTATATCCCAATCAAATAACAAGAAACAGTGAAAAATATTTCTCTACCATCGAATAC
TACA

consensusID : consensus_7324#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 343
fasta sequence

                              [GCAGGCCAGAATTCGGTCCGAGGGCACAAAAGAACATTGCTTAATGGGTATACACGGAACTGTTAGACGTTCCACTGATGGGGATTTCATTCATGCTAATATAGACATTGATCTGATTATTGAAGAGGCTCCTCCACAAGGCAGTTATGCTGCTAAAGATAAACCAACCGAAATATTTCACATTATTGAACATTTTTGTCTTGGAAGACGAAGATTACATTTATTCGGTAGAGATAGTACATTAAGACCTGGTTGGGTGACAGTAGGTAATGAACTTTCCGCATCGAATTATGACCCACGTATATATGCTAACAATNNTAATAAAGATCCTAATGGATTNGTG]

[+] EMBL CD077694             [GCAGGCCAGAATTCGGTCCGAGGGCACAAAAGAACATTGCTTAATGGGTATACACGGAACTGTTAGACGTTCCACTGATGGGGATTTCATTCATGCTAATATAGACATTGATCTGATTATTGAAGAGGCTCCTCCACAAGGCAGTTATGCTGCTAAAGATAAACCAACCGAAATATTTCACATTATTGAACATTTTTGTCTTGGAAGACGAAGATTACATTTATTCGGTAGAGATAGTACATTAAGACCTGGTTGGGTGACAGTAGGTAATGAACTTTCCGCATCGAATTATGACCCACGTATATATGCTAACAATNNTAATAAAGATCCTAATGGATTNGTG]




>consensus_7324#1
GCAGGCCAGAATTCGGTCCGAGGGCACAAAAGAACATTGCTTAATGGGTATACACGGAAC
TGTTAGACGTTCCACTGATGGGGATTTCATTCATGCTAATATAGACATTGATCTGATTAT
TGAAGAGGCTCCTCCACAAGGCAGTTATGCTGCTAAAGATAAACCAACCGAAATATTTCA
CATTATTGAACATTTTTGTCTTGGAAGACGAAGATTACATTTATTCGGTAGAGATAGTAC
ATTAAGACCTGGTTGGGTGACAGTAGGTAATGAACTTTCCGCATCGAATTATGACCCACG
TATATATGCTAACAATNNTAATAAAGATCCTAATGGATTNGTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7324#0      GAAACTTAAATGGGGTTTCCGTCGTTGTGAAGATATTTGTTGGATCAAAACAAACATCAA 60
consensus_7324#1      ------------------------------------------------------------
                                                                                  

consensus_7324#0      TAATCCAAGACATGAAGCTCTTGAACCGAATTGTGTTTTTCAACGCACAAAAGAACATTG 120
consensus_7324#1      -------------------GCAGGCCAGAATTCGGTCCG--AGGGCACAAAAGAACATTG 39
                                            *  * *****  **     *  ****************

consensus_7324#0      CTTAATGGGTATACACGGAACTGTTAGACGTTCCACTGATGGGGATTTCATTCATGCTAA 180
consensus_7324#1      CTTAATGGGTATACACGGAACTGTTAGACGTTCCACTGATGGGGATTTCATTCATGCTAA 99
                      ************************************************************

consensus_7324#0      TATAGACATTGATCTGATTATTGAAGAGGCTCCTCCACAAGGCAGTTATGCTGCTAAAGA 240
consensus_7324#1      TATAGACATTGATCTGATTATTGAAGAGGCTCCTCCACAAGGCAGTTATGCTGCTAAAGA 159
                      ************************************************************

consensus_7324#0      TAAACCAACCGAAATATTTCACATTATTGAACATTTTTGTCTTGGAAGACGAAGATTACA 300
consensus_7324#1      TAAACCAACCGAAATATTTCACATTATTGAACATTTTTGTCTTGGAAGACGAAGATTACA 219
                      ************************************************************

consensus_7324#0      TTTATTCGGTAGAGATAGTACATTAAGACCTGGTTGGGTGACAGTAGGTAATGAACTTTC 360
consensus_7324#1      TTTATTCGGTAGAGATAGTACATTAAGACCTGGTTGGGTGACAGTAGGTAATGAACTTTC 279
                      ************************************************************

consensus_7324#0      CGCATCGAATTATGACCCACGTATATATGCTAACAATTTTAATAAAGATCCTAATGGATT 420
consensus_7324#1      CGCATCGAATTATGACCCACGTATATATGCTAACAATNNTAATAAAGATCCTAATGGATT 339
                      *************************************  *********************

consensus_7324#0      GTTGCTGGGAACAACTGAAGAAATTGAACGATTACGGCCGAAATCTCCACCACCACGTCA 480
consensus_7324#1      NGTG-------------------------------------------------------- 343
                        **                                                        

consensus_7324#0      TACGAACCCGAATACTGCAACAGGTGCTCCCAACACAATTTCTTCACTTTCGGAAGTTAT 540
consensus_7324#1      ------------------------------------------------------------
                                                                                  

consensus_7324#0      ATCTGGTCCTGTTTGTCCTAATCCTGCTTTGCCTACTGGACATATACCTCATTCAATAGC 600
consensus_7324#1      ------------------------------------------------------------
                                                                                  

consensus_7324#0      TCCGACATGTTCAGTTAGCAATTCTGTTGTATCGAATATCAGTTCCATTCCTGGCATTTC 660
consensus_7324#1      ------------------------------------------------------------
                                                                                  

consensus_7324#0      TGGCCATCCTATACGGAGATTTAATGCTACAAATGTGATTAAACCTCTCAACTCTATTGG 720
consensus_7324#1      ------------------------------------------------------------
                                                                                  

consensus_7324#0      GTCATTAACTAATTCTTCACTTTTGGGCTTACCATCAGTTTTACAAAGTGTAACTAATCG 780
consensus_7324#1      ------------------------------------------------------------
                                                                                  

consensus_7324#0      AATAGGTCCCAATACGAGGCTTAATACACGAACACCGATTAATCCATTGTCAACTTCTAA 840
consensus_7324#1      ------------------------------------------------------------
                                                                                  

consensus_7324#0      TTCTCCACGAGCACTCGCTGCATTGCAGGCTGCCGCAGCTGCTCATCAAAACTCTATTCA 900
consensus_7324#1      ------------------------------------------------------------
                                                                                  

consensus_7324#0      TCATTCACATGATTCTCCTCTATGGTCAACTCCAAATAATTTTGCCGTTGCTTTAGCTGC 960
consensus_7324#1      ------------------------------------------------------------
                                                                                  

consensus_7324#0      TGCAGCAGCAACTCATAATTTACCTCTTGCCTCGGCATTGAATTCTTTAAATTCAAGGAC 1020
consensus_7324#1      ------------------------------------------------------------
                                                                                  

consensus_7324#0      TCCAATTTCTGATTCGCATTTACTTACTGGACTTACTAACGCTGGTAAATTGAACCCAAC 1080
consensus_7324#1      ------------------------------------------------------------
                                                                                  

consensus_7324#0      TCTGCTAGCAATGTTGAATTCTTCAAATCCTGTTGGACCAGTAGGGCTATCATTACTGAG 1140
consensus_7324#1      ------------------------------------------------------------
                                                                                  

consensus_7324#0      TAGTATTATTAGAAGTAACGTTTCTGGAAAGCATCCTAATAATCCATGGCATTGAATCTT 1200
consensus_7324#1      ------------------------------------------------------------
                                                                                  

consensus_7324#0      GAATAACATTACTCTTTTTTTAGTTATGTATAATTATTTTGATGTTAACTGCTATATTTT 1260
consensus_7324#1      ------------------------------------------------------------
                                                                                  

consensus_7324#0      CATTTATATCCCAATCAAATAACAAGAAACAGTGAAAAATATTTCTCTACCATCGAATAC 1320
consensus_7324#1      ------------------------------------------------------------
                                                                                  

consensus_7324#0      TACA 1324
consensus_7324#1      ----